Wall clock time and date at job start Mon Mar 30 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30853 * 125.42343 * 2 1 4 4 C 1.33316 * 109.68999 * 180.02562 * 3 2 1 5 5 C 1.36664 * 107.78252 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84144 * 179.97438 * 5 4 3 7 7 O 1.21682 * 120.00031 * 184.94001 * 6 5 4 8 8 N 1.34776 * 120.00302 * 4.93932 * 6 5 4 9 9 C 1.46501 * 120.00071 * 174.58635 * 8 6 5 10 10 H 1.08998 * 110.88645 * 328.88017 * 9 8 6 11 11 C 1.55156 * 111.00193 * 204.99890 * 9 8 6 12 12 C 1.54321 * 102.94253 * 206.38868 * 11 9 8 13 13 N 1.47027 * 107.27341 * 22.19195 * 12 11 9 14 14 C 1.36927 * 125.65012 * 181.02889 * 13 12 11 15 15 H 1.07999 * 120.00135 * 185.53941 * 14 13 12 16 16 C 1.38812 * 120.00222 * 5.53110 * 14 13 12 17 17 N 1.31612 * 119.99929 * 6.43741 * 16 14 13 18 18 Si 1.86805 * 120.00011 * 186.42914 * 16 14 13 19 19 H 1.48493 * 109.47167 * 265.01202 * 18 16 14 20 20 H 1.48493 * 109.46904 * 25.01367 * 18 16 14 21 21 H 1.48505 * 109.46855 * 145.01132 * 18 16 14 22 22 C 1.47429 * 108.70008 * 1.28821 * 13 12 11 23 23 N 1.34500 * 125.41549 * 180.31636 * 2 1 3 24 24 C 1.46501 * 126.47226 * 359.97438 * 23 2 1 25 25 H 1.09006 * 109.46838 * 89.97334 * 1 2 3 26 26 H 1.09004 * 109.47086 * 209.97524 * 1 2 3 27 27 H 1.08999 * 109.46726 * 329.97544 * 1 2 3 28 28 H 1.07996 * 126.10656 * 179.97438 * 4 3 2 29 29 H 0.96999 * 119.99833 * 354.59005 * 8 6 5 30 30 H 1.08999 * 110.72047 * 88.02466 * 11 9 8 31 31 H 1.09000 * 110.72102 * 324.74817 * 11 9 8 32 32 H 1.09006 * 109.88246 * 262.77687 * 12 11 9 33 33 H 1.08999 * 110.01456 * 141.68316 * 12 11 9 34 34 H 0.96999 * 120.00477 * 179.97438 * 17 16 14 35 35 H 1.08994 * 110.36253 * 94.47996 * 22 13 12 36 36 H 1.08995 * 110.36811 * 216.80411 * 22 13 12 37 37 H 1.08999 * 109.47467 * 273.30071 * 24 23 2 38 38 H 1.09005 * 109.47413 * 33.30664 * 24 23 2 39 39 H 1.09000 * 109.47059 * 153.30339 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7048 -0.0006 5 6 3.5975 -0.6610 -0.0015 6 6 4.8028 -1.4984 -0.0029 7 8 4.7033 -2.7077 -0.0944 8 7 6.0198 -0.9281 0.0971 9 6 7.2147 -1.7675 0.2152 10 1 6.9865 -2.6971 0.7366 11 6 8.3647 -1.0017 0.9211 12 6 9.6297 -1.6904 0.3671 13 7 9.2579 -2.3292 -0.9039 14 6 10.0937 -3.0622 -1.7032 15 1 9.7493 -3.4165 -2.6635 16 6 11.3839 -3.3498 -1.2794 17 7 11.7630 -3.0291 -0.0605 18 14 12.5819 -4.1924 -2.4389 19 1 12.5560 -5.6575 -2.1985 20 1 12.1895 -3.9142 -3.8438 21 1 13.9526 -3.6750 -2.1960 22 6 7.8376 -2.0444 -1.1783 23 7 2.2864 -1.0961 -0.0061 24 6 1.8310 -2.4885 -0.0132 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.3978 1.3721 -0.0011 29 1 6.1046 0.0382 0.0910 30 1 8.3019 -1.1229 2.0025 31 1 8.3495 0.0536 0.6487 32 1 9.9804 -2.4442 1.0721 33 1 10.4121 -0.9511 0.1954 34 1 12.6644 -3.2304 0.2358 35 1 7.7435 -1.1679 -1.8194 36 1 7.3603 -2.9076 -1.6420 37 1 1.6621 -2.8209 1.0110 38 1 0.9015 -2.5639 -0.5776 39 1 2.5905 -3.1168 -0.4785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015615304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:06 Heat of formation + Delta-G solvation = 27.611483 kcal Electronic energy + Delta-G solvation = -21396.939800 eV Core-core repulsion = 18147.385622 eV Total energy + Delta-G solvation = -3249.554178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.29569 -40.68894 -38.83872 -35.86163 -34.98473 -33.88018 -32.76117 -31.05374 -29.43916 -28.31705 -27.61067 -26.34519 -24.06583 -22.23537 -22.03288 -21.41488 -20.76112 -19.16451 -18.55776 -17.58352 -17.16954 -16.91060 -16.65783 -16.04580 -15.70666 -15.56421 -14.87179 -14.66178 -14.27307 -14.19478 -14.09790 -13.94909 -13.77395 -13.67788 -13.29063 -13.14452 -12.95775 -12.76598 -12.43728 -12.11814 -12.04032 -11.83352 -11.62457 -11.45741 -10.95375 -10.75534 -10.74437 -10.23165 -9.49237 -8.91992 -7.85683 -5.24644 0.23287 1.41742 1.45775 1.47092 1.56708 1.73722 2.23217 2.25411 2.50174 3.30689 3.39431 3.58877 3.66426 3.84061 3.90256 3.96208 4.02425 4.19085 4.31124 4.38218 4.56884 4.60012 4.70218 4.72061 4.73782 4.86494 4.96617 5.02562 5.05806 5.17053 5.38859 5.43939 5.50140 5.59362 5.76258 6.06365 6.19294 6.44118 6.86276 7.07400 7.10989 7.73478 8.36922 9.22178 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042203 B = 0.003346 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.298974 B = 8365.105171 C = 8654.383223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.230 3.770 3 N -0.525 5.525 4 C 0.046 3.954 5 C -0.113 4.113 6 C 0.593 3.407 7 O -0.582 6.582 8 N -0.688 5.688 9 C 0.151 3.849 10 H 0.078 0.922 11 C -0.126 4.126 12 C 0.177 3.823 13 N -0.625 5.625 14 C -0.248 4.248 15 H 0.077 0.923 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.979 3.021 19 H -0.287 1.287 20 H -0.270 1.270 21 H -0.290 1.290 22 C 0.128 3.872 23 N -0.431 5.431 24 C 0.061 3.939 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.203 0.797 29 H 0.418 0.582 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.008 0.992 34 H 0.249 0.751 35 H 0.034 0.966 36 H 0.025 0.975 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.850 7.547 2.492 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 N -0.244 5.244 4 C -0.109 4.109 5 C -0.229 4.229 6 C 0.382 3.618 7 O -0.463 6.463 8 N -0.339 5.339 9 C 0.045 3.955 10 H 0.096 0.904 11 C -0.165 4.165 12 C 0.052 3.948 13 N -0.352 5.352 14 C -0.377 4.377 15 H 0.095 0.905 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.214 1.214 20 H -0.195 1.195 21 H -0.216 1.216 22 C 0.001 3.999 23 N -0.112 5.112 24 C -0.080 4.080 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.220 0.780 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.064 7.216 2.448 24.290 hybrid contribution 1.617 -1.116 -0.552 2.041 sum -21.446 6.100 1.897 22.378 Atomic orbital electron populations 1.20508 0.81178 1.05874 1.05318 1.24325 0.97585 0.80486 1.00807 1.70151 1.02547 1.29135 1.22586 1.23087 0.95937 0.91088 1.00739 1.20603 0.85471 0.95141 1.21667 1.17052 0.82831 0.86345 0.75620 1.90775 1.87267 1.15908 1.52357 1.45368 1.04096 1.10954 1.73471 1.21894 0.83417 0.94137 0.96066 0.90396 1.22991 0.92840 1.00053 1.00621 1.21039 0.92855 0.94061 0.86861 1.44676 1.06381 1.60385 1.23717 1.19407 0.93681 1.26231 0.98362 0.90544 1.25652 0.99403 1.02158 0.98329 1.70145 1.18412 1.53453 1.17486 0.85061 0.78067 0.77763 0.78422 1.21365 1.19506 1.21581 1.21986 0.84534 0.97682 0.95673 1.45313 1.04738 1.09426 1.51700 1.22456 1.03009 0.77439 1.05140 0.88159 0.88248 0.88038 0.78035 0.74428 0.89101 0.88750 0.95246 0.97428 0.94176 0.94821 0.95693 0.89133 0.86088 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 9.99 71.24 0.71 0.08 16 2 C 0.23 4.45 7.88 138.20 1.09 5.54 16 3 N -0.52 -12.36 11.20 -187.40 -2.10 -14.46 16 4 C 0.05 1.04 11.37 84.10 0.96 2.00 16 5 C -0.11 -2.88 6.91 40.01 0.28 -2.61 16 6 C 0.59 18.04 7.78 86.47 0.67 18.71 16 7 O -0.58 -21.82 14.49 -4.29 -0.06 -21.89 16 8 N -0.69 -18.93 5.18 -439.47 -2.28 -21.20 16 9 C 0.15 5.35 3.40 46.46 0.16 5.51 16 10 H 0.08 3.13 7.62 -2.39 -0.02 3.11 16 11 C -0.13 -4.28 6.59 31.78 0.21 -4.07 16 12 C 0.18 8.59 5.44 86.73 0.47 9.06 16 13 N -0.62 -32.97 3.39 -691.54 -2.35 -35.32 16 14 C -0.25 -14.35 10.26 84.04 0.86 -13.49 16 15 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 16 C -0.06 -3.58 5.46 84.86 0.46 -3.12 16 17 N -0.95 -57.06 10.43 21.65 0.23 -56.83 16 18 Si 0.98 46.43 29.56 68.60 2.03 48.46 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 C 0.13 5.54 6.94 86.93 0.60 6.15 16 23 N -0.43 -9.39 3.17 -524.93 -1.67 -11.06 16 24 C 0.06 1.00 10.35 127.77 1.32 2.32 16 25 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.10 0.44 7.76 -2.39 -0.02 0.43 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.20 3.21 7.46 -2.91 -0.02 3.19 16 29 H 0.42 8.50 7.51 -92.71 -0.70 7.80 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.09 2.63 8.00 -2.39 -0.02 2.62 16 32 H 0.03 1.62 6.92 -2.38 -0.02 1.61 16 33 H 0.01 0.40 7.94 -2.39 -0.02 0.38 16 34 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.12 1.06 7.80 -2.38 -0.02 1.04 16 39 H 0.08 1.90 6.24 -2.39 -0.01 1.88 16 Total: -1.00 -77.40 323.35 1.97 -75.44 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.37 Total: 10.78 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 7.80 Total: 26.08 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -8.16 Total: -138.87 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -77.40 1.97 -75.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015615304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.047 kcal (2) G-P(sol) polarization free energy of solvation -77.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds