Wall clock time and date at job start Tue Mar 31 2020 00:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39671 * 126.07187 * 2 1 4 4 C 1.38405 * 105.35879 * 180.10283 * 3 2 1 5 5 C 1.47166 * 126.88560 * 179.91109 * 4 3 2 6 6 O 1.21629 * 120.00251 * 184.55572 * 5 4 3 7 7 N 1.34776 * 119.99747 * 4.56132 * 5 4 3 8 8 C 1.46497 * 120.00058 * 174.27379 * 7 5 4 9 9 H 1.09000 * 112.85058 * 23.80494 * 8 7 5 10 10 C 1.53781 * 113.61513 * 154.99616 * 8 7 5 11 11 C 1.53786 * 87.08054 * 89.11792 * 10 8 7 12 12 H 1.08999 * 113.61262 * 270.79984 * 11 10 8 13 13 N 1.46495 * 113.61048 * 139.98123 * 11 10 8 14 14 C 1.36938 * 119.99543 * 156.53295 * 13 11 10 15 15 H 1.07996 * 120.00133 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99888 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99760 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00004 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47278 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46898 * 300.00085 * 18 16 14 21 21 H 1.48500 * 109.47251 * 60.00294 * 18 16 14 22 22 C 1.53777 * 87.16800 * 25.39320 * 11 10 8 23 23 N 1.36600 * 106.23335 * 359.65251 * 4 3 2 24 24 C 1.46499 * 125.19084 * 180.20139 * 23 4 3 25 25 N 1.28446 * 109.61833 * 0.22588 * 23 4 3 26 26 H 1.09005 * 109.47494 * 270.26839 * 1 2 3 27 27 H 1.09006 * 109.46890 * 30.26557 * 1 2 3 28 28 H 1.08995 * 109.47426 * 150.26674 * 1 2 3 29 29 H 1.07995 * 127.31928 * 0.02562 * 3 2 1 30 30 H 0.97004 * 120.00245 * 354.27700 * 7 5 4 31 31 H 1.09003 * 113.61662 * 334.57519 * 10 8 7 32 32 H 1.09003 * 113.69574 * 203.68261 * 10 8 7 33 33 H 0.97002 * 120.00781 * 336.53144 * 13 11 10 34 34 H 0.96999 * 120.00342 * 359.97438 * 17 16 14 35 35 H 1.09000 * 113.62169 * 89.16142 * 22 11 10 36 36 H 1.09013 * 113.61275 * 220.05864 * 22 11 10 37 37 H 1.09001 * 109.47047 * 84.28589 * 24 23 4 38 38 H 1.09004 * 109.47156 * 204.27870 * 24 23 4 39 39 H 1.08997 * 109.47233 * 324.28014 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6239 0.6394 -0.0024 5 6 4.8665 1.4280 -0.0052 6 8 5.9424 0.8673 -0.0908 7 7 4.8121 2.7715 0.0872 8 6 6.0483 3.5478 0.2109 9 1 6.9184 3.0242 -0.1851 10 6 5.9194 4.9956 -0.2914 11 6 5.4800 5.3680 1.1345 12 1 4.4047 5.2894 1.2946 13 7 6.0339 6.6396 1.6058 14 6 5.3990 7.3367 2.5989 15 1 4.4903 6.9488 3.0349 16 6 5.9241 8.5415 3.0460 17 7 7.0319 9.0139 2.5150 18 14 5.0586 9.4921 4.4012 19 1 5.8149 10.7360 4.6941 20 1 3.6840 9.8412 3.9606 21 1 4.9882 8.6550 5.6258 22 6 6.2662 4.1373 1.6162 23 7 3.5173 -0.7224 0.0043 24 6 4.6449 -1.6576 0.0087 25 7 2.2774 -1.0579 0.0055 26 1 -0.3634 0.0048 1.0277 27 1 -0.3633 0.8876 -0.5180 28 1 -0.3634 -0.8923 -0.5096 29 1 2.0207 2.1638 0.0004 30 1 3.9545 3.2244 0.0719 31 1 5.1372 5.1306 -1.0385 32 1 6.8685 5.4429 -0.5868 33 1 6.8503 6.9879 1.2146 34 1 7.4816 8.5202 1.8116 35 1 7.3111 4.3483 1.8441 36 1 5.7637 3.5802 2.4071 37 1 4.9900 -1.8057 1.0320 38 1 4.3265 -2.6127 -0.4091 39 1 5.4571 -1.2503 -0.5933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020010410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:24 Heat of formation + Delta-G solvation = 73.517109 kcal Electronic energy + Delta-G solvation = -21065.184559 eV Core-core repulsion = 17817.620999 eV Total energy + Delta-G solvation = -3247.563560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.74156 -39.93254 -38.02372 -34.60947 -34.09726 -33.00573 -30.99904 -29.89742 -29.52948 -25.77333 -25.28275 -24.71211 -23.46413 -22.33651 -21.28162 -19.79197 -19.00866 -17.94569 -17.34339 -16.55611 -16.45589 -15.63391 -15.23737 -14.79701 -14.49992 -14.00710 -13.97641 -13.71913 -13.56768 -13.42356 -13.15467 -12.69090 -12.54653 -12.49028 -12.31673 -12.03984 -11.61227 -10.90436 -10.86229 -10.61794 -10.38375 -10.24591 -10.09050 -9.96248 -9.38431 -9.19959 -9.07293 -8.98610 -8.87530 -7.09961 -6.16105 -3.16712 1.06983 2.16365 2.32723 3.02490 3.10962 3.49037 3.52239 3.69877 4.22408 4.37229 4.63680 4.76940 4.88423 4.93069 4.98970 5.05183 5.14525 5.29797 5.30130 5.36418 5.41374 5.43573 5.59487 5.72164 5.75420 5.76537 5.93106 6.09025 6.15975 6.26674 6.35172 6.48353 6.51879 6.52228 6.91669 7.35228 7.75121 7.84474 8.01659 8.69675 9.15602 10.02020 10.16459 11.31985 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.003426 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.434137 B = 8170.701689 C = 8947.843984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.022 3.978 3 C -0.186 4.186 4 C -0.033 4.033 5 C 0.593 3.407 6 O -0.544 6.544 7 N -0.689 5.689 8 C 0.117 3.883 9 H 0.100 0.900 10 C -0.160 4.160 11 C 0.172 3.828 12 H 0.075 0.925 13 N -0.724 5.724 14 C -0.338 4.338 15 H 0.065 0.935 16 C -0.043 4.043 17 N -0.942 5.942 18 Si 1.080 2.920 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.295 1.295 22 C -0.176 4.176 23 N -0.258 5.258 24 C 0.087 3.913 25 N -0.279 5.279 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.404 0.596 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.369 0.631 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -18.689 -7.231 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 C -0.215 4.215 4 C -0.162 4.162 5 C 0.378 3.622 6 O -0.422 6.422 7 N -0.339 5.339 8 C 0.012 3.988 9 H 0.118 0.882 10 C -0.199 4.199 11 C 0.060 3.940 12 H 0.093 0.907 13 N -0.363 5.363 14 C -0.469 4.469 15 H 0.083 0.917 16 C -0.241 4.241 17 N -0.587 5.587 18 Si 0.910 3.090 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.222 1.222 22 C -0.218 4.218 23 N -0.045 5.045 24 C -0.053 4.053 25 N -0.114 5.114 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.179 0.821 30 H 0.240 0.760 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.696 -18.985 -6.207 21.784 hybrid contribution -0.128 -0.344 -0.975 1.042 sum -8.824 -19.329 -7.182 22.429 Atomic orbital electron populations 1.20092 0.86323 1.03200 1.02874 1.22015 0.97168 0.88758 1.05501 1.22156 0.90277 1.00439 1.08656 1.21420 0.95756 0.85362 1.13668 1.16872 0.86461 0.82325 0.76513 1.90772 1.29905 1.70822 1.50713 1.45371 1.10460 1.05090 1.72993 1.21909 0.86487 0.91330 0.99065 0.88178 1.23858 1.02670 0.93737 0.99667 1.21568 0.96124 0.85741 0.90607 0.90692 1.42403 1.29064 1.21042 1.43795 1.20088 1.08137 1.04625 1.14027 0.91657 1.25808 0.98607 0.95944 1.03741 1.70891 1.18379 1.41025 1.28375 0.83248 0.74624 0.76181 0.74922 1.20995 1.22184 1.22207 1.24353 1.02646 0.99838 0.94988 1.45526 1.05115 1.04333 1.49544 1.22330 0.85602 0.92386 1.04980 1.73132 0.89460 1.27911 1.20856 0.90753 0.90417 0.91064 0.82074 0.76042 0.91466 0.88984 0.79732 0.93346 0.89520 0.92203 0.89725 0.88807 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.00 0.38 -0.12 16 2 C 0.02 0.24 7.22 -82.47 -0.60 -0.35 16 3 C -0.19 -2.04 10.44 -38.99 -0.41 -2.45 16 4 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 5 C 0.59 8.24 7.79 -12.64 -0.10 8.15 16 6 O -0.54 -8.78 14.38 5.25 0.08 -8.70 16 7 N -0.69 -8.82 5.25 -54.09 -0.28 -9.10 16 8 C 0.12 1.70 4.37 -67.03 -0.29 1.41 16 9 H 0.10 1.50 7.41 -51.93 -0.38 1.12 16 10 C -0.16 -2.41 7.58 -25.92 -0.20 -2.61 16 11 C 0.17 3.22 4.34 -67.12 -0.29 2.93 16 12 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 13 N -0.72 -17.55 5.41 -52.64 -0.28 -17.83 16 14 C -0.34 -9.30 9.97 -15.06 -0.15 -9.45 16 15 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 16 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 17 N -0.94 -28.74 13.70 55.49 0.76 -27.98 16 18 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.18 -3.01 7.69 -25.83 -0.20 -3.21 16 23 N -0.26 -3.21 3.75 -63.88 -0.24 -3.45 16 24 C 0.09 0.82 10.71 59.85 0.64 1.46 16 25 N -0.28 -3.52 11.90 33.64 0.40 -3.12 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.16 1.33 7.58 -52.49 -0.40 0.93 16 30 H 0.40 4.35 7.73 -40.82 -0.32 4.04 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.37 9.21 6.74 -40.82 -0.28 8.94 16 34 H 0.26 7.63 6.77 -40.82 -0.28 7.36 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 1.09 6.55 -51.93 -0.34 0.75 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -33.89 330.60 -6.98 -40.87 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.42 Total: 10.51 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.88 Total: -6.57 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.35 Total: -61.48 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.89 -6.98 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020010410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.385 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds