Wall clock time and date at job start Tue Mar 31 2020 00:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47006 * 2 1 4 4 C 1.35363 * 126.38618 * 275.15408 * 3 2 1 5 5 C 1.41507 * 105.50109 * 180.24709 * 4 3 2 6 6 C 1.47706 * 126.51489 * 179.79865 * 5 4 3 7 7 O 1.21568 * 120.00695 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.47028 * 125.64579 * 359.68867 * 8 6 5 10 10 C 1.54334 * 107.26440 * 178.84799 * 9 8 6 11 11 C 1.55158 * 103.02207 * 338.14315 * 10 9 8 12 12 H 1.08994 * 111.00200 * 277.23271 * 11 10 9 13 13 N 1.46496 * 111.00466 * 153.37901 * 11 10 9 14 14 C 1.36938 * 120.00110 * 161.34861 * 13 11 10 15 15 H 1.07997 * 120.00145 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00097 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00251 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47251 * 59.99935 * 18 16 14 20 20 H 1.48501 * 109.47076 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46720 * 299.99841 * 18 16 14 22 22 C 1.47416 * 125.65055 * 179.97438 * 8 6 5 23 23 N 1.31809 * 106.95972 * 359.77333 * 5 4 3 24 24 N 1.28466 * 110.07776 * 359.97438 * 23 5 4 25 25 H 0.97001 * 124.88210 * 179.97438 * 24 23 5 26 26 H 1.09000 * 109.47118 * 299.99805 * 1 2 3 27 27 H 1.09005 * 109.47274 * 60.00103 * 1 2 3 28 28 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47118 * 240.00195 * 2 1 3 30 30 H 1.08996 * 109.47271 * 120.00512 * 2 1 3 31 31 H 1.07997 * 127.25187 * 0.04963 * 4 3 2 32 32 H 1.08990 * 109.88209 * 298.39817 * 9 8 6 33 33 H 1.09002 * 109.87986 * 59.55962 * 9 8 6 34 34 H 1.08999 * 110.85350 * 219.67604 * 10 9 8 35 35 H 1.08998 * 110.51314 * 96.45002 * 10 9 8 36 36 H 0.97002 * 120.00027 * 341.35095 * 13 11 10 37 37 H 0.96998 * 120.00103 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.37055 * 322.93581 * 22 8 6 39 39 H 1.09006 * 110.36635 * 85.14656 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2077 2.2106 -1.0853 5 6 2.6966 3.4400 -0.5834 6 6 3.0500 4.6349 -1.3766 7 8 2.9299 4.6190 -2.5862 8 7 3.5058 5.7429 -0.7592 9 6 3.6926 5.9005 0.6906 10 6 4.2575 7.3170 0.9283 11 6 4.8820 7.6793 -0.4450 12 1 5.8819 7.2569 -0.5431 13 7 4.9052 9.1304 -0.6448 14 6 5.7369 9.6790 -1.5843 15 1 6.3754 9.0419 -2.1782 16 6 5.7586 11.0539 -1.7739 17 7 4.9800 11.8304 -1.0505 18 14 6.8926 11.8022 -3.0559 19 1 6.5508 11.2606 -4.3957 20 1 6.7280 13.2781 -3.0613 21 1 8.3010 11.4629 -2.7293 22 6 3.8940 6.9994 -1.4252 23 7 2.7761 3.3162 0.7264 24 7 2.3885 2.1445 1.0830 25 1 2.3604 1.8241 1.9981 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0178 1.9550 -2.1173 32 1 2.7364 5.7900 1.2017 33 1 4.3991 5.1554 1.0565 34 1 5.0197 7.3050 1.7074 35 1 3.4557 8.0103 1.1823 36 1 4.3315 9.7027 -0.1116 37 1 4.9954 12.7912 -1.1828 38 1 4.3859 6.7893 -2.3749 39 1 3.0195 7.6308 -1.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018530542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:53 Heat of formation + Delta-G solvation = 26.210275 kcal Electronic energy + Delta-G solvation = -21122.224061 eV Core-core repulsion = 17872.609123 eV Total energy + Delta-G solvation = -3249.614939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.71181 -40.84583 -38.65926 -35.97965 -35.18434 -33.50857 -32.76189 -31.13760 -30.35103 -29.11506 -26.39923 -24.94973 -24.54346 -23.27853 -22.02986 -21.66428 -20.10438 -19.24033 -18.69925 -17.79273 -17.48157 -16.76734 -16.53018 -16.17832 -15.48891 -15.31116 -15.16105 -14.88140 -14.72515 -14.36523 -14.20784 -13.78808 -13.76405 -13.29854 -13.14808 -12.86155 -12.60971 -12.47236 -12.37721 -12.10861 -12.03539 -11.79436 -11.71011 -11.56529 -11.31961 -10.99057 -10.46103 -9.95952 -9.70005 -9.08904 -7.97228 -5.27597 0.47983 1.10004 1.47727 1.50635 1.56446 1.74517 2.13688 2.29215 2.55685 3.24493 3.35475 3.64116 3.68694 3.82627 3.98962 4.08081 4.27201 4.32534 4.37469 4.43912 4.53076 4.55587 4.68774 4.75284 4.82694 4.88628 5.01165 5.09743 5.13618 5.18556 5.23316 5.30925 5.37634 5.42289 5.52076 6.12338 6.24267 6.46028 6.79479 7.06302 7.31643 8.02047 8.27476 9.25312 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045487 B = 0.003176 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.415629 B = 8814.940084 C = 9183.426874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.039 3.961 4 C -0.202 4.202 5 C -0.031 4.031 6 C 0.602 3.398 7 O -0.582 6.582 8 N -0.602 5.602 9 C 0.125 3.875 10 C -0.128 4.128 11 C 0.168 3.832 12 H 0.063 0.937 13 N -0.722 5.722 14 C -0.249 4.249 15 H 0.074 0.926 16 C -0.069 4.069 17 N -0.965 5.965 18 Si 0.972 3.028 19 H -0.282 1.282 20 H -0.293 1.293 21 H -0.275 1.275 22 C 0.093 3.907 23 N -0.257 5.257 24 N -0.361 5.361 25 H 0.462 0.538 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.158 0.842 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.379 0.621 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -26.667 9.419 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.087 4.087 4 C -0.230 4.230 5 C -0.190 4.190 6 C 0.390 3.610 7 O -0.462 6.462 8 N -0.335 5.335 9 C 0.003 3.997 10 C -0.167 4.167 11 C 0.057 3.943 12 H 0.081 0.919 13 N -0.361 5.361 14 C -0.381 4.381 15 H 0.092 0.908 16 C -0.261 4.261 17 N -0.615 5.615 18 Si 0.800 3.200 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.201 1.201 22 C -0.033 4.033 23 N -0.094 5.094 24 N -0.078 5.078 25 H 0.311 0.689 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.176 0.824 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.212 0.788 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.198 -26.064 9.564 28.682 hybrid contribution 0.027 0.713 -1.156 1.359 sum -7.171 -25.351 8.408 27.655 Atomic orbital electron populations 1.21788 0.93728 1.03220 1.01996 1.20295 0.96465 0.86219 1.05900 1.21843 1.03084 0.97773 0.86026 1.21652 1.08149 0.92227 1.00946 1.21546 1.10346 0.96388 0.90759 1.17074 0.76758 0.81285 0.85847 1.90743 1.56821 1.83543 1.15052 1.48408 1.62789 1.12354 1.09907 1.22076 1.01858 0.97007 0.78797 1.22883 1.01165 0.95365 0.97265 1.21432 0.95873 0.83897 0.93106 0.91862 1.42409 1.48385 1.01116 1.44208 1.19569 1.15457 0.90807 1.12275 0.90782 1.25541 1.01778 0.96710 1.02107 1.69794 1.43479 1.03777 1.44437 0.85247 0.78907 0.76834 0.78978 1.20813 1.21934 1.20117 1.23051 0.98737 0.83752 0.97758 1.73598 1.18137 1.03800 1.13908 1.43464 1.45676 1.07776 1.10924 0.68896 0.92683 0.93369 0.89925 0.88128 0.87709 0.82447 0.90050 0.89610 0.87965 0.90674 0.78823 0.93825 0.93187 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 71.98 0.71 -0.30 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.13 16 3 C 0.04 0.59 6.48 41.40 0.27 0.85 16 4 C -0.20 -4.76 10.73 22.41 0.24 -4.52 16 5 C -0.03 -0.92 6.98 42.46 0.30 -0.62 16 6 C 0.60 22.52 7.86 86.74 0.68 23.20 16 7 O -0.58 -25.95 17.18 -3.93 -0.07 -26.02 16 8 N -0.60 -21.56 3.33 -815.36 -2.71 -24.28 16 9 C 0.12 3.52 5.55 86.73 0.48 4.00 16 10 C -0.13 -3.94 6.57 31.79 0.21 -3.73 16 11 C 0.17 6.76 3.69 46.38 0.17 6.94 16 12 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 13 N -0.72 -36.40 5.28 -316.42 -1.67 -38.07 16 14 C -0.25 -13.97 9.98 84.03 0.84 -13.13 16 15 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 16 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 17 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 18 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.09 3.85 6.60 86.85 0.57 4.42 16 23 N -0.26 -5.90 9.76 -48.18 -0.47 -6.37 16 24 N -0.36 -5.16 6.83 -47.93 -0.33 -5.49 16 25 H 0.46 2.57 8.96 -219.99 -1.97 0.60 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.08 2.10 7.78 -2.39 -0.02 2.08 16 33 H 0.09 2.17 7.65 -2.39 -0.02 2.15 16 34 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.35 8.00 -2.39 -0.02 2.34 16 36 H 0.38 20.15 7.71 -92.71 -0.71 19.43 16 37 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 39 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -75.15 330.08 0.58 -74.56 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -1.61 Total: 22.03 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.13 Total: 13.50 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -4.90 Total: -132.76 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.15 0.58 -74.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018530542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.774 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds