Wall clock time and date at job start Mon Mar 30 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30853 * 125.42343 * 2 1 4 4 C 1.33316 * 109.68999 * 180.02562 * 3 2 1 5 5 C 1.36664 * 107.78252 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84144 * 179.97438 * 5 4 3 7 7 O 1.21682 * 120.00031 * 184.94001 * 6 5 4 8 8 N 1.34776 * 120.00302 * 4.93932 * 6 5 4 9 9 C 1.46501 * 120.00071 * 174.58635 * 8 6 5 10 10 H 1.08998 * 110.88645 * 328.88017 * 9 8 6 11 11 C 1.55156 * 111.00193 * 204.99890 * 9 8 6 12 12 C 1.54321 * 102.94253 * 206.38868 * 11 9 8 13 13 N 1.47027 * 107.27341 * 22.19195 * 12 11 9 14 14 C 1.36927 * 125.65012 * 181.02889 * 13 12 11 15 15 H 1.07999 * 120.00135 * 185.53941 * 14 13 12 16 16 C 1.38812 * 120.00222 * 5.53110 * 14 13 12 17 17 N 1.31612 * 119.99929 * 6.43741 * 16 14 13 18 18 Si 1.86805 * 120.00011 * 186.42914 * 16 14 13 19 19 H 1.48493 * 109.47167 * 265.01202 * 18 16 14 20 20 H 1.48493 * 109.46904 * 25.01367 * 18 16 14 21 21 H 1.48505 * 109.46855 * 145.01132 * 18 16 14 22 22 C 1.47429 * 108.70008 * 1.28821 * 13 12 11 23 23 N 1.34500 * 125.41549 * 180.31636 * 2 1 3 24 24 C 1.46501 * 126.47226 * 359.97438 * 23 2 1 25 25 H 1.09006 * 109.46838 * 89.97334 * 1 2 3 26 26 H 1.09004 * 109.47086 * 209.97524 * 1 2 3 27 27 H 1.08999 * 109.46726 * 329.97544 * 1 2 3 28 28 H 1.07996 * 126.10656 * 179.97438 * 4 3 2 29 29 H 0.96999 * 119.99833 * 354.59005 * 8 6 5 30 30 H 1.08999 * 110.72047 * 88.02466 * 11 9 8 31 31 H 1.09000 * 110.72102 * 324.74817 * 11 9 8 32 32 H 1.09006 * 109.88246 * 262.77687 * 12 11 9 33 33 H 1.08999 * 110.01456 * 141.68316 * 12 11 9 34 34 H 0.96999 * 120.00477 * 179.97438 * 17 16 14 35 35 H 1.08994 * 110.36253 * 94.47996 * 22 13 12 36 36 H 1.08995 * 110.36811 * 216.80411 * 22 13 12 37 37 H 1.08999 * 109.47467 * 273.30071 * 24 23 2 38 38 H 1.09005 * 109.47413 * 33.30664 * 24 23 2 39 39 H 1.09000 * 109.47059 * 153.30339 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7048 -0.0006 5 6 3.5975 -0.6610 -0.0015 6 6 4.8028 -1.4984 -0.0029 7 8 4.7033 -2.7077 -0.0944 8 7 6.0198 -0.9281 0.0971 9 6 7.2147 -1.7675 0.2152 10 1 6.9865 -2.6971 0.7366 11 6 8.3647 -1.0017 0.9211 12 6 9.6297 -1.6904 0.3671 13 7 9.2579 -2.3292 -0.9039 14 6 10.0937 -3.0622 -1.7032 15 1 9.7493 -3.4165 -2.6635 16 6 11.3839 -3.3498 -1.2794 17 7 11.7630 -3.0291 -0.0605 18 14 12.5819 -4.1924 -2.4389 19 1 12.5560 -5.6575 -2.1985 20 1 12.1895 -3.9142 -3.8438 21 1 13.9526 -3.6750 -2.1960 22 6 7.8376 -2.0444 -1.1783 23 7 2.2864 -1.0961 -0.0061 24 6 1.8310 -2.4885 -0.0132 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.3978 1.3721 -0.0011 29 1 6.1046 0.0382 0.0910 30 1 8.3019 -1.1229 2.0025 31 1 8.3495 0.0536 0.6487 32 1 9.9804 -2.4442 1.0721 33 1 10.4121 -0.9511 0.1954 34 1 12.6644 -3.2304 0.2358 35 1 7.7435 -1.1679 -1.8194 36 1 7.3603 -2.9076 -1.6420 37 1 1.6621 -2.8209 1.0110 38 1 0.9015 -2.5639 -0.5776 39 1 2.5905 -3.1168 -0.4785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015615304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:06 Heat of formation + Delta-G solvation = 51.584934 kcal Electronic energy + Delta-G solvation = -21395.900233 eV Core-core repulsion = 18147.385622 eV Total energy + Delta-G solvation = -3248.514611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.41175 -39.36493 -37.19336 -34.58759 -33.81566 -32.33902 -31.67464 -29.27788 -28.22744 -27.22528 -26.49862 -24.47964 -22.94809 -20.90556 -20.43191 -19.98678 -19.76825 -17.83304 -16.83368 -16.41032 -16.26950 -15.70250 -14.70130 -14.58505 -14.46003 -13.98362 -13.94645 -13.60856 -13.45503 -13.01197 -12.86218 -12.67593 -12.64608 -12.45534 -12.22884 -11.84016 -11.07298 -10.87154 -10.78129 -10.52551 -10.28910 -10.10218 -9.95405 -9.89921 -9.79953 -9.68730 -8.89628 -8.62889 -8.54053 -6.83611 -5.70462 -3.06532 1.20179 2.31943 2.65162 3.34256 3.36037 3.41294 3.46636 3.48912 4.10899 4.46701 4.52210 4.60704 4.80619 4.95821 5.09096 5.15099 5.24184 5.27600 5.35910 5.42618 5.50274 5.58575 5.71840 5.76573 5.97748 6.15217 6.28799 6.34751 6.40647 6.54493 6.68333 6.84375 6.93535 7.43594 7.59025 7.63016 7.75161 7.81007 8.23760 8.28536 9.20663 9.81235 10.46076 11.39418 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042203 B = 0.003346 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.298974 B = 8365.105171 C = 8654.383223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.221 3.779 3 N -0.495 5.495 4 C 0.036 3.964 5 C -0.081 4.081 6 C 0.591 3.409 7 O -0.545 6.545 8 N -0.701 5.701 9 C 0.130 3.870 10 H 0.098 0.902 11 C -0.148 4.148 12 C 0.173 3.827 13 N -0.603 5.603 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.913 3.087 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.129 3.871 23 N -0.424 5.424 24 C 0.063 3.937 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.179 0.821 29 H 0.400 0.600 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.252 0.748 35 H 0.021 0.979 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.776 6.354 2.622 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 N -0.214 5.214 4 C -0.118 4.118 5 C -0.198 4.198 6 C 0.378 3.622 7 O -0.424 6.424 8 N -0.351 5.351 9 C 0.026 3.974 10 H 0.116 0.884 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.329 5.329 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.002 3.998 23 N -0.105 5.105 24 C -0.079 4.079 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.196 0.804 29 H 0.234 0.766 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.951 5.993 2.584 21.944 hybrid contribution 1.093 -0.762 -0.568 1.448 sum -19.858 5.231 2.015 20.634 Atomic orbital electron populations 1.20254 0.84466 1.04308 1.03810 1.23417 0.95893 0.81236 1.03582 1.70083 1.02175 1.28119 1.20984 1.22633 0.95160 0.91294 1.02712 1.20855 0.85400 0.94970 1.18596 1.16772 0.82145 0.86638 0.76694 1.90787 1.86730 1.14185 1.50669 1.45678 1.05378 1.10429 1.73626 1.22427 0.82178 0.94105 0.98718 0.88388 1.23171 0.96718 0.99169 0.99647 1.21230 0.90471 0.95447 0.88057 1.44393 1.04782 1.60453 1.23318 1.19065 0.92767 1.25907 0.97828 0.90417 1.24813 0.97804 1.01109 0.96723 1.69932 1.18419 1.52486 1.16037 0.86088 0.80629 0.79043 0.79948 1.21612 1.20632 1.21630 1.21883 0.86400 0.98134 0.93433 1.45077 1.05191 1.08339 1.51859 1.22330 1.02511 0.78986 1.04085 0.89815 0.90592 0.88799 0.80355 0.76552 0.91431 0.91936 0.91672 0.94784 0.93736 0.96103 0.93802 0.90222 0.89620 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 9.99 36.01 0.36 -0.08 16 2 C 0.22 2.42 7.88 -155.61 -1.23 1.19 16 3 N -0.49 -6.38 11.20 -10.58 -0.12 -6.50 16 4 C 0.04 0.45 11.37 -17.48 -0.20 0.25 16 5 C -0.08 -1.10 6.91 -82.14 -0.57 -1.66 16 6 C 0.59 9.17 7.78 -12.81 -0.10 9.07 16 7 O -0.55 -10.08 14.49 5.20 0.08 -10.00 16 8 N -0.70 -10.15 5.18 -52.89 -0.27 -10.43 16 9 C 0.13 2.35 3.40 -65.66 -0.22 2.12 16 10 H 0.10 1.95 7.62 -51.93 -0.40 1.55 16 11 C -0.15 -2.61 6.59 -24.90 -0.16 -2.78 16 12 C 0.17 4.12 5.44 -3.06 -0.02 4.10 16 13 N -0.60 -15.56 3.39 -169.93 -0.58 -16.13 16 14 C -0.23 -6.43 10.26 -15.06 -0.15 -6.59 16 15 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 16 C -0.01 -0.23 5.46 -17.43 -0.10 -0.33 16 17 N -0.92 -27.02 10.43 55.49 0.58 -26.44 16 18 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 C 0.13 2.77 6.94 -2.41 -0.02 2.76 16 23 N -0.42 -5.00 3.17 -117.27 -0.37 -5.37 16 24 C 0.06 0.57 10.35 59.85 0.62 1.19 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.33 7.76 -51.93 -0.40 -0.08 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.18 1.67 7.46 -52.49 -0.39 1.28 16 29 H 0.40 4.59 7.51 -40.82 -0.31 4.29 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 32 H 0.07 1.73 6.92 -51.93 -0.36 1.37 16 33 H 0.03 0.88 7.94 -51.93 -0.41 0.46 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.50 7.80 -51.93 -0.40 0.10 16 39 H 0.11 1.26 6.24 -51.93 -0.32 0.94 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -34.45 323.35 -8.12 -42.56 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.50 Total: 0.95 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -1.78 Total: 9.24 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.76 Total: -64.87 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.45 -8.12 -42.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015615304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.147 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds