Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30451 * 125.99153 * 2 1 4 4 N 1.39934 * 108.89526 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.74912 * 179.97438 * 4 3 2 6 6 C 1.34254 * 108.49442 * 0.26775 * 4 3 2 7 7 C 1.38039 * 107.41579 * 359.57939 * 6 4 3 8 8 C 1.47435 * 126.41163 * 180.16230 * 7 6 4 9 9 O 1.21612 * 119.99612 * 180.29829 * 8 7 6 10 10 N 1.34770 * 120.00145 * 0.30170 * 8 7 6 11 11 C 1.46505 * 119.99705 * 179.97438 * 10 8 7 12 12 H 1.08992 * 112.85434 * 334.67060 * 11 10 8 13 13 C 1.53781 * 113.61033 * 105.86543 * 11 10 8 14 14 C 1.54051 * 86.98562 * 89.16118 * 13 11 10 15 15 H 1.09006 * 113.61362 * 270.88225 * 14 13 11 16 16 N 1.46509 * 113.69612 * 139.99104 * 14 13 11 17 17 C 1.36937 * 120.00172 * 107.46484 * 16 14 13 18 18 H 1.07999 * 119.99776 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00072 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99867 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47285 * 119.99890 * 21 19 17 24 24 H 1.48500 * 109.46610 * 239.99778 * 21 19 17 25 25 C 1.53773 * 87.07909 * 25.42911 * 14 13 11 26 26 H 1.08990 * 109.47211 * 89.96974 * 1 2 3 27 27 H 1.08999 * 109.47227 * 209.97602 * 1 2 3 28 28 H 1.08998 * 109.46707 * 329.96987 * 1 2 3 29 29 H 1.09001 * 109.47060 * 90.03173 * 5 4 3 30 30 H 1.09004 * 109.47073 * 210.02662 * 5 4 3 31 31 H 1.09000 * 109.47212 * 330.02745 * 5 4 3 32 32 H 1.08006 * 126.28886 * 179.74242 * 6 4 3 33 33 H 0.96995 * 120.00494 * 0.02562 * 10 8 7 34 34 H 1.09002 * 113.61474 * 203.66407 * 13 11 10 35 35 H 1.09002 * 113.61663 * 334.56389 * 13 11 10 36 36 H 0.96999 * 119.99361 * 287.46479 * 16 14 13 37 37 H 0.97003 * 119.99807 * 180.02562 * 20 19 17 38 38 H 1.08998 * 113.61694 * 220.02452 * 25 14 13 39 39 H 1.09002 * 113.69148 * 89.13317 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6441 -0.0006 5 6 4.7788 1.5290 -0.0013 6 6 3.6439 -0.6980 -0.0069 7 6 2.3373 -1.1432 -0.0007 8 6 1.8916 -2.5486 -0.0009 9 8 0.7038 -2.8097 -0.0004 10 7 2.8004 -3.5438 -0.0015 11 6 2.3574 -4.9402 -0.0012 12 1 1.3644 -5.0692 0.4293 13 6 2.5373 -5.6438 -1.3567 14 6 3.9471 -6.0352 -0.8744 15 1 4.7113 -5.2956 -1.1134 16 7 4.3387 -7.3977 -1.2443 17 6 5.2745 -7.5993 -2.2234 18 1 5.7242 -6.7538 -2.7228 19 6 5.6451 -8.8901 -2.5742 20 7 5.0974 -9.9205 -1.9652 21 14 6.9223 -9.1650 -3.9094 22 1 7.3812 -7.8534 -4.4330 23 1 8.0788 -9.9047 -3.3435 24 1 6.3215 -9.9555 -5.0137 25 6 3.4035 -5.9182 0.5592 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5143 29 1 5.0692 1.7481 1.0262 30 1 5.6055 1.0392 -0.5159 31 1 4.5305 2.4578 -0.5147 32 1 4.5298 -1.3158 -0.0128 33 1 3.7477 -3.3355 -0.0015 34 1 1.8721 -6.4957 -1.4982 35 1 2.5388 -4.9610 -2.2063 36 1 3.9350 -8.1570 -0.7954 37 1 5.3567 -10.8225 -2.2100 38 1 4.1038 -5.4567 1.2554 39 1 2.9746 -6.8443 0.9420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020032066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = 46.371557 kcal Electronic energy + Delta-G solvation = -20964.598804 eV Core-core repulsion = 17715.858124 eV Total energy + Delta-G solvation = -3248.740680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42255 -40.80286 -39.01214 -35.74814 -34.90420 -34.15036 -32.07428 -31.05993 -30.29477 -27.05244 -26.50294 -26.21843 -24.20493 -23.30142 -21.64460 -20.78123 -20.20428 -19.17430 -18.56751 -17.34047 -16.77146 -16.68013 -16.53097 -15.84680 -15.64541 -15.38510 -15.21457 -14.84089 -14.33115 -14.23287 -14.03411 -13.47910 -13.39714 -13.36359 -13.26447 -12.99761 -12.95137 -12.82516 -12.55339 -12.08539 -11.90421 -11.80351 -11.70286 -11.15634 -10.84647 -10.81933 -10.36802 -10.03548 -9.58796 -8.95682 -7.92591 -5.20789 0.53187 1.09704 1.47184 1.49428 1.50454 1.59926 2.26852 2.46219 2.58567 3.38773 3.39523 3.71526 3.77431 3.90975 4.01114 4.07873 4.23121 4.36955 4.37727 4.41838 4.44718 4.48537 4.72486 4.76017 4.80554 4.95803 4.96479 4.98394 5.03267 5.19068 5.26526 5.32285 5.52283 5.54252 5.77488 5.91176 6.29787 6.51718 6.72541 7.35867 7.36866 8.13244 8.35210 9.31048 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.003387 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.768395 B = 8265.804694 C = 9028.296278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.114 3.886 3 N -0.331 5.331 4 N -0.359 5.359 5 C 0.085 3.915 6 C 0.123 3.877 7 C -0.319 4.319 8 C 0.595 3.405 9 O -0.583 6.583 10 N -0.694 5.694 11 C 0.138 3.862 12 H 0.088 0.912 13 C -0.174 4.174 14 C 0.154 3.846 15 H 0.086 0.914 16 N -0.728 5.728 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.298 1.298 25 C -0.141 4.141 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.226 0.774 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.374 0.626 37 H 0.250 0.750 38 H 0.089 0.911 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 23.643 6.450 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 N -0.154 5.154 4 N -0.136 5.136 5 C -0.053 4.053 6 C -0.030 4.030 7 C -0.334 4.334 8 C 0.384 3.616 9 O -0.464 6.464 10 N -0.345 5.345 11 C 0.031 3.969 12 H 0.107 0.893 13 C -0.216 4.216 14 C 0.044 3.956 15 H 0.104 0.896 16 N -0.365 5.365 17 C -0.372 4.372 18 H 0.098 0.902 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.800 3.200 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.226 1.226 25 C -0.180 4.180 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.243 0.757 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.206 0.794 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.431 24.910 6.318 25.703 hybrid contribution 0.692 -1.724 -0.702 1.986 sum 0.261 23.186 5.616 23.858 Atomic orbital electron populations 1.20297 0.85518 1.03836 1.03628 1.22709 0.97926 0.89224 0.95400 1.77125 0.87505 1.22928 1.27794 1.48708 1.06194 1.05552 1.53117 1.22434 0.82840 0.94598 1.05474 1.23683 0.99139 0.85503 0.94693 1.20232 0.93651 0.93357 1.26152 1.17499 0.85204 0.84250 0.74649 1.90709 1.18007 1.84864 1.52803 1.45342 1.09905 1.04443 1.74817 1.21459 0.98516 0.80109 0.96809 0.89340 1.24207 1.00959 0.99392 0.97082 1.22029 0.93225 0.86661 0.93668 0.89572 1.42631 1.47626 1.02918 1.43360 1.19756 1.13963 0.92186 1.11338 0.90193 1.25565 1.03030 0.95594 1.02809 1.69823 1.48042 0.97831 1.46478 0.85107 0.78437 0.77887 0.78544 1.18729 1.22105 1.22573 1.23654 0.97813 0.98807 0.97772 0.90088 0.90049 0.89841 0.88617 0.85869 0.88721 0.75719 0.75189 0.91402 0.92797 0.79431 0.94117 0.89243 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 9.92 71.24 0.71 -0.97 16 2 C 0.11 2.86 7.26 43.51 0.32 3.18 16 3 N -0.33 -7.73 12.50 -46.67 -0.58 -8.31 16 4 N -0.36 -5.74 3.98 -367.76 -1.46 -7.20 16 5 C 0.09 0.49 11.44 127.77 1.46 1.95 16 6 C 0.12 1.88 10.99 84.28 0.93 2.81 16 7 C -0.32 -7.50 6.13 -20.15 -0.12 -7.62 16 8 C 0.59 16.61 7.81 86.67 0.68 17.28 16 9 O -0.58 -20.59 14.54 -4.07 -0.06 -20.65 16 10 N -0.69 -16.56 5.25 -443.29 -2.33 -18.89 16 11 C 0.14 3.95 4.30 45.52 0.20 4.15 16 12 H 0.09 2.77 7.50 -2.39 -0.02 2.75 16 13 C -0.17 -6.03 7.70 31.21 0.24 -5.79 16 14 C 0.15 5.56 4.37 45.61 0.20 5.76 16 15 H 0.09 2.87 8.10 -2.38 -0.02 2.85 16 16 N -0.73 -35.31 5.41 -320.00 -1.73 -37.04 16 17 C -0.24 -12.89 9.97 84.03 0.84 -12.05 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 20 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 21 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 C -0.14 -4.09 7.57 31.12 0.24 -3.85 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 2.09 6.55 -2.39 -0.02 2.07 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.23 1.26 7.46 -2.91 -0.02 1.24 16 33 H 0.41 7.06 7.63 -92.71 -0.71 6.35 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.37 19.67 7.93 -92.71 -0.73 18.94 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 2.65 8.12 -2.39 -0.02 2.63 16 Total: -1.00 -75.95 333.13 1.92 -74.03 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.36 Total: 28.50 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.14 Total: 0.92 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -5.82 Total: -129.94 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.95 1.92 -74.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020032066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.404 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds