Wall clock time and date at job start Tue Mar 31 2020 00:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47006 * 2 1 4 4 C 1.35363 * 126.38618 * 275.15408 * 3 2 1 5 5 C 1.41507 * 105.50109 * 180.24709 * 4 3 2 6 6 C 1.47706 * 126.51489 * 179.79865 * 5 4 3 7 7 O 1.21568 * 120.00695 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.47028 * 125.64579 * 359.68867 * 8 6 5 10 10 C 1.54334 * 107.26440 * 178.84799 * 9 8 6 11 11 C 1.55158 * 103.02207 * 338.14315 * 10 9 8 12 12 H 1.08994 * 111.00200 * 277.23271 * 11 10 9 13 13 N 1.46496 * 111.00466 * 153.37901 * 11 10 9 14 14 C 1.36938 * 120.00110 * 161.34861 * 13 11 10 15 15 H 1.07997 * 120.00145 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00097 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00251 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47251 * 59.99935 * 18 16 14 20 20 H 1.48501 * 109.47076 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46720 * 299.99841 * 18 16 14 22 22 C 1.47416 * 125.65055 * 179.97438 * 8 6 5 23 23 N 1.31809 * 106.95972 * 359.77333 * 5 4 3 24 24 N 1.28466 * 110.07776 * 359.97438 * 23 5 4 25 25 H 0.97001 * 124.88210 * 179.97438 * 24 23 5 26 26 H 1.09000 * 109.47118 * 299.99805 * 1 2 3 27 27 H 1.09005 * 109.47274 * 60.00103 * 1 2 3 28 28 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47118 * 240.00195 * 2 1 3 30 30 H 1.08996 * 109.47271 * 120.00512 * 2 1 3 31 31 H 1.07997 * 127.25187 * 0.04963 * 4 3 2 32 32 H 1.08990 * 109.88209 * 298.39817 * 9 8 6 33 33 H 1.09002 * 109.87986 * 59.55962 * 9 8 6 34 34 H 1.08999 * 110.85350 * 219.67604 * 10 9 8 35 35 H 1.08998 * 110.51314 * 96.45002 * 10 9 8 36 36 H 0.97002 * 120.00027 * 341.35095 * 13 11 10 37 37 H 0.96998 * 120.00103 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.37055 * 322.93581 * 22 8 6 39 39 H 1.09006 * 110.36635 * 85.14656 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2077 2.2106 -1.0853 5 6 2.6966 3.4400 -0.5834 6 6 3.0500 4.6349 -1.3766 7 8 2.9299 4.6190 -2.5862 8 7 3.5058 5.7429 -0.7592 9 6 3.6926 5.9005 0.6906 10 6 4.2575 7.3170 0.9283 11 6 4.8820 7.6793 -0.4450 12 1 5.8819 7.2569 -0.5431 13 7 4.9052 9.1304 -0.6448 14 6 5.7369 9.6790 -1.5843 15 1 6.3754 9.0419 -2.1782 16 6 5.7586 11.0539 -1.7739 17 7 4.9800 11.8304 -1.0505 18 14 6.8926 11.8022 -3.0559 19 1 6.5508 11.2606 -4.3957 20 1 6.7280 13.2781 -3.0613 21 1 8.3010 11.4629 -2.7293 22 6 3.8940 6.9994 -1.4252 23 7 2.7761 3.3162 0.7264 24 7 2.3885 2.1445 1.0830 25 1 2.3604 1.8241 1.9981 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0178 1.9550 -2.1173 32 1 2.7364 5.7900 1.2017 33 1 4.3991 5.1554 1.0565 34 1 5.0197 7.3050 1.7074 35 1 3.4557 8.0103 1.1823 36 1 4.3315 9.7027 -0.1116 37 1 4.9954 12.7912 -1.1828 38 1 4.3859 6.7893 -2.3749 39 1 3.0195 7.6308 -1.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018530542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:55 Heat of formation + Delta-G solvation = 50.164796 kcal Electronic energy + Delta-G solvation = -21121.185315 eV Core-core repulsion = 17872.609123 eV Total energy + Delta-G solvation = -3248.576193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.81746 -39.39443 -37.11194 -34.67570 -34.04234 -32.10410 -31.32943 -29.64874 -29.45087 -27.52868 -24.76356 -24.10795 -23.15573 -21.98863 -21.22419 -20.04276 -18.78004 -17.85472 -17.27387 -16.54425 -16.08553 -15.59015 -15.05877 -14.82334 -14.44266 -14.05191 -13.91593 -13.60233 -13.33179 -13.09969 -12.86186 -12.71303 -12.31062 -12.11797 -11.99934 -11.62087 -11.44572 -11.02126 -10.88692 -10.73390 -10.63578 -10.26124 -10.00197 -9.86582 -9.69974 -9.48415 -9.13642 -8.96308 -8.22655 -7.03339 -5.79574 -3.10066 1.56358 1.97923 2.65999 3.30486 3.45797 3.49893 3.51265 3.58260 4.23692 4.37568 4.53311 4.59094 4.82680 4.99442 5.10648 5.14197 5.27631 5.39633 5.42561 5.47009 5.51549 5.66270 5.73543 5.79631 5.82632 5.93286 6.10122 6.21418 6.24752 6.34792 6.48908 6.62014 6.67936 6.82911 6.96852 7.69674 7.70499 7.87181 8.38055 8.44471 9.50118 10.03696 10.38890 11.42526 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045487 B = 0.003176 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.415629 B = 8814.940084 C = 9183.426874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.176 4.176 5 C 0.001 3.999 6 C 0.608 3.392 7 O -0.539 6.539 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.142 4.142 11 C 0.172 3.828 12 H 0.064 0.936 13 N -0.712 5.712 14 C -0.247 4.247 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.083 3.917 23 N -0.254 5.254 24 N -0.384 5.384 25 H 0.442 0.558 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -24.004 7.665 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.204 4.204 5 C -0.161 4.161 6 C 0.394 3.606 7 O -0.415 6.415 8 N -0.333 5.333 9 C -0.007 4.007 10 C -0.181 4.181 11 C 0.060 3.940 12 H 0.082 0.918 13 N -0.352 5.352 14 C -0.378 4.378 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.740 3.260 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.042 4.042 23 N -0.089 5.089 24 N -0.098 5.098 25 H 0.286 0.714 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.178 0.822 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.226 -23.347 7.764 25.643 hybrid contribution 0.092 0.053 -0.669 0.677 sum -7.134 -23.294 7.095 25.374 Atomic orbital electron populations 1.21790 0.94042 1.02200 1.02743 1.20104 0.96421 0.88746 1.03917 1.21418 1.05752 0.96799 0.87419 1.21502 1.06818 0.92333 0.99790 1.21994 1.07418 0.96849 0.89804 1.16544 0.77690 0.80473 0.85938 1.90787 1.55061 1.82631 1.13069 1.48373 1.62859 1.13223 1.08846 1.21989 1.00683 0.97491 0.80575 1.22944 1.00885 0.94880 0.99349 1.21309 0.95713 0.86419 0.90589 0.91776 1.42302 1.48883 0.99253 1.44754 1.19225 1.15759 0.90490 1.12294 0.90965 1.24765 0.99864 0.96136 0.99818 1.69652 1.41658 1.03933 1.42665 0.86242 0.80361 0.78060 0.81373 1.21081 1.21671 1.21171 1.23450 0.99744 0.82596 0.98425 1.73721 1.17856 1.02153 1.15195 1.43364 1.47792 1.08948 1.09718 0.71367 0.92697 0.91801 0.91784 0.89056 0.90714 0.82155 0.91573 0.91357 0.90264 0.90582 0.77843 0.93338 0.90928 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.05 -0.27 6.49 -27.88 -0.18 -0.45 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.16 10.73 -39.36 -0.42 -2.58 16 5 C 0.00 0.01 6.98 -82.76 -0.58 -0.57 16 6 C 0.61 11.12 7.86 -12.39 -0.10 11.02 16 7 O -0.54 -11.47 17.18 5.31 0.09 -11.38 16 8 N -0.60 -10.66 3.33 -171.69 -0.57 -11.23 16 9 C 0.12 1.73 5.55 -3.06 -0.02 1.71 16 10 C -0.14 -2.28 6.57 -24.89 -0.16 -2.44 16 11 C 0.17 3.45 3.69 -65.79 -0.24 3.21 16 12 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 13 N -0.71 -17.66 5.28 -51.36 -0.27 -17.93 16 14 C -0.25 -6.82 9.98 -15.06 -0.15 -6.97 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 18 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 C 0.08 1.66 6.60 -2.54 -0.02 1.64 16 23 N -0.25 -3.19 9.76 33.42 0.33 -2.87 16 24 N -0.38 -3.38 6.83 33.50 0.23 -3.15 16 25 H 0.44 2.17 8.96 -190.44 -1.71 0.47 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.07 0.93 7.78 -51.93 -0.40 0.52 16 33 H 0.07 0.95 7.65 -51.93 -0.40 0.56 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 36 H 0.39 10.09 7.71 -40.82 -0.31 9.77 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -33.71 330.08 -8.66 -42.37 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.01 Total: 5.57 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.13 Total: 3.40 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.44 Total: -62.37 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.71 -8.66 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018530542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.534 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds