Wall clock time and date at job start Tue Mar 31 2020 00:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38042 * 126.29341 * 2 1 4 4 C 1.47425 * 126.41558 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99631 * 359.72461 * 4 3 2 6 6 N 1.34775 * 120.00379 * 179.71947 * 4 3 2 7 7 C 1.46493 * 120.00228 * 180.02562 * 6 4 3 8 8 H 1.09004 * 112.90930 * 23.74380 * 7 6 4 9 9 C 1.53783 * 113.61843 * 154.99836 * 7 6 4 10 10 C 1.53784 * 87.08338 * 89.11341 * 9 7 6 11 11 H 1.09002 * 113.61454 * 270.80589 * 10 9 7 12 12 N 1.46499 * 113.61491 * 139.98310 * 10 9 7 13 13 C 1.36939 * 119.99933 * 155.27848 * 12 10 9 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 10 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 10 16 16 N 1.31612 * 120.00054 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99751 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47517 * 89.99708 * 17 15 13 19 19 H 1.48502 * 109.46736 * 209.99481 * 17 15 13 20 20 H 1.48496 * 109.47375 * 329.99177 * 17 15 13 21 21 C 1.53780 * 113.61430 * 252.49415 * 7 6 4 22 22 C 1.41297 * 107.17227 * 179.75673 * 3 2 1 23 23 N 1.30445 * 108.01918 * 0.23421 * 22 3 2 24 24 N 1.34264 * 126.29217 * 180.16875 * 2 1 3 25 25 C 1.46500 * 125.75209 * 359.96201 * 24 2 1 26 26 H 1.09000 * 109.46621 * 90.00466 * 1 2 3 27 27 H 1.08992 * 109.47265 * 210.00639 * 1 2 3 28 28 H 1.08999 * 109.47078 * 330.00722 * 1 2 3 29 29 H 0.97001 * 119.99938 * 0.02562 * 6 4 3 30 30 H 1.09000 * 113.60825 * 334.56902 * 9 7 6 31 31 H 1.08999 * 113.69620 * 203.67612 * 9 7 6 32 32 H 0.97001 * 119.99790 * 334.99822 * 12 10 9 33 33 H 0.96998 * 120.00381 * 180.02562 * 16 15 13 34 34 H 1.08998 * 113.61772 * 156.33432 * 21 7 6 35 35 H 1.09001 * 113.61751 * 25.43490 * 21 7 6 36 36 H 1.07993 * 125.98828 * 180.23549 * 22 3 2 37 37 H 1.08999 * 109.47283 * 270.30808 * 25 24 2 38 38 H 1.09000 * 109.47110 * 30.30683 * 25 24 2 39 39 H 1.08995 * 109.47065 * 150.30864 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 -0.0040 6 7 2.8000 3.5106 0.0062 7 6 2.3645 4.9094 0.0073 8 1 1.3593 5.0405 0.4078 9 6 3.3983 5.8760 0.6089 10 6 3.9856 6.0043 -0.8066 11 1 4.7538 5.2638 -1.0294 12 7 4.3934 7.3685 -1.1513 13 6 5.3553 7.5756 -2.1038 14 1 5.8163 6.7330 -2.5977 15 6 5.7376 8.8683 -2.4345 16 7 6.6624 9.0673 -3.3496 17 14 4.9405 10.3256 -1.5798 18 1 5.7186 10.6724 -0.3635 19 1 4.9190 11.4892 -2.5022 20 1 3.5502 9.9737 -1.1945 21 6 2.5915 5.6262 -1.3342 22 6 3.6591 0.6498 0.0057 23 7 3.6340 -0.6544 0.0039 24 7 2.3017 -1.0822 -0.0032 25 6 1.8501 -2.4758 -0.0065 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 3.7462 3.2973 0.0095 30 1 4.0748 5.4037 1.3211 31 1 2.9643 6.8016 0.9871 32 1 3.9793 8.1252 -0.7077 33 1 6.9298 9.9706 -3.5805 34 1 1.9356 6.4831 -1.4878 35 1 2.6166 4.9524 -2.1906 36 1 4.5449 1.2675 0.0108 37 1 1.7334 -2.8224 1.0203 38 1 0.8938 -2.5466 -0.5248 39 1 2.5870 -3.0953 -0.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019991845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:19 Heat of formation + Delta-G solvation = 48.767078 kcal Electronic energy + Delta-G solvation = -21010.208717 eV Core-core repulsion = 17761.571915 eV Total energy + Delta-G solvation = -3248.636802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.47414 -40.84608 -39.07056 -35.82808 -34.79626 -33.86566 -32.92138 -32.29617 -28.59740 -27.71820 -26.52420 -26.29577 -24.08559 -23.28063 -21.77523 -20.73611 -20.48031 -19.36185 -18.63138 -17.17213 -16.83874 -16.72173 -16.44569 -16.11032 -15.58842 -15.48173 -15.23378 -14.73012 -14.24527 -14.16314 -14.02875 -13.99224 -13.59332 -13.47712 -13.38407 -13.28039 -13.05391 -12.86254 -12.51784 -12.07326 -11.87401 -11.83587 -11.72534 -11.20877 -10.87379 -10.84992 -10.39898 -10.04359 -9.57501 -9.24754 -8.00681 -5.33643 0.49425 1.13841 1.40522 1.41473 1.43803 1.50982 2.31020 2.46186 2.50745 3.29567 3.51034 3.60943 3.66489 3.76710 3.87018 3.99179 4.05914 4.28614 4.31970 4.38954 4.42970 4.50280 4.63961 4.68348 4.75188 4.92413 4.92794 4.99795 5.12005 5.17649 5.21721 5.30352 5.40664 5.73422 5.79804 5.90292 6.24639 6.49257 6.69179 7.10059 7.34630 7.87257 8.06029 9.20931 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036412 B = 0.003218 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.794437 B = 8699.846420 C = 9156.465121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.156 3.844 3 C -0.324 4.324 4 C 0.597 3.403 5 O -0.582 6.582 6 N -0.698 5.698 7 C 0.137 3.863 8 H 0.098 0.902 9 C -0.142 4.142 10 C 0.153 3.847 11 H 0.080 0.920 12 N -0.741 5.741 13 C -0.232 4.232 14 H 0.058 0.942 15 C -0.067 4.067 16 N -0.986 5.986 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.299 1.299 20 H -0.250 1.250 21 C -0.175 4.175 22 C 0.085 3.915 23 N -0.325 5.325 24 N -0.363 5.363 25 C 0.084 3.916 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.410 0.590 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.211 0.789 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 -23.021 11.444 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.022 3.978 3 C -0.339 4.339 4 C 0.387 3.613 5 O -0.464 6.464 6 N -0.348 5.348 7 C 0.031 3.969 8 H 0.116 0.884 9 C -0.181 4.181 10 C 0.044 3.956 11 H 0.098 0.902 12 N -0.382 5.382 13 C -0.363 4.363 14 H 0.076 0.924 15 C -0.258 4.258 16 N -0.636 5.636 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.226 1.226 20 H -0.175 1.175 21 C -0.217 4.217 22 C -0.102 4.102 23 N -0.145 5.145 24 N -0.143 5.143 25 C -0.055 4.055 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.246 0.754 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.365 -24.131 11.289 29.806 hybrid contribution 0.132 1.860 -0.199 1.875 sum -13.233 -22.271 11.090 28.180 Atomic orbital electron populations 1.20721 0.84383 1.05447 1.04785 1.21916 0.96000 0.86235 0.93675 1.20035 0.93878 0.93096 1.26916 1.17401 0.85066 0.84312 0.74547 1.90691 1.17746 1.84820 1.53135 1.45357 1.10032 1.04725 1.74673 1.21496 0.98924 0.79872 0.96643 0.88412 1.23713 0.97739 0.99457 0.97220 1.21969 0.93402 0.85871 0.94346 0.90247 1.42751 1.45686 1.03662 1.46141 1.19117 1.11842 0.92891 1.12497 0.92442 1.25539 0.99855 1.00343 1.00101 1.69887 1.35701 1.21175 1.36884 0.85393 0.79539 0.78935 0.77816 1.20249 1.22645 1.17465 1.24178 1.00347 0.99835 0.97311 1.24412 0.97704 0.92044 0.96060 1.77141 0.97388 1.13678 1.26263 1.48730 1.03384 1.07697 1.54444 1.22379 1.02666 0.75103 1.05400 0.88806 0.87903 0.89364 0.75366 0.89243 0.88338 0.79904 0.93422 0.90222 0.93056 0.77271 0.88628 0.86583 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.34 71.24 0.67 -0.71 16 2 C 0.16 3.09 7.01 42.14 0.30 3.39 16 3 C -0.32 -7.64 6.13 -20.15 -0.12 -7.77 16 4 C 0.60 16.27 7.81 86.66 0.68 16.95 16 5 O -0.58 -18.97 14.44 -4.05 -0.06 -19.02 16 6 N -0.70 -17.12 5.25 -443.31 -2.33 -19.45 16 7 C 0.14 3.72 4.32 45.52 0.20 3.92 16 8 H 0.10 2.76 7.47 -2.38 -0.02 2.74 16 9 C -0.14 -3.79 7.58 31.12 0.24 -3.56 16 10 C 0.15 5.44 4.36 45.52 0.20 5.64 16 11 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 12 N -0.74 -33.61 5.21 -320.44 -1.67 -35.28 16 13 C -0.23 -13.11 10.45 84.03 0.88 -12.24 16 14 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 15 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 16 N -0.99 -63.44 13.97 21.65 0.30 -63.14 16 17 Si 0.96 45.26 27.74 68.60 1.90 47.17 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 21 C -0.17 -5.77 7.68 31.12 0.24 -5.53 16 22 C 0.09 1.79 11.50 85.65 0.99 2.78 16 23 N -0.33 -7.26 12.50 -56.28 -0.70 -7.96 16 24 N -0.36 -6.45 3.98 -354.31 -1.41 -7.86 16 25 C 0.08 0.62 11.06 127.77 1.41 2.03 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 0.75 7.71 -2.39 -0.02 0.73 16 28 H 0.09 1.70 6.50 -2.39 -0.02 1.68 16 29 H 0.41 8.26 7.66 -92.71 -0.71 7.55 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.10 2.53 8.12 -2.39 -0.02 2.51 16 32 H 0.37 15.90 5.78 -92.71 -0.54 15.36 16 33 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.21 3.16 7.50 -2.91 -0.02 3.14 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.12 0.26 7.64 -2.39 -0.02 0.24 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -77.79 328.24 1.94 -75.85 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.23 Total: 28.29 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.13 Total: 1.42 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -5.81 Total: -133.70 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.02 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal Total: -77.79 1.94 -75.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019991845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.615 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds