Wall clock time and date at job start Tue Mar 31 2020 00:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38042 * 126.29341 * 2 1 4 4 C 1.47425 * 126.41558 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99631 * 359.72461 * 4 3 2 6 6 N 1.34775 * 120.00379 * 179.71947 * 4 3 2 7 7 C 1.46493 * 120.00228 * 180.02562 * 6 4 3 8 8 H 1.09004 * 112.90930 * 23.74380 * 7 6 4 9 9 C 1.53783 * 113.61843 * 154.99836 * 7 6 4 10 10 C 1.53784 * 87.08338 * 89.11341 * 9 7 6 11 11 H 1.09002 * 113.61454 * 270.80589 * 10 9 7 12 12 N 1.46499 * 113.61491 * 139.98310 * 10 9 7 13 13 C 1.36939 * 119.99933 * 155.27848 * 12 10 9 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 10 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 10 16 16 N 1.31612 * 120.00054 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47517 * 89.99708 * 17 15 13 19 19 H 1.48502 * 109.46736 * 209.99481 * 17 15 13 20 20 H 1.48496 * 109.47375 * 329.99177 * 17 15 13 21 21 C 1.53780 * 113.61430 * 252.49415 * 7 6 4 22 22 C 1.41297 * 107.17227 * 179.75673 * 3 2 1 23 23 N 1.30445 * 108.01918 * 0.23421 * 22 3 2 24 24 N 1.34264 * 126.29217 * 180.16875 * 2 1 3 25 25 C 1.46500 * 125.75209 * 359.96201 * 24 2 1 26 26 H 1.09000 * 109.46621 * 90.00466 * 1 2 3 27 27 H 1.08992 * 109.47265 * 210.00639 * 1 2 3 28 28 H 1.08999 * 109.47078 * 330.00722 * 1 2 3 29 29 H 0.97001 * 119.99938 * 0.02562 * 6 4 3 30 30 H 1.09000 * 113.60825 * 334.56902 * 9 7 6 31 31 H 1.08999 * 113.69620 * 203.67612 * 9 7 6 32 32 H 0.97001 * 119.99790 * 334.99822 * 12 10 9 33 33 H 0.96998 * 120.00381 * 180.02562 * 16 15 13 34 34 H 1.08998 * 113.61772 * 156.33432 * 21 7 6 35 35 H 1.09001 * 113.61751 * 25.43490 * 21 7 6 36 36 H 1.07993 * 125.98828 * 180.23549 * 22 3 2 37 37 H 1.08999 * 109.47283 * 270.30808 * 25 24 2 38 38 H 1.09000 * 109.47110 * 30.30683 * 25 24 2 39 39 H 1.08995 * 109.47065 * 150.30864 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 -0.0040 6 7 2.8000 3.5106 0.0062 7 6 2.3645 4.9094 0.0073 8 1 1.3593 5.0405 0.4078 9 6 3.3983 5.8760 0.6089 10 6 3.9856 6.0043 -0.8066 11 1 4.7538 5.2638 -1.0294 12 7 4.3934 7.3685 -1.1513 13 6 5.3553 7.5756 -2.1038 14 1 5.8163 6.7330 -2.5977 15 6 5.7376 8.8683 -2.4345 16 7 6.6624 9.0673 -3.3496 17 14 4.9405 10.3256 -1.5798 18 1 5.7186 10.6724 -0.3635 19 1 4.9190 11.4892 -2.5022 20 1 3.5502 9.9737 -1.1945 21 6 2.5915 5.6262 -1.3342 22 6 3.6591 0.6498 0.0057 23 7 3.6340 -0.6544 0.0039 24 7 2.3017 -1.0822 -0.0032 25 6 1.8501 -2.4758 -0.0065 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 3.7462 3.2973 0.0095 30 1 4.0748 5.4037 1.3211 31 1 2.9643 6.8016 0.9871 32 1 3.9793 8.1252 -0.7077 33 1 6.9298 9.9706 -3.5805 34 1 1.9356 6.4831 -1.4878 35 1 2.6166 4.9524 -2.1906 36 1 4.5449 1.2675 0.0108 37 1 1.7334 -2.8224 1.0203 38 1 0.8938 -2.5466 -0.5248 39 1 2.5870 -3.0953 -0.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019991845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:21 Heat of formation + Delta-G solvation = 74.944806 kcal Electronic energy + Delta-G solvation = -21009.073565 eV Core-core repulsion = 17761.571915 eV Total energy + Delta-G solvation = -3247.501651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66724 -39.64700 -37.80123 -34.27002 -33.82469 -32.45411 -32.12158 -30.44238 -27.77365 -27.11622 -25.18696 -24.63657 -22.85332 -21.84364 -20.85775 -19.81296 -19.04533 -17.74801 -17.42651 -16.13693 -15.92127 -15.74932 -14.88754 -14.75275 -14.56057 -14.32925 -13.97198 -13.45704 -13.37859 -13.16838 -12.96872 -12.79873 -12.58731 -12.42694 -12.16508 -12.12428 -11.96748 -11.07636 -10.97399 -10.83351 -10.40619 -10.13736 -9.86688 -9.75279 -9.66514 -9.55445 -8.96706 -8.89495 -8.62161 -7.26758 -5.78315 -3.13949 1.31811 2.01493 2.05867 3.34834 3.37704 3.40493 3.45588 3.47378 4.16237 4.29899 4.58259 4.63221 4.70358 4.82072 4.95066 4.98910 5.07904 5.15633 5.25820 5.28575 5.30969 5.45217 5.60989 5.72789 5.78905 5.81208 6.05489 6.15641 6.20603 6.23316 6.51498 6.57277 6.58109 6.64481 7.01928 7.30475 7.70647 7.97901 8.39878 8.41691 9.19144 9.91784 10.11523 11.39943 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036412 B = 0.003218 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.794437 B = 8699.846420 C = 9156.465121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 C -0.296 4.296 4 C 0.598 3.402 5 O -0.553 6.553 6 N -0.703 5.703 7 C 0.121 3.879 8 H 0.097 0.903 9 C -0.163 4.163 10 C 0.172 3.828 11 H 0.082 0.918 12 N -0.737 5.737 13 C -0.248 4.248 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.276 1.276 21 C -0.177 4.177 22 C 0.086 3.914 23 N -0.299 5.299 24 N -0.367 5.367 25 C 0.096 3.904 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.399 0.601 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.192 0.808 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 -21.834 9.574 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.023 3.977 3 C -0.310 4.310 4 C 0.386 3.614 5 O -0.432 6.432 6 N -0.353 5.353 7 C 0.015 3.985 8 H 0.115 0.885 9 C -0.203 4.203 10 C 0.060 3.940 11 H 0.100 0.900 12 N -0.377 5.377 13 C -0.378 4.378 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.202 1.202 21 C -0.219 4.219 22 C -0.102 4.102 23 N -0.118 5.118 24 N -0.147 5.147 25 C -0.045 4.045 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.234 0.766 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.208 0.792 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.731 -22.864 9.378 27.355 hybrid contribution -0.354 1.701 0.422 1.787 sum -12.084 -21.163 9.800 26.267 Atomic orbital electron populations 1.20687 0.86056 1.04792 1.04189 1.21529 0.94914 0.86272 0.94979 1.20030 0.92869 0.93637 1.24498 1.17137 0.85459 0.83526 0.75328 1.90710 1.16579 1.84284 1.51631 1.45432 1.09438 1.05440 1.74970 1.21741 0.98791 0.79227 0.98740 0.88473 1.23878 0.98120 0.98924 0.99365 1.21624 0.92913 0.88166 0.91273 0.89978 1.42755 1.46469 1.01502 1.46928 1.19135 1.12021 0.93920 1.12722 0.89153 1.24697 0.98636 0.97056 0.98748 1.69699 1.33250 1.20737 1.34381 0.86544 0.79257 0.83484 0.79222 1.21047 1.21740 1.20228 1.24275 1.01583 0.99788 0.96240 1.24084 0.97357 0.91972 0.96801 1.77193 0.95907 1.13360 1.25369 1.48367 1.04158 1.06335 1.55800 1.21946 1.01338 0.77429 1.03746 0.89510 0.91254 0.87373 0.76617 0.91376 0.89288 0.80410 0.93026 0.89748 0.91946 0.79172 0.90344 0.89170 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.34 36.01 0.34 -0.48 16 2 C 0.16 1.67 7.01 -81.60 -0.57 1.09 16 3 C -0.30 -3.63 6.13 -105.07 -0.64 -4.27 16 4 C 0.60 8.40 7.81 -12.52 -0.10 8.30 16 5 O -0.55 -9.17 14.44 5.27 0.08 -9.09 16 6 N -0.70 -9.11 5.25 -54.09 -0.28 -9.39 16 7 C 0.12 1.75 4.32 -67.12 -0.29 1.46 16 8 H 0.10 1.47 7.47 -51.93 -0.39 1.08 16 9 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 10 C 0.17 3.15 4.36 -67.12 -0.29 2.85 16 11 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 12 N -0.74 -17.09 5.21 -52.63 -0.27 -17.36 16 13 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 17 Si 0.88 21.97 27.74 -169.99 -4.71 17.26 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 21 C -0.18 -3.00 7.68 -25.92 -0.20 -3.20 16 22 C 0.09 0.95 11.50 -16.98 -0.20 0.75 16 23 N -0.30 -3.53 12.50 30.86 0.39 -3.14 16 24 N -0.37 -3.61 3.98 -63.34 -0.25 -3.86 16 25 C 0.10 0.49 11.06 59.85 0.66 1.15 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.36 7.71 -51.93 -0.40 -0.04 16 28 H 0.11 1.10 6.50 -51.93 -0.34 0.76 16 29 H 0.40 4.32 7.66 -40.82 -0.31 4.01 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 32 H 0.36 8.26 5.78 -40.82 -0.24 8.03 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.19 1.55 7.50 -52.49 -0.39 1.15 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.26 7.64 -51.93 -0.40 -0.14 16 39 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -35.40 328.24 -6.52 -41.91 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.43 Total: 9.16 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.74 Total: -1.97 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.35 Total: -62.22 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.40 -6.52 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019991845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.859 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds