Wall clock time and date at job start Tue Mar 31 2020 00:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39671 * 126.07187 * 2 1 4 4 C 1.38405 * 105.35879 * 180.10283 * 3 2 1 5 5 C 1.47166 * 126.88560 * 179.91109 * 4 3 2 6 6 O 1.21629 * 120.00251 * 184.55572 * 5 4 3 7 7 N 1.34776 * 119.99747 * 4.56132 * 5 4 3 8 8 C 1.46497 * 120.00058 * 174.27379 * 7 5 4 9 9 H 1.09000 * 112.85058 * 23.80494 * 8 7 5 10 10 C 1.53781 * 113.61513 * 154.99616 * 8 7 5 11 11 C 1.53786 * 87.08054 * 89.11792 * 10 8 7 12 12 H 1.08999 * 113.61262 * 270.79984 * 11 10 8 13 13 N 1.46495 * 113.61048 * 139.98123 * 11 10 8 14 14 C 1.36938 * 119.99543 * 156.53295 * 13 11 10 15 15 H 1.07996 * 120.00133 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99888 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99760 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00004 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47278 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46898 * 300.00085 * 18 16 14 21 21 H 1.48500 * 109.47251 * 60.00294 * 18 16 14 22 22 C 1.53777 * 87.16800 * 25.39320 * 11 10 8 23 23 N 1.36600 * 106.23335 * 359.65251 * 4 3 2 24 24 C 1.46499 * 125.19084 * 180.20139 * 23 4 3 25 25 N 1.28446 * 109.61833 * 0.22588 * 23 4 3 26 26 H 1.09005 * 109.47494 * 270.26839 * 1 2 3 27 27 H 1.09006 * 109.46890 * 30.26557 * 1 2 3 28 28 H 1.08995 * 109.47426 * 150.26674 * 1 2 3 29 29 H 1.07995 * 127.31928 * 0.02562 * 3 2 1 30 30 H 0.97004 * 120.00245 * 354.27700 * 7 5 4 31 31 H 1.09003 * 113.61662 * 334.57519 * 10 8 7 32 32 H 1.09003 * 113.69574 * 203.68261 * 10 8 7 33 33 H 0.97002 * 120.00781 * 336.53144 * 13 11 10 34 34 H 0.96999 * 120.00342 * 359.97438 * 17 16 14 35 35 H 1.09000 * 113.62169 * 89.16142 * 22 11 10 36 36 H 1.09013 * 113.61275 * 220.05864 * 22 11 10 37 37 H 1.09001 * 109.47047 * 84.28589 * 24 23 4 38 38 H 1.09004 * 109.47156 * 204.27870 * 24 23 4 39 39 H 1.08997 * 109.47233 * 324.28014 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6239 0.6394 -0.0024 5 6 4.8665 1.4280 -0.0052 6 8 5.9424 0.8673 -0.0908 7 7 4.8121 2.7715 0.0872 8 6 6.0483 3.5478 0.2109 9 1 6.9184 3.0242 -0.1851 10 6 5.9194 4.9956 -0.2914 11 6 5.4800 5.3680 1.1345 12 1 4.4047 5.2894 1.2946 13 7 6.0339 6.6396 1.6058 14 6 5.3990 7.3367 2.5989 15 1 4.4903 6.9488 3.0349 16 6 5.9241 8.5415 3.0460 17 7 7.0319 9.0139 2.5150 18 14 5.0586 9.4921 4.4012 19 1 5.8149 10.7360 4.6941 20 1 3.6840 9.8412 3.9606 21 1 4.9882 8.6550 5.6258 22 6 6.2662 4.1373 1.6162 23 7 3.5173 -0.7224 0.0043 24 6 4.6449 -1.6576 0.0087 25 7 2.2774 -1.0579 0.0055 26 1 -0.3634 0.0048 1.0277 27 1 -0.3633 0.8876 -0.5180 28 1 -0.3634 -0.8923 -0.5096 29 1 2.0207 2.1638 0.0004 30 1 3.9545 3.2244 0.0719 31 1 5.1372 5.1306 -1.0385 32 1 6.8685 5.4429 -0.5868 33 1 6.8503 6.9879 1.2146 34 1 7.4816 8.5202 1.8116 35 1 7.3111 4.3483 1.8441 36 1 5.7637 3.5802 2.4071 37 1 4.9900 -1.8057 1.0320 38 1 4.3265 -2.6127 -0.4091 39 1 5.4571 -1.2503 -0.5933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020010410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:23 Heat of formation + Delta-G solvation = 49.692137 kcal Electronic energy + Delta-G solvation = -21066.217688 eV Core-core repulsion = 17817.620999 eV Total energy + Delta-G solvation = -3248.596689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61055 -41.14405 -39.33254 -36.17679 -35.12764 -34.33591 -32.19113 -31.19771 -30.57146 -26.65558 -26.57016 -26.26278 -24.94887 -23.72247 -22.24877 -20.81863 -20.30771 -19.46048 -18.77168 -17.57361 -17.43368 -16.85785 -16.72533 -16.03908 -15.80271 -15.54446 -15.33439 -14.86162 -14.55381 -14.36184 -14.14213 -13.76152 -13.43183 -13.32739 -13.28137 -13.23392 -13.15005 -12.64296 -12.44166 -11.89790 -11.84740 -11.74508 -11.64132 -11.28076 -11.09707 -10.84330 -10.38669 -10.06003 -9.87063 -9.09456 -8.37750 -5.32146 0.11759 1.29711 1.49177 1.60339 1.69784 1.85924 2.01559 2.09451 2.73181 3.37938 3.40574 3.47657 3.58839 3.72459 3.80057 4.00969 4.18961 4.22184 4.23682 4.27908 4.36963 4.55289 4.61083 4.64525 4.81135 4.82138 4.89462 4.99752 5.03344 5.09489 5.11591 5.13755 5.51266 5.54880 5.63215 5.71310 6.31270 6.51193 6.92471 7.02237 7.10485 8.00945 8.12281 9.14161 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.003426 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.434137 B = 8170.701689 C = 8947.843984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.013 3.987 3 C -0.179 4.179 4 C -0.056 4.056 5 C 0.595 3.405 6 O -0.571 6.571 7 N -0.680 5.680 8 C 0.138 3.862 9 H 0.100 0.900 10 C -0.142 4.142 11 C 0.156 3.844 12 H 0.082 0.918 13 N -0.740 5.740 14 C -0.334 4.334 15 H 0.069 0.931 16 C -0.105 4.105 17 N -0.977 5.977 18 Si 1.126 2.874 19 H -0.296 1.296 20 H -0.275 1.275 21 H -0.280 1.280 22 C -0.172 4.172 23 N -0.268 5.268 24 C 0.083 3.917 25 N -0.297 5.297 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.188 0.812 30 H 0.416 0.584 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.361 0.639 34 H 0.245 0.755 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 -19.390 -7.498 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C -0.208 4.208 4 C -0.184 4.184 5 C 0.382 3.618 6 O -0.450 6.450 7 N -0.331 5.331 8 C 0.032 3.968 9 H 0.118 0.882 10 C -0.181 4.181 11 C 0.046 3.954 12 H 0.100 0.900 13 N -0.379 5.379 14 C -0.465 4.465 15 H 0.087 0.913 16 C -0.296 4.296 17 N -0.625 5.625 18 Si 0.951 3.049 19 H -0.222 1.222 20 H -0.200 1.200 21 H -0.206 1.206 22 C -0.214 4.214 23 N -0.055 5.055 24 C -0.056 4.056 25 N -0.132 5.132 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.205 0.795 30 H 0.254 0.746 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.194 0.806 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.818 -19.747 -6.499 23.435 hybrid contribution 0.470 -0.245 -0.918 1.060 sum -10.348 -19.993 -7.417 23.702 Atomic orbital electron populations 1.20233 0.83934 1.04390 1.03809 1.22658 0.98728 0.88372 1.04506 1.22553 0.89418 1.01758 1.07076 1.21405 0.95805 0.85776 1.15426 1.17037 0.86571 0.82447 0.75785 1.90760 1.31008 1.71339 1.51937 1.45221 1.10416 1.04798 1.72662 1.21587 0.87314 0.91191 0.96701 0.88231 1.23676 1.03206 0.93408 0.97807 1.21936 0.96471 0.83871 0.93137 0.90036 1.42606 1.28998 1.22685 1.43627 1.20453 1.07783 1.04426 1.13865 0.91255 1.27167 0.98899 0.97654 1.05889 1.70994 1.20062 1.41858 1.29614 0.82649 0.74408 0.74713 0.73150 1.22178 1.20046 1.20616 1.24197 1.01450 0.99228 0.96566 1.45792 1.05527 1.04572 1.49656 1.22450 0.84967 0.92868 1.05303 1.73132 0.89749 1.28864 1.21465 0.89851 0.88444 0.90696 0.79477 0.74621 0.89219 0.89104 0.80634 0.94472 0.90912 0.92598 0.89271 0.86789 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 71.23 0.74 -0.05 16 2 C 0.01 0.26 7.22 43.05 0.31 0.58 16 3 C -0.18 -3.49 10.44 22.66 0.24 -3.25 16 4 C -0.06 -1.34 6.96 40.79 0.28 -1.05 16 5 C 0.60 15.74 7.79 86.59 0.67 16.41 16 6 O -0.57 -18.03 14.38 -4.12 -0.06 -18.09 16 7 N -0.68 -15.99 5.25 -443.29 -2.33 -18.32 16 8 C 0.14 3.77 4.37 45.58 0.20 3.97 16 9 H 0.10 2.85 7.41 -2.39 -0.02 2.83 16 10 C -0.14 -4.01 7.58 31.12 0.24 -3.77 16 11 C 0.16 5.64 4.34 45.52 0.20 5.84 16 12 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 13 N -0.74 -35.77 5.41 -320.45 -1.73 -37.51 16 14 C -0.33 -18.23 9.97 84.04 0.84 -17.39 16 15 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 16 C -0.10 -5.99 5.50 84.86 0.47 -5.53 16 17 N -0.98 -60.54 13.70 21.65 0.30 -60.24 16 18 Si 1.13 51.00 29.92 68.60 2.05 53.05 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 C -0.17 -5.77 7.69 31.18 0.24 -5.53 16 23 N -0.27 -6.37 3.75 -356.02 -1.33 -7.71 16 24 C 0.08 1.53 10.71 127.77 1.37 2.90 16 25 N -0.30 -7.08 11.90 -47.50 -0.57 -7.64 16 26 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.19 2.43 7.58 -2.91 -0.02 2.41 16 30 H 0.42 7.78 7.73 -92.71 -0.72 7.06 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.66 8.11 -2.39 -0.02 2.64 16 33 H 0.36 18.32 6.74 -92.71 -0.62 17.70 16 34 H 0.24 15.04 6.77 -92.71 -0.63 14.41 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 2.00 6.55 -2.39 -0.02 1.99 16 Total: -1.00 -72.68 330.60 2.00 -70.68 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.12 Total: 32.66 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.79 Total: -6.88 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.66 Total: -131.42 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -72.68 2.00 -70.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020010410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.369 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds