Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30451 * 125.99153 * 2 1 4 4 N 1.39934 * 108.89526 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.74912 * 179.97438 * 4 3 2 6 6 C 1.34254 * 108.49442 * 0.26775 * 4 3 2 7 7 C 1.38039 * 107.41579 * 359.57939 * 6 4 3 8 8 C 1.47435 * 126.41163 * 180.16230 * 7 6 4 9 9 O 1.21612 * 119.99612 * 180.29829 * 8 7 6 10 10 N 1.34770 * 120.00145 * 0.30170 * 8 7 6 11 11 C 1.46505 * 119.99705 * 179.97438 * 10 8 7 12 12 H 1.08992 * 112.85434 * 334.67060 * 11 10 8 13 13 C 1.53781 * 113.61033 * 105.86543 * 11 10 8 14 14 C 1.54051 * 86.98562 * 89.16118 * 13 11 10 15 15 H 1.09006 * 113.61362 * 270.88225 * 14 13 11 16 16 N 1.46509 * 113.69612 * 139.99104 * 14 13 11 17 17 C 1.36937 * 120.00172 * 107.46484 * 16 14 13 18 18 H 1.07999 * 119.99776 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00072 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99867 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47285 * 119.99890 * 21 19 17 24 24 H 1.48500 * 109.46610 * 239.99778 * 21 19 17 25 25 C 1.53773 * 87.07909 * 25.42911 * 14 13 11 26 26 H 1.08990 * 109.47211 * 89.96974 * 1 2 3 27 27 H 1.08999 * 109.47227 * 209.97602 * 1 2 3 28 28 H 1.08998 * 109.46707 * 329.96987 * 1 2 3 29 29 H 1.09001 * 109.47060 * 90.03173 * 5 4 3 30 30 H 1.09004 * 109.47073 * 210.02662 * 5 4 3 31 31 H 1.09000 * 109.47212 * 330.02745 * 5 4 3 32 32 H 1.08006 * 126.28886 * 179.74242 * 6 4 3 33 33 H 0.96995 * 120.00494 * 0.02562 * 10 8 7 34 34 H 1.09002 * 113.61474 * 203.66407 * 13 11 10 35 35 H 1.09002 * 113.61663 * 334.56389 * 13 11 10 36 36 H 0.96999 * 119.99361 * 287.46479 * 16 14 13 37 37 H 0.97003 * 119.99807 * 180.02562 * 20 19 17 38 38 H 1.08998 * 113.61694 * 220.02452 * 25 14 13 39 39 H 1.09002 * 113.69148 * 89.13317 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6441 -0.0006 5 6 4.7788 1.5290 -0.0013 6 6 3.6439 -0.6980 -0.0069 7 6 2.3373 -1.1432 -0.0007 8 6 1.8916 -2.5486 -0.0009 9 8 0.7038 -2.8097 -0.0004 10 7 2.8004 -3.5438 -0.0015 11 6 2.3574 -4.9402 -0.0012 12 1 1.3644 -5.0692 0.4293 13 6 2.5373 -5.6438 -1.3567 14 6 3.9471 -6.0352 -0.8744 15 1 4.7113 -5.2956 -1.1134 16 7 4.3387 -7.3977 -1.2443 17 6 5.2745 -7.5993 -2.2234 18 1 5.7242 -6.7538 -2.7228 19 6 5.6451 -8.8901 -2.5742 20 7 5.0974 -9.9205 -1.9652 21 14 6.9223 -9.1650 -3.9094 22 1 7.3812 -7.8534 -4.4330 23 1 8.0788 -9.9047 -3.3435 24 1 6.3215 -9.9555 -5.0137 25 6 3.4035 -5.9182 0.5592 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5143 29 1 5.0692 1.7481 1.0262 30 1 5.6055 1.0392 -0.5159 31 1 4.5305 2.4578 -0.5147 32 1 4.5298 -1.3158 -0.0128 33 1 3.7477 -3.3355 -0.0015 34 1 1.8721 -6.4957 -1.4982 35 1 2.5388 -4.9610 -2.2063 36 1 3.9350 -8.1570 -0.7954 37 1 5.3567 -10.8225 -2.2100 38 1 4.1038 -5.4567 1.2554 39 1 2.9746 -6.8443 0.9420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020032066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = 71.413550 kcal Electronic energy + Delta-G solvation = -20963.512901 eV Core-core repulsion = 17715.858124 eV Total energy + Delta-G solvation = -3247.654778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -41.59954 -39.57356 -37.70374 -34.27338 -33.94198 -32.70393 -30.70278 -29.74239 -29.48140 -26.21992 -25.09844 -24.54797 -22.95505 -22.04381 -20.67293 -19.84580 -18.84909 -17.80104 -17.07232 -16.24815 -16.01093 -15.53633 -15.01716 -14.58162 -14.50620 -14.05564 -13.79762 -13.61993 -13.53104 -13.28748 -12.77819 -12.65600 -12.38005 -12.13815 -12.02511 -11.82883 -11.63005 -11.04893 -10.92655 -10.78035 -10.29284 -10.19918 -9.91447 -9.70431 -9.56917 -9.55377 -8.95216 -8.89801 -8.61901 -6.98687 -5.81212 -3.10082 1.30955 2.03944 2.09033 3.35884 3.40217 3.45692 3.48176 3.50138 4.09720 4.35368 4.56305 4.66475 4.73022 4.97436 4.99497 5.07005 5.23175 5.25702 5.29044 5.46165 5.52027 5.61794 5.77895 5.87865 5.88053 5.95387 6.18770 6.26564 6.35181 6.39614 6.51356 6.58092 6.67178 6.73393 7.11590 7.36655 7.66239 7.72834 8.37270 8.43315 9.48566 10.06420 10.40742 11.41218 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.003387 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.768395 B = 8265.804694 C = 9028.296278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.132 3.868 3 N -0.306 5.306 4 N -0.363 5.363 5 C 0.097 3.903 6 C 0.100 3.900 7 C -0.285 4.285 8 C 0.594 3.406 9 O -0.544 6.544 10 N -0.706 5.706 11 C 0.119 3.881 12 H 0.096 0.904 13 C -0.176 4.176 14 C 0.166 3.834 15 H 0.072 0.928 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.159 4.159 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.184 0.816 33 H 0.395 0.605 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.063 0.937 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 21.613 6.308 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.128 5.128 4 N -0.141 5.141 5 C -0.044 4.044 6 C -0.052 4.052 7 C -0.300 4.300 8 C 0.382 3.618 9 O -0.422 6.422 10 N -0.356 5.356 11 C 0.014 3.986 12 H 0.114 0.886 13 C -0.219 4.219 14 C 0.054 3.946 15 H 0.090 0.910 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.199 4.199 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.201 0.799 33 H 0.229 0.771 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.549 22.780 6.168 23.737 hybrid contribution 1.324 -1.240 -0.677 1.936 sum -1.225 21.539 5.491 22.262 Atomic orbital electron populations 1.20347 0.85618 1.03996 1.03607 1.22486 0.97297 0.88725 0.95004 1.77185 0.85950 1.22682 1.26963 1.48285 1.06162 1.04770 1.54894 1.21995 0.83803 0.94748 1.03862 1.23133 0.99082 0.85270 0.97691 1.20319 0.92051 0.94670 1.22988 1.17197 0.85679 0.83329 0.75600 1.90728 1.16312 1.84206 1.50961 1.45532 1.09127 1.05698 1.75206 1.21784 0.98762 0.79103 0.98998 0.88595 1.24342 1.02118 0.99692 0.95699 1.21672 0.92644 0.88946 0.91317 0.90985 1.42415 1.47894 1.01092 1.43659 1.19330 1.14560 0.92029 1.11621 0.91099 1.24768 1.00437 0.95557 1.00123 1.69669 1.46034 0.97743 1.44479 0.86126 0.81041 0.77636 0.81420 1.20567 1.21845 1.21812 1.23850 0.97819 0.98804 0.99412 0.90194 0.88474 0.91208 0.90231 0.88945 0.88924 0.79912 0.77078 0.89622 0.92417 0.77999 0.93467 0.91850 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.92 36.01 0.36 -0.50 16 2 C 0.13 1.70 7.26 -82.02 -0.60 1.10 16 3 N -0.31 -3.79 12.50 33.90 0.42 -3.37 16 4 N -0.36 -3.45 3.98 -67.59 -0.27 -3.72 16 5 C 0.10 0.46 11.44 59.85 0.68 1.14 16 6 C 0.10 0.93 10.99 -16.57 -0.18 0.75 16 7 C -0.29 -3.58 6.13 -105.06 -0.64 -4.22 16 8 C 0.59 8.62 7.81 -12.52 -0.10 8.52 16 9 O -0.54 -9.54 14.54 5.27 0.08 -9.46 16 10 N -0.71 -9.21 5.25 -54.09 -0.28 -9.50 16 11 C 0.12 1.80 4.30 -67.11 -0.29 1.51 16 12 H 0.10 1.53 7.50 -51.93 -0.39 1.14 16 13 C -0.18 -3.10 7.70 -25.78 -0.20 -3.30 16 14 C 0.17 3.14 4.37 -66.98 -0.29 2.84 16 15 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 16 N -0.71 -17.43 5.41 -52.50 -0.28 -17.71 16 17 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C -0.16 -2.47 7.57 -25.92 -0.20 -2.66 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.19 6.55 -51.93 -0.34 0.85 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.18 1.01 7.46 -52.48 -0.39 0.62 16 33 H 0.40 4.12 7.63 -40.82 -0.31 3.81 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.39 10.04 7.93 -40.82 -0.32 9.72 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.47 8.12 -51.93 -0.42 1.04 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -34.57 333.13 -6.84 -41.41 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.53 Total: 9.46 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.70 Total: -2.06 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.31 Total: -61.36 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.57 -6.84 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020032066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.820 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds