Wall clock time and date at job start Tue Mar 31 2020 00:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47313 * 2 1 4 4 N 1.33315 * 126.10996 * 270.12174 * 3 2 1 5 5 C 1.30863 * 109.68670 * 180.27318 * 4 3 2 6 6 N 1.34488 * 109.16218 * 359.76493 * 5 4 3 7 7 H 0.97002 * 126.47617 * 180.02562 * 6 5 4 8 8 C 1.36669 * 126.10615 * 89.99975 * 3 2 1 9 9 C 1.46766 * 126.84404 * 359.97438 * 8 3 2 10 10 O 1.21682 * 120.00006 * 359.71183 * 9 8 3 11 11 N 1.34778 * 120.00106 * 179.70964 * 9 8 3 12 12 C 1.46494 * 119.99843 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.78341 * 36.79310 * 12 11 9 14 14 C 1.55156 * 110.71634 * 160.02653 * 12 11 9 15 15 C 1.55129 * 101.49027 * 82.69749 * 14 12 11 16 16 N 1.47427 * 104.71984 * 37.29120 * 15 14 12 17 17 C 1.36934 * 125.64898 * 155.81558 * 16 15 14 18 18 H 1.08001 * 120.00514 * 190.51119 * 17 16 15 19 19 C 1.38811 * 119.99892 * 10.52013 * 17 16 15 20 20 N 1.31624 * 120.00055 * 8.76612 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 189.04194 * 19 17 16 22 22 H 1.48496 * 109.47653 * 264.73802 * 21 19 17 23 23 H 1.48502 * 109.47192 * 24.74041 * 21 19 17 24 24 H 1.48505 * 109.47416 * 144.73474 * 21 19 17 25 25 C 1.47019 * 108.70254 * 335.55884 * 16 15 14 26 26 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47291 * 300.00186 * 1 2 3 28 28 H 1.09000 * 109.46793 * 60.00017 * 1 2 3 29 29 H 1.08998 * 109.47291 * 239.99814 * 2 1 3 30 30 H 1.09000 * 109.47278 * 119.99772 * 2 1 3 31 31 H 1.07999 * 125.41770 * 179.74934 * 5 4 3 32 32 H 0.96995 * 119.99624 * 0.02562 * 11 9 8 33 33 H 1.09007 * 111.00714 * 200.93372 * 14 12 11 34 34 H 1.09001 * 111.00864 * 324.74813 * 14 12 11 35 35 H 1.09002 * 110.49664 * 278.45531 * 15 14 12 36 36 H 1.08999 * 110.34768 * 156.05435 * 15 14 12 37 37 H 0.96993 * 119.99995 * 180.27562 * 20 19 17 38 38 H 1.09003 * 109.88459 * 120.70301 * 25 16 15 39 39 H 1.09003 * 109.88452 * 241.86439 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2921 2.1623 -1.0770 5 6 2.7168 3.3435 -0.7071 6 7 2.7398 3.4035 0.6363 7 1 3.0127 4.1626 1.1750 8 6 2.3008 2.1801 1.1042 9 6 2.1569 1.7746 2.5073 10 8 1.7561 0.6585 2.7800 11 7 2.4686 2.6383 3.4939 12 6 2.3244 2.2337 4.8944 13 1 2.5962 1.1862 5.0243 14 6 3.1786 3.1411 5.8186 15 6 2.2427 4.3647 6.0011 16 7 0.8867 3.7912 6.0766 17 6 -0.1947 4.3759 6.6798 18 1 -1.1007 3.8081 6.8321 19 6 -0.1265 5.6986 7.0954 20 7 0.9064 6.4417 6.7590 21 14 -1.4970 6.4216 8.1386 22 1 -2.4687 7.1236 7.2621 23 1 -2.1893 5.3311 8.8713 24 1 -0.9226 7.3849 9.1120 25 6 0.8862 2.4903 5.3916 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0035 4.1428 -1.3744 32 1 2.7878 3.5281 3.2764 33 1 3.3771 2.6513 6.7720 34 1 4.1087 3.4315 5.3299 35 1 2.3230 5.0374 5.1471 36 1 2.4836 4.8918 6.9242 37 1 0.9560 7.3648 7.0528 38 1 0.5887 1.7053 6.0869 39 1 0.2005 2.5175 4.5447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016134059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:59 Heat of formation + Delta-G solvation = 39.290685 kcal Electronic energy + Delta-G solvation = -21834.352861 eV Core-core repulsion = 18585.305131 eV Total energy + Delta-G solvation = -3249.047730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.28704 -39.38707 -37.24036 -34.53691 -33.64589 -32.27794 -31.60911 -29.45687 -28.90043 -27.30224 -24.72060 -23.96426 -22.80990 -21.50685 -20.36526 -19.87569 -19.58070 -18.72835 -16.93929 -16.21736 -15.85021 -15.57612 -14.90047 -14.70509 -14.30993 -14.07655 -13.89138 -13.78383 -13.37873 -13.22424 -12.58607 -12.30861 -12.08020 -11.73032 -11.40731 -11.14099 -10.96784 -10.88425 -10.84785 -10.51422 -10.40224 -10.13752 -10.09808 -10.09187 -9.77054 -9.68456 -8.90275 -8.65679 -8.49048 -6.87602 -5.82823 -3.14783 1.29086 2.79077 2.81888 3.28924 3.35322 3.41512 3.42366 3.43702 4.34251 4.44503 4.78731 4.94742 5.07999 5.23430 5.36495 5.39558 5.53274 5.56733 5.64533 5.66103 5.72147 5.75142 6.06229 6.12788 6.22666 6.27806 6.35164 6.35867 6.43142 6.54360 6.67515 6.94254 7.10054 7.33706 7.42902 7.60210 7.69462 7.86024 8.17910 8.30738 9.12515 9.73945 10.40713 11.30777 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.004205 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.913235 B = 6657.438213 C = 6703.874039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.095 3.905 4 N -0.500 5.500 5 C 0.214 3.786 6 N -0.554 5.554 7 H 0.424 0.576 8 C -0.084 4.084 9 C 0.593 3.407 10 O -0.525 6.525 11 N -0.709 5.709 12 C 0.134 3.866 13 H 0.092 0.908 14 C -0.155 4.155 15 C 0.173 3.827 16 N -0.602 5.602 17 C -0.227 4.227 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.280 1.280 24 H -0.290 1.290 25 C 0.126 3.874 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.214 0.786 32 H 0.394 0.606 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.252 0.748 38 H 0.034 0.966 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 -6.088 -11.805 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.039 4.039 4 N -0.219 5.219 5 C -0.070 4.070 6 N -0.158 5.158 7 H 0.263 0.737 8 C -0.200 4.200 9 C 0.379 3.621 10 O -0.401 6.401 11 N -0.359 5.359 12 C 0.029 3.971 13 H 0.110 0.890 14 C -0.194 4.194 15 C 0.048 3.952 16 N -0.329 5.329 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.205 1.205 24 H -0.216 1.216 25 C 0.000 4.000 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.231 0.769 32 H 0.227 0.773 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.494 -6.985 -12.268 15.539 hybrid contribution -0.300 1.961 1.370 2.411 sum 6.194 -5.024 -10.897 13.504 Atomic orbital electron populations 1.21617 0.94405 1.01675 1.01915 1.20035 0.96248 0.88749 1.03481 1.21026 0.99197 0.97069 0.86610 1.70107 1.18536 1.02767 1.30536 1.25100 1.01786 0.97986 0.82115 1.43374 1.50033 1.13582 1.08846 0.73716 1.21072 1.15436 0.88169 0.95364 1.16807 0.77814 0.85011 0.82477 1.90801 1.46412 1.20110 1.82825 1.45891 1.67109 1.16401 1.06481 1.22002 0.97231 0.99017 0.78811 0.89038 1.23386 0.97991 0.99348 0.98707 1.21450 0.82426 0.90379 1.00957 1.44494 1.06828 1.17617 1.63931 1.19052 0.92359 0.93682 1.30440 0.90608 1.24804 0.98286 0.95791 1.01461 1.69929 1.30466 1.07466 1.49063 0.86113 0.81026 0.78797 0.79928 1.21651 1.20507 1.21587 1.21703 0.93451 0.89794 0.95089 0.92277 0.92370 0.93026 0.90881 0.88785 0.76947 0.77289 0.90338 0.91694 0.95904 0.91020 0.93752 0.94838 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.05 -0.62 5.93 -27.89 -0.17 -0.78 16 3 C 0.10 1.36 6.40 -82.52 -0.53 0.84 16 4 N -0.50 -6.69 11.20 -10.65 -0.12 -6.81 16 5 C 0.21 2.13 13.01 -90.58 -1.18 0.95 16 6 N -0.55 -5.73 6.07 -10.79 -0.07 -5.80 16 7 H 0.42 3.22 8.32 -40.82 -0.34 2.88 16 8 C -0.08 -1.18 7.08 -82.14 -0.58 -1.76 16 9 C 0.59 9.47 7.79 -12.81 -0.10 9.37 16 10 O -0.53 -9.62 14.55 5.20 0.08 -9.54 16 11 N -0.71 -10.82 5.11 -53.31 -0.27 -11.09 16 12 C 0.13 2.30 3.24 -66.10 -0.21 2.08 16 13 H 0.09 1.52 7.70 -51.93 -0.40 1.12 16 14 C -0.16 -2.62 6.65 -24.46 -0.16 -2.78 16 15 C 0.17 3.86 5.40 -2.41 -0.01 3.85 16 16 N -0.60 -14.94 3.39 -169.93 -0.58 -15.52 16 17 C -0.23 -6.26 10.24 -15.06 -0.15 -6.42 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.20 5.41 -17.43 -0.09 -0.29 16 20 N -0.92 -26.12 10.67 55.49 0.59 -25.53 16 21 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.13 2.68 6.98 -3.07 -0.02 2.66 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.33 6.49 -51.93 -0.34 0.99 16 31 H 0.21 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.39 5.29 7.86 -40.82 -0.32 4.97 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.02 0.54 8.07 -51.93 -0.42 0.12 16 36 H 0.07 1.81 6.94 -51.93 -0.36 1.45 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -33.07 324.52 -8.87 -41.94 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.52 Total: 4.37 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.84 Total: 6.33 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.44 Total: -64.74 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.07 -8.87 -41.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016134059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.230 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds