Wall clock time and date at job start Tue Mar 31 2020 00:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.47198 * 2 1 4 4 C 1.35358 * 126.38470 * 85.00270 * 3 2 1 5 5 C 1.41501 * 105.50372 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.51799 * 179.97438 * 5 4 3 7 7 O 1.21566 * 120.00036 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99798 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00005 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.85066 * 336.18870 * 9 8 6 11 11 C 1.53779 * 113.69504 * 107.46059 * 9 8 6 12 12 C 1.53788 * 87.08079 * 139.99166 * 11 9 8 13 13 H 1.09000 * 113.68920 * 220.01169 * 12 11 9 14 14 N 1.46496 * 113.61090 * 89.11615 * 12 11 9 15 15 C 1.36945 * 119.99718 * 107.50380 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.53780 * 87.08077 * 334.56830 * 12 11 9 24 24 N 1.31810 * 106.96039 * 0.24622 * 5 4 3 25 25 N 1.28465 * 110.07351 * 359.58760 * 24 5 4 26 26 H 0.97000 * 124.88412 * 180.20874 * 25 24 5 27 27 H 1.08997 * 109.47209 * 59.99339 * 1 2 3 28 28 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46782 * 299.99645 * 1 2 3 30 30 H 1.09000 * 109.46782 * 240.00355 * 2 1 3 31 31 H 1.09002 * 109.47514 * 119.99983 * 2 1 3 32 32 H 1.08000 * 127.24778 * 359.95626 * 4 3 2 33 33 H 0.97003 * 120.00660 * 359.97438 * 8 6 5 34 34 H 1.09004 * 113.60736 * 25.44831 * 11 9 8 35 35 H 1.08996 * 113.61543 * 254.54000 * 11 9 8 36 36 H 0.96996 * 120.00499 * 287.50110 * 14 12 11 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09003 * 113.61267 * 139.98048 * 23 12 11 39 39 H 1.09000 * 113.61965 * 270.88165 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2106 2.2095 1.0856 5 6 2.6933 3.4412 0.5832 6 6 3.0424 4.6376 1.3760 7 8 2.9240 4.6209 2.5857 8 7 3.4924 5.7476 0.7581 9 6 3.8392 6.9341 1.5444 10 1 3.3299 6.9673 2.5076 11 6 5.3522 7.1925 1.6384 12 6 5.0275 8.6869 1.4753 13 1 5.7295 9.2202 0.8344 14 7 4.7796 9.3754 2.7444 15 6 5.7086 10.2501 3.2416 16 1 6.6240 10.4320 2.6982 17 6 5.4736 10.9029 4.4438 18 7 4.3581 10.6808 5.1062 19 14 6.7411 12.0956 5.1223 20 1 6.2545 12.6563 6.4084 21 1 8.0231 11.3807 5.3469 22 1 6.9529 13.1985 4.1507 23 6 3.7435 8.2482 0.7514 24 7 2.7664 3.3197 -0.7273 25 7 2.3892 2.1443 -1.0829 26 1 2.3614 1.8238 -1.9980 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0234 1.9529 2.1178 33 1 3.5873 5.7608 -0.2072 34 1 5.9189 6.7755 0.8058 35 1 5.7785 6.9419 2.6097 36 1 3.9576 9.2117 3.2325 37 1 4.1940 11.1367 5.9465 38 1 2.8711 8.8498 1.0068 39 1 3.8704 8.1198 -0.3235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019995901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:15 Heat of formation + Delta-G solvation = 61.356316 kcal Electronic energy + Delta-G solvation = -20660.833083 eV Core-core repulsion = 17412.742191 eV Total energy + Delta-G solvation = -3248.090892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.88462 -39.54323 -37.78146 -34.71463 -33.92842 -32.65597 -31.85713 -29.79630 -29.42403 -25.18850 -25.02726 -24.15888 -23.64123 -22.17487 -21.29448 -20.00203 -18.63067 -17.92340 -17.28269 -16.79817 -15.97210 -15.81954 -14.86641 -14.79902 -14.42634 -14.30623 -13.95151 -13.84635 -13.57991 -13.05170 -12.84141 -12.62654 -12.06899 -12.01650 -11.90050 -11.63777 -11.57672 -11.01763 -10.82310 -10.75837 -10.21534 -10.11836 -9.99238 -9.66807 -9.60388 -9.56389 -9.19999 -8.85917 -8.59378 -6.95330 -5.74215 -3.04153 1.47548 1.92576 2.59845 3.40057 3.47138 3.51203 3.52385 3.52611 4.22480 4.32316 4.53428 4.60638 4.79514 5.03354 5.11223 5.17687 5.31565 5.33452 5.43582 5.46454 5.47996 5.53975 5.70556 5.76318 5.94199 6.05183 6.17768 6.19860 6.29933 6.45244 6.67835 6.74603 6.80113 6.86188 7.11055 7.55925 7.73394 7.86070 8.43237 8.44321 9.54645 10.11511 10.45662 11.47958 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046899 B = 0.002797 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.888211 B =10007.586313 C =10312.415993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.013 3.987 4 C -0.175 4.175 5 C -0.004 4.004 6 C 0.597 3.403 7 O -0.529 6.529 8 N -0.703 5.703 9 C 0.124 3.876 10 H 0.115 0.885 11 C -0.183 4.183 12 C 0.172 3.828 13 H 0.068 0.932 14 N -0.705 5.705 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.291 1.291 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.164 4.164 24 N -0.261 5.261 25 N -0.382 5.382 26 H 0.443 0.557 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 -21.756 -15.668 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.203 4.203 5 C -0.165 4.165 6 C 0.380 3.620 7 O -0.404 6.404 8 N -0.353 5.353 9 C 0.020 3.980 10 H 0.133 0.867 11 C -0.226 4.226 12 C 0.059 3.941 13 H 0.086 0.914 14 N -0.344 5.344 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.204 4.204 24 N -0.097 5.097 25 N -0.096 5.096 26 H 0.287 0.713 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.183 -20.971 -15.603 26.860 hybrid contribution 0.209 -0.126 0.256 0.354 sum -5.975 -21.097 -15.347 26.764 Atomic orbital electron populations 1.21790 0.93978 1.02271 1.02757 1.20117 0.96470 0.88664 1.03986 1.21437 1.05581 0.96911 0.87368 1.21543 1.06524 0.92376 0.99878 1.22112 1.07543 0.97109 0.89747 1.16954 0.77200 0.81376 0.86457 1.90826 1.53788 1.82624 1.13118 1.45984 1.65483 1.12960 1.10861 1.22707 0.97041 0.82090 0.96126 0.86696 1.24320 0.94904 1.01452 1.01901 1.20910 0.93877 0.90403 0.88949 0.91356 1.42196 1.22500 1.49248 1.20451 1.19228 0.98763 1.16553 1.03030 0.90988 1.24783 0.97589 1.00691 0.97756 1.69662 1.24971 1.46252 1.16932 0.86235 0.80697 0.80903 0.78133 1.21691 1.21207 1.21232 1.23899 1.01459 0.95938 0.99065 1.73539 1.18470 1.02480 1.15206 1.43281 1.47953 1.08603 1.09782 0.71326 0.92714 0.91722 0.91747 0.90695 0.88967 0.82019 0.76377 0.91235 0.90951 0.77943 0.93337 0.90804 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.90 37.16 0.37 -0.33 16 2 C -0.05 -0.26 6.49 -27.88 -0.18 -0.44 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.06 10.73 -39.37 -0.42 -2.48 16 5 C 0.00 -0.05 7.13 -82.77 -0.59 -0.64 16 6 C 0.60 10.05 7.82 -12.39 -0.10 9.95 16 7 O -0.53 -10.89 16.52 5.31 0.09 -10.80 16 8 N -0.70 -10.78 5.35 -54.00 -0.29 -11.06 16 9 C 0.12 2.20 4.11 -67.12 -0.28 1.92 16 10 H 0.12 2.39 7.46 -51.93 -0.39 2.00 16 11 C -0.18 -3.39 7.68 -25.92 -0.20 -3.59 16 12 C 0.17 3.46 4.56 -67.12 -0.31 3.16 16 13 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 14 N -0.71 -18.04 5.31 -52.64 -0.28 -18.32 16 15 C -0.24 -6.88 9.97 -15.06 -0.15 -7.03 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 19 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.16 -2.73 7.58 -25.92 -0.20 -2.93 16 24 N -0.26 -3.04 11.92 33.42 0.40 -2.64 16 25 N -0.38 -3.11 6.83 33.50 0.23 -2.88 16 26 H 0.44 1.88 8.96 -190.44 -1.71 0.18 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.40 5.18 8.45 -40.82 -0.35 4.83 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.39 10.55 7.90 -40.82 -0.32 10.23 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -34.44 336.16 -8.72 -43.17 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.96 Total: 11.02 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.68 Total: -3.28 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: 0.78 Total: -62.81 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.44 -8.72 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019995901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.522 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds