Wall clock time and date at job start Tue Mar 31 2020 00:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47055 * 2 1 4 4 N 1.33317 * 126.10791 * 270.12716 * 3 2 1 5 5 C 1.30859 * 109.68273 * 180.26865 * 4 3 2 6 6 N 1.34493 * 109.16466 * 359.76405 * 5 4 3 7 7 H 0.97004 * 126.47536 * 179.97438 * 6 5 4 8 8 C 1.36667 * 126.10282 * 89.99663 * 3 2 1 9 9 C 1.46765 * 126.84864 * 0.02562 * 8 3 2 10 10 O 1.21690 * 119.99650 * 359.70942 * 9 8 3 11 11 N 1.34773 * 120.00305 * 179.71028 * 9 8 3 12 12 C 1.46502 * 120.00024 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88380 * 328.87404 * 12 11 9 14 14 C 1.55160 * 111.00224 * 204.99642 * 12 11 9 15 15 C 1.54316 * 102.94268 * 206.42392 * 14 12 11 16 16 N 1.47026 * 107.27365 * 22.19228 * 15 14 12 17 17 C 1.36933 * 125.65326 * 180.79632 * 16 15 14 18 18 H 1.08001 * 120.00302 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.99866 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47402 * 90.00064 * 21 19 17 23 23 H 1.48498 * 109.46929 * 209.99599 * 21 19 17 24 24 H 1.48496 * 109.47115 * 329.99904 * 21 19 17 25 25 C 1.47425 * 108.70074 * 1.05989 * 16 15 14 26 26 H 1.08990 * 109.47247 * 299.99635 * 1 2 3 27 27 H 1.08997 * 109.46978 * 60.00287 * 1 2 3 28 28 H 1.08997 * 109.46721 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47235 * 240.00381 * 2 1 3 30 30 H 1.09000 * 109.47253 * 120.00132 * 2 1 3 31 31 H 1.07997 * 125.41645 * 179.73838 * 5 4 3 32 32 H 0.97005 * 119.99756 * 359.97438 * 11 9 8 33 33 H 1.08997 * 110.71793 * 88.05722 * 14 12 11 34 34 H 1.09002 * 110.71871 * 324.79069 * 14 12 11 35 35 H 1.09004 * 109.88447 * 262.78098 * 15 14 12 36 36 H 1.09000 * 109.88516 * 141.60887 * 15 14 12 37 37 H 0.97000 * 119.99477 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.36478 * 94.71036 * 25 16 15 39 39 H 1.08998 * 110.36859 * 217.03414 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2920 2.1624 -1.0771 5 6 2.7166 3.3436 -0.7071 6 7 2.7396 3.4036 0.6363 7 1 3.0131 4.1626 1.1750 8 6 2.3007 2.1801 1.1042 9 6 2.1577 1.7743 2.5074 10 8 1.7578 0.6578 2.7800 11 7 2.4692 2.6381 3.4939 12 6 2.3270 2.2328 4.8945 13 1 1.5121 1.5183 5.0114 14 6 2.1208 3.4667 5.8123 15 6 2.6659 2.9811 7.1719 16 7 3.5854 1.8664 6.9006 17 6 4.2680 1.1470 7.8448 18 1 4.9230 0.3433 7.5422 19 6 4.1182 1.4506 9.1911 20 7 3.3195 2.4297 9.5599 21 14 5.0498 0.4697 10.4791 22 1 6.3639 1.1121 10.7357 23 1 4.2629 0.4326 11.7378 24 1 5.2635 -0.9152 9.9877 25 6 3.6557 1.6556 5.4432 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.0033 4.1429 -1.3743 32 1 2.7883 3.5280 3.2764 33 1 1.0629 3.7181 5.8884 34 1 2.6954 4.3184 5.4483 35 1 1.8435 2.6386 7.8001 36 1 3.2012 3.7910 7.6673 37 1 3.2151 2.6421 10.5006 38 1 4.5054 2.1936 5.0227 39 1 3.7294 0.5920 5.2168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016134054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:56 Heat of formation + Delta-G solvation = 41.058462 kcal Electronic energy + Delta-G solvation = -21510.450923 eV Core-core repulsion = 18261.479850 eV Total energy + Delta-G solvation = -3248.971073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.40018 -39.38338 -37.25073 -34.69526 -33.79402 -32.34718 -31.71567 -29.49155 -28.98624 -27.14567 -24.77122 -23.91827 -22.86058 -21.51600 -20.51060 -20.06120 -19.60502 -18.78275 -16.99690 -16.32103 -15.84859 -15.66359 -15.00792 -14.64702 -14.39224 -14.13073 -13.96675 -13.89278 -13.46644 -12.93842 -12.50034 -12.39051 -12.28538 -11.86348 -11.48843 -11.09165 -11.01342 -10.95581 -10.79628 -10.53318 -10.39994 -10.21305 -10.12647 -9.97882 -9.80448 -9.70129 -8.96003 -8.65106 -8.58756 -6.88547 -5.74980 -3.08766 1.17855 2.67458 2.69611 3.17692 3.31259 3.39451 3.44821 3.46919 4.23768 4.48513 4.67170 4.84881 5.00550 5.20885 5.38189 5.44106 5.47936 5.52583 5.56565 5.63487 5.65818 5.72557 6.00972 6.08106 6.19609 6.22888 6.25984 6.33323 6.43667 6.50204 6.63209 6.86326 6.98337 7.45943 7.52048 7.52317 7.74939 7.77635 8.18869 8.23690 9.18106 9.77883 10.42206 11.36973 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032336 B = 0.003599 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.696488 B = 7778.328601 C = 8096.185665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.098 3.902 4 N -0.499 5.499 5 C 0.214 3.786 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.086 4.086 9 C 0.591 3.409 10 O -0.518 6.518 11 N -0.715 5.715 12 C 0.128 3.872 13 H 0.101 0.899 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.603 5.603 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.129 3.871 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.214 0.786 32 H 0.390 0.610 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.253 0.747 38 H 0.018 0.982 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 5.047 -18.759 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.036 4.036 4 N -0.218 5.218 5 C -0.070 4.070 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.201 4.201 9 C 0.376 3.624 10 O -0.393 6.393 11 N -0.365 5.365 12 C 0.023 3.977 13 H 0.119 0.881 14 C -0.188 4.188 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.002 3.998 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.231 0.769 32 H 0.223 0.777 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.479 3.927 -19.077 19.786 hybrid contribution 1.030 1.003 1.617 2.163 sum -2.449 4.929 -17.461 18.308 Atomic orbital electron populations 1.21607 0.94413 1.01789 1.01679 1.20072 0.96223 0.88731 1.03771 1.21052 0.98981 0.97015 0.86579 1.70121 1.18472 1.02694 1.30551 1.25109 1.01773 0.98040 0.82070 1.43350 1.50344 1.13568 1.08817 0.73915 1.21095 1.15473 0.88191 0.95378 1.16843 0.77970 0.85105 0.82442 1.90843 1.46201 1.19579 1.82670 1.45922 1.67531 1.16218 1.06842 1.22376 1.00154 0.97842 0.77293 0.88112 1.23194 1.00869 0.96129 0.98658 1.21153 0.93343 0.90527 0.89564 1.44385 1.51859 1.37458 0.99321 1.19082 1.19590 1.11078 0.85909 0.90325 1.24806 0.99845 0.98790 0.96940 1.69946 1.40476 1.31369 1.15330 0.86085 0.78939 0.79408 0.81152 1.21610 1.21612 1.20593 1.21815 0.93406 0.98348 0.86239 0.92530 0.93055 0.92178 0.90738 0.88607 0.76942 0.77723 0.91513 0.92214 0.93143 0.93519 0.93707 0.96461 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 37.16 0.37 -1.22 16 2 C -0.05 -0.63 5.93 -27.88 -0.17 -0.79 16 3 C 0.10 1.29 6.40 -82.51 -0.53 0.77 16 4 N -0.50 -6.06 11.20 -10.64 -0.12 -6.18 16 5 C 0.21 1.77 13.01 -90.57 -1.18 0.60 16 6 N -0.56 -4.60 6.07 -10.79 -0.07 -4.67 16 7 H 0.42 2.05 8.32 -40.82 -0.34 1.71 16 8 C -0.09 -1.07 7.08 -82.14 -0.58 -1.65 16 9 C 0.59 8.79 7.79 -12.82 -0.10 8.69 16 10 O -0.52 -9.42 14.46 5.20 0.08 -9.34 16 11 N -0.72 -9.74 5.19 -53.00 -0.28 -10.02 16 12 C 0.13 2.24 3.42 -65.78 -0.23 2.01 16 13 H 0.10 1.96 7.54 -51.93 -0.39 1.56 16 14 C -0.15 -2.58 6.60 -24.90 -0.16 -2.74 16 15 C 0.18 4.21 5.37 -3.07 -0.02 4.19 16 16 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 17 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.22 5.49 -17.42 -0.10 -0.31 16 20 N -0.92 -26.84 10.31 55.49 0.57 -26.26 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.13 2.73 6.93 -2.53 -0.02 2.71 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.35 6.48 -51.93 -0.34 1.01 16 31 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.39 3.99 7.81 -40.82 -0.32 3.67 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 35 H 0.05 1.32 7.40 -51.93 -0.38 0.93 16 36 H 0.05 1.20 7.49 -51.93 -0.39 0.81 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -34.10 323.92 -8.89 -42.99 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.50 Total: 1.76 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.86 Total: 5.70 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.47 Total: -63.09 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.10 -8.89 -42.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016134054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.052 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds