Wall clock time and date at job start Tue Mar 31 2020 00:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.47198 * 2 1 4 4 C 1.35358 * 126.38470 * 85.00270 * 3 2 1 5 5 C 1.41501 * 105.50372 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.51799 * 179.97438 * 5 4 3 7 7 O 1.21566 * 120.00036 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99798 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00005 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.85066 * 336.18870 * 9 8 6 11 11 C 1.53779 * 113.69504 * 107.46059 * 9 8 6 12 12 C 1.53788 * 87.08079 * 139.99166 * 11 9 8 13 13 H 1.09000 * 113.68920 * 220.01169 * 12 11 9 14 14 N 1.46496 * 113.61090 * 89.11615 * 12 11 9 15 15 C 1.36945 * 119.99718 * 107.50380 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.53780 * 87.08077 * 334.56830 * 12 11 9 24 24 N 1.31810 * 106.96039 * 0.24622 * 5 4 3 25 25 N 1.28465 * 110.07351 * 359.58760 * 24 5 4 26 26 H 0.97000 * 124.88412 * 180.20874 * 25 24 5 27 27 H 1.08997 * 109.47209 * 59.99339 * 1 2 3 28 28 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46782 * 299.99645 * 1 2 3 30 30 H 1.09000 * 109.46782 * 240.00355 * 2 1 3 31 31 H 1.09002 * 109.47514 * 119.99983 * 2 1 3 32 32 H 1.08000 * 127.24778 * 359.95626 * 4 3 2 33 33 H 0.97003 * 120.00660 * 359.97438 * 8 6 5 34 34 H 1.09004 * 113.60736 * 25.44831 * 11 9 8 35 35 H 1.08996 * 113.61543 * 254.54000 * 11 9 8 36 36 H 0.96996 * 120.00499 * 287.50110 * 14 12 11 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09003 * 113.61267 * 139.98048 * 23 12 11 39 39 H 1.09000 * 113.61965 * 270.88165 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2106 2.2095 1.0856 5 6 2.6933 3.4412 0.5832 6 6 3.0424 4.6376 1.3760 7 8 2.9240 4.6209 2.5857 8 7 3.4924 5.7476 0.7581 9 6 3.8392 6.9341 1.5444 10 1 3.3299 6.9673 2.5076 11 6 5.3522 7.1925 1.6384 12 6 5.0275 8.6869 1.4753 13 1 5.7295 9.2202 0.8344 14 7 4.7796 9.3754 2.7444 15 6 5.7086 10.2501 3.2416 16 1 6.6240 10.4320 2.6982 17 6 5.4736 10.9029 4.4438 18 7 4.3581 10.6808 5.1062 19 14 6.7411 12.0956 5.1223 20 1 6.2545 12.6563 6.4084 21 1 8.0231 11.3807 5.3469 22 1 6.9529 13.1985 4.1507 23 6 3.7435 8.2482 0.7514 24 7 2.7664 3.3197 -0.7273 25 7 2.3892 2.1443 -1.0829 26 1 2.3614 1.8238 -1.9980 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0234 1.9529 2.1178 33 1 3.5873 5.7608 -0.2072 34 1 5.9189 6.7755 0.8058 35 1 5.7785 6.9419 2.6097 36 1 3.9576 9.2117 3.2325 37 1 4.1940 11.1367 5.9465 38 1 2.8711 8.8498 1.0068 39 1 3.8704 8.1198 -0.3235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019995901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:13 Heat of formation + Delta-G solvation = 35.289840 kcal Electronic energy + Delta-G solvation = -20661.963410 eV Core-core repulsion = 17412.742191 eV Total energy + Delta-G solvation = -3249.221219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.72336 -40.96620 -39.29191 -35.75919 -35.23225 -34.26795 -32.86200 -31.61840 -30.25963 -26.70929 -26.51075 -25.45353 -24.65064 -23.62704 -22.06387 -21.26350 -20.14415 -19.34050 -18.66009 -17.93262 -17.31823 -16.87524 -16.64527 -15.87987 -15.60235 -15.50315 -15.27445 -15.02332 -14.75267 -14.35246 -14.23754 -13.63979 -13.38729 -13.30099 -13.27286 -12.75611 -12.63463 -12.50898 -12.21083 -12.10695 -11.83045 -11.75997 -11.72606 -11.39572 -11.14060 -10.85862 -10.50366 -9.99619 -9.96156 -9.02670 -7.94342 -5.24526 0.46758 1.08487 1.47831 1.51863 1.57779 1.85050 2.25571 2.31212 2.56481 3.34085 3.36981 3.63857 3.67824 3.83034 3.89826 4.00166 4.28029 4.29667 4.38527 4.42385 4.52108 4.68849 4.79582 4.81304 4.82629 4.99813 5.08548 5.14644 5.20494 5.23567 5.27771 5.29987 5.40762 5.51010 5.65605 6.08795 6.27712 6.48418 6.85773 7.17579 7.32260 8.08144 8.30040 9.29057 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046899 B = 0.002797 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.888211 B =10007.586313 C =10312.415993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.039 3.961 4 C -0.205 4.205 5 C -0.034 4.034 6 C 0.593 3.407 7 O -0.579 6.579 8 N -0.688 5.688 9 C 0.128 3.872 10 H 0.075 0.925 11 C -0.170 4.170 12 C 0.154 3.846 13 H 0.081 0.919 14 N -0.723 5.723 15 C -0.245 4.245 16 H 0.083 0.917 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.978 3.022 20 H -0.298 1.298 21 H -0.278 1.278 22 H -0.273 1.273 23 C -0.138 4.138 24 N -0.262 5.262 25 N -0.360 5.360 26 H 0.463 0.537 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.417 0.583 34 H 0.103 0.897 35 H 0.037 0.963 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 -23.393 -18.846 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.088 4.088 4 C -0.233 4.233 5 C -0.193 4.193 6 C 0.379 3.621 7 O -0.457 6.457 8 N -0.339 5.339 9 C 0.023 3.977 10 H 0.093 0.907 11 C -0.212 4.212 12 C 0.043 3.957 13 H 0.099 0.901 14 N -0.360 5.360 15 C -0.376 4.376 16 H 0.101 0.899 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.807 3.193 20 H -0.224 1.224 21 H -0.205 1.205 22 H -0.199 1.199 23 C -0.177 4.177 24 N -0.099 5.099 25 N -0.077 5.077 26 H 0.311 0.689 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.174 0.826 33 H 0.255 0.745 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.204 0.796 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.604 -22.631 -18.897 30.011 hybrid contribution 0.012 0.228 1.107 1.131 sum -5.593 -22.403 -17.789 29.148 Atomic orbital electron populations 1.21788 0.93697 1.03252 1.02013 1.20300 0.96499 0.86262 1.05896 1.21837 1.03031 0.97851 0.86076 1.21686 1.08102 0.92586 1.00891 1.21705 1.10257 0.96700 0.90660 1.17402 0.76277 0.82313 0.86156 1.90792 1.55921 1.83616 1.15404 1.45757 1.64896 1.11878 1.11341 1.22340 0.96218 0.83833 0.95315 0.90652 1.24187 0.95538 1.00132 1.01364 1.21214 0.96312 0.90750 0.87421 0.90111 1.42396 1.21623 1.49705 1.22318 1.19691 0.99184 1.15866 1.02887 0.89938 1.25665 0.99735 1.03212 0.98545 1.69842 1.27196 1.47943 1.17280 0.85143 0.78228 0.78859 0.77109 1.22405 1.20452 1.19892 1.23745 0.98998 0.94024 1.00955 1.73446 1.18623 1.03967 1.13872 1.43389 1.45908 1.07494 1.10923 0.68866 0.92585 0.89916 0.93417 0.87645 0.88222 0.82644 0.74506 0.87846 0.94360 0.79641 0.94027 0.91774 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 71.98 0.71 -0.28 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.13 16 3 C 0.04 0.56 6.48 41.40 0.27 0.83 16 4 C -0.20 -4.75 10.73 22.41 0.24 -4.51 16 5 C -0.03 -0.93 7.13 42.46 0.30 -0.63 16 6 C 0.59 20.49 7.82 86.75 0.68 21.17 16 7 O -0.58 -25.32 16.52 -3.92 -0.06 -25.38 16 8 N -0.69 -20.78 5.35 -443.03 -2.37 -23.16 16 9 C 0.13 4.57 4.11 45.52 0.19 4.76 16 10 H 0.08 3.35 7.46 -2.39 -0.02 3.33 16 11 C -0.17 -6.24 7.68 31.12 0.24 -6.00 16 12 C 0.15 6.10 4.56 45.52 0.21 6.31 16 13 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 14 N -0.72 -37.81 5.31 -320.45 -1.70 -39.51 16 15 C -0.24 -13.90 9.97 84.03 0.84 -13.06 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 18 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 19 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.14 -4.40 7.58 31.12 0.24 -4.16 16 24 N -0.26 -5.58 11.92 -48.18 -0.57 -6.15 16 25 N -0.36 -4.80 6.83 -47.93 -0.33 -5.13 16 26 H 0.46 2.12 8.96 -219.99 -1.97 0.15 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.42 9.90 8.45 -92.71 -0.78 9.12 16 34 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.37 21.27 7.90 -92.71 -0.73 20.54 16 37 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.12 2.88 8.12 -2.39 -0.02 2.86 16 Total: -1.00 -78.57 336.16 -0.56 -79.12 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -2.40 Total: 32.47 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 4.57 Total: 0.07 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -4.69 Total: -135.53 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.57 -0.56 -79.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019995901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.411 kcal (2) G-P(sol) polarization free energy of solvation -78.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds