Wall clock time and date at job start Tue Mar 31 2020 00:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47055 * 2 1 4 4 N 1.33317 * 126.10791 * 270.12716 * 3 2 1 5 5 C 1.30859 * 109.68273 * 180.26865 * 4 3 2 6 6 N 1.34493 * 109.16466 * 359.76405 * 5 4 3 7 7 H 0.97004 * 126.47536 * 179.97438 * 6 5 4 8 8 C 1.36667 * 126.10282 * 89.99663 * 3 2 1 9 9 C 1.46765 * 126.84864 * 0.02562 * 8 3 2 10 10 O 1.21690 * 119.99650 * 359.70942 * 9 8 3 11 11 N 1.34773 * 120.00305 * 179.71028 * 9 8 3 12 12 C 1.46502 * 120.00024 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88380 * 328.87404 * 12 11 9 14 14 C 1.55160 * 111.00224 * 204.99642 * 12 11 9 15 15 C 1.54316 * 102.94268 * 206.42392 * 14 12 11 16 16 N 1.47026 * 107.27365 * 22.19228 * 15 14 12 17 17 C 1.36933 * 125.65326 * 180.79632 * 16 15 14 18 18 H 1.08001 * 120.00302 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.99866 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47402 * 90.00064 * 21 19 17 23 23 H 1.48498 * 109.46929 * 209.99599 * 21 19 17 24 24 H 1.48496 * 109.47115 * 329.99904 * 21 19 17 25 25 C 1.47425 * 108.70074 * 1.05989 * 16 15 14 26 26 H 1.08990 * 109.47247 * 299.99635 * 1 2 3 27 27 H 1.08997 * 109.46978 * 60.00287 * 1 2 3 28 28 H 1.08997 * 109.46721 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47235 * 240.00381 * 2 1 3 30 30 H 1.09000 * 109.47253 * 120.00132 * 2 1 3 31 31 H 1.07997 * 125.41645 * 179.73838 * 5 4 3 32 32 H 0.97005 * 119.99756 * 359.97438 * 11 9 8 33 33 H 1.08997 * 110.71793 * 88.05722 * 14 12 11 34 34 H 1.09002 * 110.71871 * 324.79069 * 14 12 11 35 35 H 1.09004 * 109.88447 * 262.78098 * 15 14 12 36 36 H 1.09000 * 109.88516 * 141.60887 * 15 14 12 37 37 H 0.97000 * 119.99477 * 180.02562 * 20 19 17 38 38 H 1.09001 * 110.36478 * 94.71036 * 25 16 15 39 39 H 1.08998 * 110.36859 * 217.03414 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2920 2.1624 -1.0771 5 6 2.7166 3.3436 -0.7071 6 7 2.7396 3.4036 0.6363 7 1 3.0131 4.1626 1.1750 8 6 2.3007 2.1801 1.1042 9 6 2.1577 1.7743 2.5074 10 8 1.7578 0.6578 2.7800 11 7 2.4692 2.6381 3.4939 12 6 2.3270 2.2328 4.8945 13 1 1.5121 1.5183 5.0114 14 6 2.1208 3.4667 5.8123 15 6 2.6659 2.9811 7.1719 16 7 3.5854 1.8664 6.9006 17 6 4.2680 1.1470 7.8448 18 1 4.9230 0.3433 7.5422 19 6 4.1182 1.4506 9.1911 20 7 3.3195 2.4297 9.5599 21 14 5.0498 0.4697 10.4791 22 1 6.3639 1.1121 10.7357 23 1 4.2629 0.4326 11.7378 24 1 5.2635 -0.9152 9.9877 25 6 3.6557 1.6556 5.4432 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.0033 4.1429 -1.3743 32 1 2.7883 3.5280 3.2764 33 1 1.0629 3.7181 5.8884 34 1 2.6954 4.3184 5.4483 35 1 1.8435 2.6386 7.8001 36 1 3.2012 3.7910 7.6673 37 1 3.2151 2.6421 10.5006 38 1 4.5054 2.1936 5.0227 39 1 3.7294 0.5920 5.2168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016134054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:54 Heat of formation + Delta-G solvation = 17.121724 kcal Electronic energy + Delta-G solvation = -21511.488898 eV Core-core repulsion = 18261.479850 eV Total energy + Delta-G solvation = -3250.009048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.22281 -40.66536 -38.85570 -35.93213 -35.02894 -33.85341 -32.91111 -31.10798 -30.16177 -28.75104 -26.57635 -25.05522 -23.76462 -22.60473 -22.12630 -21.62619 -20.63779 -19.73350 -18.91372 -17.53173 -17.06308 -16.67924 -16.60494 -16.09566 -15.72030 -15.38799 -15.33176 -14.82543 -14.57127 -14.34530 -14.19001 -13.97816 -13.72420 -13.29614 -12.98024 -12.78748 -12.46375 -12.39655 -12.19271 -12.05574 -11.95361 -11.82982 -11.63240 -11.46188 -11.01342 -10.87781 -10.73761 -10.25864 -9.52309 -8.94327 -7.88605 -5.24732 0.26217 1.45127 1.46958 1.55899 1.84448 1.88032 2.11494 2.24341 2.48996 3.30342 3.51676 3.63818 3.67729 3.87319 4.00923 4.10565 4.17758 4.23273 4.50166 4.53666 4.57638 4.66163 4.69825 4.77411 4.84902 4.92973 5.01688 5.09291 5.25791 5.30953 5.40145 5.45048 5.53849 5.61301 5.71560 6.16379 6.34887 6.46278 6.94359 7.06916 7.10113 7.72429 8.35268 9.21386 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032336 B = 0.003599 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.696488 B = 7778.328601 C = 8096.185665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C 0.086 3.914 4 N -0.534 5.534 5 C 0.243 3.757 6 N -0.540 5.540 7 H 0.440 0.560 8 C -0.105 4.105 9 C 0.591 3.409 10 O -0.558 6.558 11 N -0.699 5.699 12 C 0.148 3.852 13 H 0.080 0.920 14 C -0.127 4.127 15 C 0.183 3.817 16 N -0.625 5.625 17 C -0.249 4.249 18 H 0.077 0.923 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.273 1.273 25 C 0.128 3.872 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.266 0.734 32 H 0.411 0.589 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.014 0.986 36 H 0.018 0.982 37 H 0.249 0.751 38 H 0.031 0.969 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 6.712 -20.785 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.049 4.049 4 N -0.254 5.254 5 C -0.042 4.042 6 N -0.146 5.146 7 H 0.283 0.717 8 C -0.222 4.222 9 C 0.379 3.621 10 O -0.436 6.436 11 N -0.350 5.350 12 C 0.042 3.958 13 H 0.098 0.902 14 C -0.166 4.166 15 C 0.058 3.942 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.198 1.198 25 C 0.001 3.999 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.281 0.719 32 H 0.247 0.753 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.032 0.968 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.917 5.646 -21.132 22.067 hybrid contribution 0.895 0.502 2.135 2.368 sum -2.022 6.148 -18.998 20.070 Atomic orbital electron populations 1.21535 0.93787 1.02374 1.01004 1.20041 0.96799 0.89143 1.03064 1.21179 0.99032 0.97284 0.87396 1.70133 1.20401 1.04319 1.30513 1.26125 0.98054 0.97691 0.82287 1.43250 1.49496 1.12746 1.09126 0.71726 1.20597 1.17764 0.90140 0.93665 1.17139 0.76991 0.84493 0.83460 1.90829 1.47948 1.21394 1.83461 1.45575 1.67447 1.17127 1.04892 1.21835 0.97226 0.97373 0.79359 0.90218 1.23002 1.02459 0.96561 0.94554 1.20951 0.91567 0.89067 0.92584 1.44663 1.51885 1.37838 1.00862 1.19425 1.19905 1.11433 0.87036 0.90484 1.25626 1.00969 0.99983 0.98798 1.70154 1.41622 1.32597 1.15255 0.85076 0.77642 0.78331 0.78260 1.20956 1.21764 1.19760 1.21928 0.95860 0.97725 0.84346 0.94302 0.92380 0.91050 0.89906 0.90725 0.71894 0.75255 0.89209 0.88883 0.96818 0.96341 0.94188 0.95117 0.95569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.90 71.98 0.71 -2.26 16 2 C -0.05 -1.32 5.93 29.85 0.18 -1.14 16 3 C 0.09 2.17 6.40 41.97 0.27 2.44 16 4 N -0.53 -11.59 11.20 -187.59 -2.10 -13.69 16 5 C 0.24 2.99 13.01 180.33 2.35 5.33 16 6 N -0.54 -6.96 6.07 -188.04 -1.14 -8.10 16 7 H 0.44 2.29 8.32 -92.71 -0.77 1.51 16 8 C -0.11 -2.45 7.08 40.01 0.28 -2.17 16 9 C 0.59 17.12 7.79 86.47 0.67 17.79 16 10 O -0.56 -20.75 14.46 -4.32 -0.06 -20.81 16 11 N -0.70 -17.68 5.19 -439.82 -2.28 -19.97 16 12 C 0.15 5.06 3.42 46.38 0.16 5.22 16 13 H 0.08 3.12 7.54 -2.39 -0.02 3.10 16 14 C -0.13 -4.15 6.60 31.78 0.21 -3.94 16 15 C 0.18 8.77 5.37 86.73 0.47 9.23 16 16 N -0.63 -32.53 3.39 -691.98 -2.35 -34.88 16 17 C -0.25 -14.29 10.28 84.04 0.86 -13.42 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 20 N -0.95 -56.53 10.31 21.65 0.22 -56.30 16 21 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.13 5.42 6.93 86.86 0.60 6.02 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 2.19 6.48 -2.39 -0.02 2.18 16 31 H 0.27 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.41 6.96 7.81 -92.70 -0.72 6.24 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.46 8.00 -2.39 -0.02 2.44 16 35 H 0.01 0.74 7.40 -2.38 -0.02 0.72 16 36 H 0.02 0.97 7.49 -2.39 -0.02 0.95 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.89 323.92 1.12 -76.77 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -0.42 Total: 8.76 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.23 Total: 20.10 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -7.65 Total: -132.95 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.89 1.12 -76.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016134054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.891 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds