Wall clock time and date at job start Tue Mar 31 2020 00:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47504 * 2 1 4 4 N 1.33322 * 126.10727 * 270.02395 * 3 2 1 5 5 C 1.30850 * 109.68930 * 179.97438 * 4 3 2 6 6 N 1.34499 * 109.16316 * 359.73097 * 5 4 3 7 7 H 0.97002 * 126.47646 * 180.29186 * 6 5 4 8 8 C 1.36658 * 126.11090 * 89.99990 * 3 2 1 9 9 C 1.46768 * 126.84434 * 0.02562 * 8 3 2 10 10 O 1.21681 * 119.99926 * 353.75675 * 9 8 3 11 11 N 1.34777 * 120.00370 * 173.75059 * 9 8 3 12 12 C 1.47426 * 125.64531 * 354.52504 * 11 9 8 13 13 C 1.54906 * 104.83316 * 204.09126 * 12 11 9 14 14 C 1.55398 * 101.66491 * 323.07590 * 13 12 11 15 15 H 1.09004 * 110.69583 * 277.04632 * 14 13 12 16 16 N 1.46501 * 110.85600 * 153.70150 * 14 13 12 17 17 C 1.36937 * 120.00583 * 160.08783 * 16 14 13 18 18 H 1.08008 * 119.99432 * 359.97438 * 17 16 14 19 19 C 1.38802 * 120.00208 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00292 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46997 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46881 * 119.99935 * 21 19 17 24 24 H 1.48500 * 109.47081 * 239.99891 * 21 19 17 25 25 C 1.47013 * 125.65031 * 174.48025 * 11 9 8 26 26 H 1.09005 * 109.46758 * 59.99697 * 1 2 3 27 27 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47005 * 300.00716 * 1 2 3 29 29 H 1.09002 * 109.47005 * 239.99284 * 2 1 3 30 30 H 1.09002 * 109.46706 * 119.99530 * 2 1 3 31 31 H 1.08005 * 125.42101 * 179.97438 * 5 4 3 32 32 H 1.09009 * 110.37008 * 322.93166 * 12 11 9 33 33 H 1.09002 * 110.36732 * 85.14053 * 12 11 9 34 34 H 1.09002 * 111.00286 * 81.06707 * 13 12 11 35 35 H 1.09001 * 111.00655 * 204.91857 * 13 12 11 36 36 H 0.97000 * 119.99618 * 340.07784 * 16 14 13 37 37 H 0.96997 * 119.99989 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.88678 * 298.39735 * 25 11 9 39 39 H 1.09007 * 109.88118 * 59.41160 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2939 2.1616 -1.0771 5 6 2.7120 3.3451 -0.7073 6 7 2.7280 3.4077 0.6361 7 1 2.9918 4.1701 1.1748 8 6 2.3009 2.1801 1.1040 9 6 2.1580 1.7743 2.5072 10 8 1.6570 0.6999 2.7819 11 7 2.5817 2.5916 3.4917 12 6 3.3055 3.8618 3.3018 13 6 4.0798 4.0787 4.6259 14 6 3.0664 3.5412 5.6742 15 1 2.3314 4.3055 5.9266 16 7 3.7594 3.0698 6.8757 17 6 3.0755 2.9426 8.0552 18 1 2.0252 3.1902 8.0998 19 6 3.7322 2.4955 9.1935 20 7 5.0120 2.1933 9.1390 21 14 2.7993 2.3226 10.8027 22 1 1.3836 2.7222 10.5995 23 1 2.8541 0.9099 11.2573 24 1 3.4186 3.1977 11.8303 25 6 2.3977 2.3645 4.9324 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9951 4.1457 -1.3746 32 1 3.9997 3.7815 2.4652 33 1 2.6025 4.6776 3.1335 34 1 5.0003 3.4950 4.6403 35 1 4.2871 5.1363 4.7886 36 1 4.7028 2.8477 6.8357 37 1 5.4709 1.8813 9.9346 38 1 1.3345 2.3327 5.1700 39 1 2.8706 1.4264 5.2232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019714785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:24 Heat of formation + Delta-G solvation = 16.892447 kcal Electronic energy + Delta-G solvation = -21615.208045 eV Core-core repulsion = 18365.189055 eV Total energy + Delta-G solvation = -3250.018990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.30842 -40.77966 -38.73755 -36.13901 -35.14352 -33.58744 -32.86648 -31.29339 -30.21646 -29.03987 -26.28171 -25.09993 -24.18531 -23.04592 -22.48651 -21.39665 -20.36587 -19.42220 -18.65742 -17.66858 -17.47851 -16.67828 -16.60863 -16.08865 -15.74143 -15.40077 -15.17966 -14.91956 -14.75903 -14.44045 -14.27950 -13.95802 -13.52981 -13.31822 -13.21381 -12.93723 -12.65729 -12.46967 -12.40345 -12.11461 -11.99017 -11.79604 -11.69866 -11.47744 -11.08212 -11.01479 -10.91804 -9.93428 -9.46970 -9.12970 -7.99728 -5.30077 0.23526 1.46198 1.48141 1.57045 1.70218 1.83302 2.07435 2.20784 2.53636 3.30036 3.42587 3.51939 3.56361 3.79749 3.91266 4.07370 4.18023 4.20179 4.26788 4.41000 4.47035 4.49091 4.54704 4.66981 4.74929 4.81447 4.89954 5.04651 5.10671 5.17400 5.22507 5.29740 5.31951 5.49940 5.50547 6.22133 6.33274 6.37642 6.88479 6.98117 7.29385 8.00651 8.23213 9.23344 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030190 B = 0.003791 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.237879 B = 7384.187938 C = 8017.045978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.050 4.050 3 C 0.086 3.914 4 N -0.530 5.530 5 C 0.241 3.759 6 N -0.545 5.545 7 H 0.438 0.562 8 C -0.102 4.102 9 C 0.596 3.404 10 O -0.566 6.566 11 N -0.614 5.614 12 C 0.092 3.908 13 C -0.126 4.126 14 C 0.166 3.834 15 H 0.077 0.923 16 N -0.725 5.725 17 C -0.247 4.247 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.297 1.297 24 H -0.290 1.290 25 C 0.095 3.905 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.268 0.732 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.049 0.951 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 7.882 -21.013 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.048 4.048 4 N -0.250 5.250 5 C -0.043 4.043 6 N -0.155 5.155 7 H 0.284 0.716 8 C -0.218 4.218 9 C 0.386 3.614 10 O -0.445 6.445 11 N -0.347 5.347 12 C -0.030 4.030 13 C -0.165 4.165 14 C 0.056 3.944 15 H 0.095 0.905 16 N -0.364 5.364 17 C -0.378 4.378 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.225 1.225 24 H -0.217 1.217 25 C -0.031 4.031 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.284 0.716 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.381 7.044 -21.529 23.072 hybrid contribution 0.290 -0.065 2.391 2.410 sum -4.091 6.980 -19.138 20.778 Atomic orbital electron populations 1.21530 0.93749 1.02396 1.00960 1.20003 0.96849 0.89063 1.02882 1.21161 0.99019 0.97371 0.87287 1.70127 1.20276 1.04289 1.30324 1.26197 0.98067 0.97729 0.82333 1.43803 1.49922 1.12513 1.09272 0.71588 1.20517 1.17853 0.90100 0.93342 1.16934 0.78109 0.83215 0.83153 1.90798 1.47210 1.23163 1.83368 1.48465 1.56687 1.23394 1.06141 1.22760 0.95653 0.85397 0.99172 1.23020 0.97578 1.03586 0.92275 1.21468 0.94515 0.92431 0.86028 0.90542 1.42520 1.09816 1.78762 1.05297 1.19669 0.94196 1.36101 0.87870 0.90326 1.25533 0.96780 1.02434 1.01445 1.69805 1.09942 1.52613 1.29292 0.85136 0.78358 0.76682 0.79950 1.18961 1.22495 1.21708 1.22857 1.00047 1.01082 0.79089 0.92217 0.90941 0.94560 0.89602 0.91220 0.71635 0.88716 0.87588 0.91506 0.86754 0.79122 0.93920 0.93241 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.89 71.98 0.71 -2.40 16 2 C -0.05 -1.31 5.87 29.85 0.18 -1.14 16 3 C 0.09 2.32 6.40 41.96 0.27 2.58 16 4 N -0.53 -12.03 11.20 -187.59 -2.10 -14.13 16 5 C 0.24 3.25 13.01 180.33 2.35 5.59 16 6 N -0.55 -8.32 5.43 -188.04 -1.02 -9.34 16 7 H 0.44 3.80 5.54 -92.71 -0.51 3.28 16 8 C -0.10 -2.65 6.82 40.01 0.27 -2.38 16 9 C 0.60 19.61 7.81 86.47 0.68 20.29 16 10 O -0.57 -23.07 15.24 -4.29 -0.07 -23.13 16 11 N -0.61 -18.29 3.33 -816.38 -2.72 -21.01 16 12 C 0.09 1.74 5.28 86.85 0.46 2.20 16 13 C -0.13 -3.10 6.71 32.07 0.22 -2.89 16 14 C 0.17 5.86 3.60 46.27 0.17 6.02 16 15 H 0.08 2.57 8.12 -2.38 -0.02 2.56 16 16 N -0.73 -34.45 5.18 -316.91 -1.64 -36.10 16 17 C -0.25 -13.18 9.98 84.03 0.84 -12.34 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 20 N -0.97 -57.88 13.06 21.65 0.28 -57.59 16 21 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.10 3.54 6.62 86.73 0.57 4.12 16 26 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.15 6.63 -2.39 -0.02 2.13 16 31 H 0.27 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.09 1.30 6.21 -2.38 -0.01 1.29 16 33 H 0.11 1.30 7.88 -2.39 -0.02 1.28 16 34 H 0.07 1.85 8.01 -2.39 -0.02 1.83 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.38 19.30 7.72 -92.71 -0.72 18.59 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.60 8.03 -2.38 -0.02 1.58 16 Total: -1.00 -75.97 322.98 1.79 -74.18 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.15 Total: 23.49 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.17 Total: 16.25 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -7.20 Total: -138.17 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.07 Total: -23.13 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -75.97 1.79 -74.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019714785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.073 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds