Wall clock time and date at job start Tue Mar 31 2020 00:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47313 * 2 1 4 4 N 1.33315 * 126.10996 * 270.12174 * 3 2 1 5 5 C 1.30863 * 109.68670 * 180.27318 * 4 3 2 6 6 N 1.34488 * 109.16218 * 359.76493 * 5 4 3 7 7 H 0.97002 * 126.47617 * 180.02562 * 6 5 4 8 8 C 1.36669 * 126.10615 * 89.99975 * 3 2 1 9 9 C 1.46766 * 126.84404 * 359.97438 * 8 3 2 10 10 O 1.21682 * 120.00006 * 359.71183 * 9 8 3 11 11 N 1.34778 * 120.00106 * 179.70964 * 9 8 3 12 12 C 1.46494 * 119.99843 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.78341 * 36.79310 * 12 11 9 14 14 C 1.55156 * 110.71634 * 160.02653 * 12 11 9 15 15 C 1.55129 * 101.49027 * 82.69749 * 14 12 11 16 16 N 1.47427 * 104.71984 * 37.29120 * 15 14 12 17 17 C 1.36934 * 125.64898 * 155.81558 * 16 15 14 18 18 H 1.08001 * 120.00514 * 190.51119 * 17 16 15 19 19 C 1.38811 * 119.99892 * 10.52013 * 17 16 15 20 20 N 1.31624 * 120.00055 * 8.76612 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 189.04194 * 19 17 16 22 22 H 1.48496 * 109.47653 * 264.73802 * 21 19 17 23 23 H 1.48502 * 109.47192 * 24.74041 * 21 19 17 24 24 H 1.48505 * 109.47416 * 144.73474 * 21 19 17 25 25 C 1.47019 * 108.70254 * 335.55884 * 16 15 14 26 26 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47291 * 300.00186 * 1 2 3 28 28 H 1.09000 * 109.46793 * 60.00017 * 1 2 3 29 29 H 1.08998 * 109.47291 * 239.99814 * 2 1 3 30 30 H 1.09000 * 109.47278 * 119.99772 * 2 1 3 31 31 H 1.07999 * 125.41770 * 179.74934 * 5 4 3 32 32 H 0.96995 * 119.99624 * 0.02562 * 11 9 8 33 33 H 1.09007 * 111.00714 * 200.93372 * 14 12 11 34 34 H 1.09001 * 111.00864 * 324.74813 * 14 12 11 35 35 H 1.09002 * 110.49664 * 278.45531 * 15 14 12 36 36 H 1.08999 * 110.34768 * 156.05435 * 15 14 12 37 37 H 0.96993 * 119.99995 * 180.27562 * 20 19 17 38 38 H 1.09003 * 109.88459 * 120.70301 * 25 16 15 39 39 H 1.09003 * 109.88452 * 241.86439 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2921 2.1623 -1.0770 5 6 2.7168 3.3435 -0.7071 6 7 2.7398 3.4035 0.6363 7 1 3.0127 4.1626 1.1750 8 6 2.3008 2.1801 1.1042 9 6 2.1569 1.7746 2.5073 10 8 1.7561 0.6585 2.7800 11 7 2.4686 2.6383 3.4939 12 6 2.3244 2.2337 4.8944 13 1 2.5962 1.1862 5.0243 14 6 3.1786 3.1411 5.8186 15 6 2.2427 4.3647 6.0011 16 7 0.8867 3.7912 6.0766 17 6 -0.1947 4.3759 6.6798 18 1 -1.1007 3.8081 6.8321 19 6 -0.1265 5.6986 7.0954 20 7 0.9064 6.4417 6.7590 21 14 -1.4970 6.4216 8.1386 22 1 -2.4687 7.1236 7.2621 23 1 -2.1893 5.3311 8.8713 24 1 -0.9226 7.3849 9.1120 25 6 0.8862 2.4903 5.3916 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0035 4.1428 -1.3744 32 1 2.7878 3.5281 3.2764 33 1 3.3771 2.6513 6.7720 34 1 4.1087 3.4315 5.3299 35 1 2.3230 5.0374 5.1471 36 1 2.4836 4.8918 6.9242 37 1 0.9560 7.3648 7.0528 38 1 0.5887 1.7053 6.0869 39 1 0.2005 2.5175 4.5447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016134059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:58 Heat of formation + Delta-G solvation = 16.870085 kcal Electronic energy + Delta-G solvation = -21835.325091 eV Core-core repulsion = 18585.305131 eV Total energy + Delta-G solvation = -3250.019960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.22953 -40.72254 -38.80357 -35.80068 -35.00948 -33.76511 -32.87649 -31.07421 -30.11551 -28.90277 -26.55610 -25.13998 -23.80513 -22.60887 -22.14835 -21.32369 -20.67350 -19.74845 -18.86233 -17.48314 -17.06733 -16.74370 -16.64791 -15.89333 -15.76602 -15.42035 -15.34014 -14.86181 -14.71335 -14.35322 -14.29640 -13.81777 -13.43796 -13.30159 -13.02407 -12.80240 -12.40921 -12.38303 -12.22614 -12.01786 -11.91538 -11.89506 -11.64255 -11.48159 -11.02835 -10.87768 -10.70906 -10.23199 -9.52100 -8.88501 -7.92390 -5.25868 0.26553 1.44629 1.45422 1.55211 1.84269 1.91159 2.14364 2.26230 2.47114 3.27988 3.50641 3.62590 3.72115 3.82171 4.02284 4.09904 4.20941 4.27548 4.49949 4.55141 4.62173 4.65545 4.70466 4.76745 4.88405 4.96518 5.00434 5.07636 5.25683 5.31396 5.41511 5.49989 5.53729 5.56628 5.69629 6.17735 6.31541 6.43954 6.91845 7.05981 7.09224 7.72498 8.38140 9.19251 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.004205 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.913235 B = 6657.438213 C = 6703.874039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.239 3.761 6 N -0.544 5.544 7 H 0.437 0.563 8 C -0.109 4.109 9 C 0.593 3.407 10 O -0.555 6.555 11 N -0.703 5.703 12 C 0.148 3.852 13 H 0.104 0.896 14 C -0.133 4.133 15 C 0.177 3.823 16 N -0.621 5.621 17 C -0.248 4.248 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.942 5.942 21 Si 0.973 3.027 22 H -0.288 1.288 23 H -0.273 1.273 24 H -0.289 1.289 25 C 0.125 3.875 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.263 0.737 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.008 0.992 36 H 0.038 0.962 37 H 0.250 0.750 38 H 0.032 0.968 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -5.747 -12.833 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 C -0.049 4.049 4 N -0.251 5.251 5 C -0.045 4.045 6 N -0.149 5.149 7 H 0.279 0.721 8 C -0.226 4.226 9 C 0.381 3.619 10 O -0.433 6.433 11 N -0.354 5.354 12 C 0.043 3.957 13 H 0.122 0.878 14 C -0.171 4.171 15 C 0.052 3.948 16 N -0.347 5.347 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.591 5.591 21 Si 0.801 3.199 22 H -0.215 1.215 23 H -0.198 1.198 24 H -0.215 1.215 25 C -0.001 4.001 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.279 0.721 32 H 0.239 0.761 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.026 0.974 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 7.467 -6.632 -13.295 16.628 hybrid contribution -0.614 1.874 1.603 2.542 sum 6.853 -4.758 -11.692 14.363 Atomic orbital electron populations 1.21551 0.94238 1.02439 1.00679 1.20032 0.96350 0.88785 1.03428 1.21247 0.98974 0.97540 0.87164 1.70130 1.20268 1.04195 1.30497 1.26100 0.98395 0.97815 0.82224 1.43329 1.49456 1.12904 1.09253 0.72118 1.20754 1.17717 0.89898 0.94182 1.17055 0.76998 0.84580 0.83301 1.90779 1.47696 1.21372 1.83466 1.45759 1.67059 1.16892 1.05642 1.21777 0.94365 0.99797 0.79768 0.87776 1.23232 0.97962 0.96357 0.99571 1.21314 0.82648 0.92206 0.98608 1.44753 1.07239 1.18657 1.64079 1.19335 0.93235 0.94211 1.30960 0.91204 1.25536 1.00576 0.96109 1.02624 1.70091 1.31825 1.07383 1.49761 0.85153 0.78461 0.77948 0.78292 1.21507 1.19785 1.21483 1.21791 0.95986 0.88275 0.94079 0.90584 0.94873 0.92761 0.89556 0.90083 0.72108 0.76132 0.89315 0.88084 0.97386 0.94355 0.94107 0.95032 0.97639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.89 71.98 0.71 -2.61 16 2 C -0.05 -1.24 5.93 29.85 0.18 -1.07 16 3 C 0.09 2.37 6.40 41.97 0.27 2.64 16 4 N -0.53 -13.13 11.20 -187.59 -2.10 -15.23 16 5 C 0.24 3.98 13.01 180.33 2.35 6.33 16 6 N -0.54 -9.98 6.07 -188.04 -1.14 -11.12 16 7 H 0.44 5.49 8.32 -92.71 -0.77 4.72 16 8 C -0.11 -2.95 7.08 40.01 0.28 -2.67 16 9 C 0.59 18.65 7.79 86.47 0.67 19.32 16 10 O -0.55 -20.45 14.55 -4.29 -0.06 -20.51 16 11 N -0.70 -20.66 5.11 -440.81 -2.25 -22.91 16 12 C 0.15 4.91 3.24 46.18 0.15 5.06 16 13 H 0.10 3.28 7.70 -2.39 -0.02 3.26 16 14 C -0.13 -4.21 6.65 32.06 0.21 -4.00 16 15 C 0.18 7.91 5.40 86.93 0.47 8.38 16 16 N -0.62 -31.22 3.39 -691.55 -2.35 -33.56 16 17 C -0.25 -13.93 10.24 84.03 0.86 -13.07 16 18 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 19 C -0.05 -3.03 5.41 84.86 0.46 -2.57 16 20 N -0.94 -54.05 10.67 21.65 0.23 -53.81 16 21 Si 0.97 45.06 29.56 68.60 2.03 47.09 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 C 0.13 5.36 6.98 86.73 0.61 5.96 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.32 6.49 -2.39 -0.02 2.30 16 31 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.40 10.19 7.86 -92.71 -0.73 9.46 16 33 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.01 0.38 8.07 -2.39 -0.02 0.36 16 36 H 0.04 1.96 6.94 -2.39 -0.02 1.94 16 37 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 38 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.01 0.26 8.04 -2.39 -0.02 0.24 16 Total: -1.00 -73.08 324.52 1.15 -71.93 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.42 Total: 16.44 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.22 Total: 21.70 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -7.61 Total: -136.64 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.08 1.15 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016134059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.796 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds