Wall clock time and date at job start Mon Mar 30 2020 23:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.12922 * 2 1 4 4 C 1.39868 * 107.91980 * 180.14843 * 3 2 1 5 5 C 1.50706 * 125.89709 * 179.86680 * 4 3 2 6 6 C 1.50698 * 109.47294 * 124.71300 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99846 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.85624 * 336.19226 * 9 8 6 11 11 C 1.53782 * 113.61524 * 107.50022 * 9 8 6 12 12 C 1.53785 * 87.08211 * 89.11527 * 11 9 8 13 13 H 1.09001 * 113.61140 * 270.88764 * 12 11 9 14 14 N 1.46495 * 113.69014 * 139.99514 * 12 11 9 15 15 C 1.36940 * 120.00225 * 107.46954 * 14 12 11 16 16 H 1.07999 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00066 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99936 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99998 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46951 * 89.99975 * 19 17 15 21 21 H 1.48505 * 109.46826 * 210.00302 * 19 17 15 22 22 H 1.48500 * 109.47039 * 330.00003 * 19 17 15 23 23 C 1.53785 * 113.61452 * 204.99807 * 9 8 6 24 24 N 1.30831 * 108.20408 * 359.59650 * 4 3 2 25 25 N 1.34948 * 126.12730 * 179.70542 * 2 1 3 26 26 H 0.97002 * 126.03407 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.46988 * 270.32041 * 1 2 3 28 28 H 1.09000 * 109.46579 * 30.32294 * 1 2 3 29 29 H 1.08999 * 109.46869 * 150.31475 * 1 2 3 30 30 H 1.08003 * 126.03786 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46953 * 244.70742 * 5 4 3 32 32 H 1.09000 * 109.47318 * 4.70340 * 5 4 3 33 33 H 0.97002 * 119.99767 * 359.97438 * 8 6 5 34 34 H 1.08996 * 113.61532 * 203.66298 * 11 9 8 35 35 H 1.09001 * 113.61507 * 334.56982 * 11 9 8 36 36 H 0.96999 * 120.00086 * 287.45885 * 14 12 11 37 37 H 0.97005 * 119.99870 * 180.02562 * 18 17 15 38 38 H 1.08994 * 113.61299 * 25.42820 * 23 9 8 39 39 H 1.08997 * 113.61934 * 156.25200 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7390 1.1793 1.1582 7 8 5.4102 0.2928 1.9178 8 7 6.8949 1.8430 1.3572 9 6 7.7546 1.4933 2.4907 10 1 7.2093 1.0131 3.3032 11 6 9.0381 0.7503 2.0841 12 6 9.6986 2.1317 1.9408 13 1 9.5904 2.5664 0.9471 14 7 11.0766 2.1794 2.4357 15 6 12.1194 2.2584 1.5515 16 1 11.9258 2.2850 0.4894 17 6 13.4250 2.3041 2.0205 18 7 13.6608 2.2722 3.3150 19 14 14.8475 2.4111 0.8143 20 1 15.1586 3.8371 0.5412 21 1 16.0411 1.7465 1.3965 22 1 14.4733 1.7345 -0.4535 23 6 8.6620 2.6452 2.9541 24 7 3.6334 -0.6524 0.0033 25 7 2.3026 -1.0900 0.0056 26 1 2.0055 -2.0133 0.0107 27 1 -0.3633 0.0057 1.0276 28 1 -0.3632 0.8871 -0.5189 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9741 2.1211 0.0004 31 1 5.4035 1.3961 -0.9381 32 1 4.5485 2.5822 0.0769 33 1 7.1577 2.5523 0.7498 34 1 9.4634 0.1438 2.8837 35 1 8.9496 0.2089 1.1422 36 1 11.2505 2.1553 3.3897 37 1 14.5733 2.3045 3.6428 38 1 8.2697 3.6335 2.7144 39 1 8.9833 2.5576 3.9919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020065721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:19 Heat of formation + Delta-G solvation = 64.194084 kcal Electronic energy + Delta-G solvation = -20542.410508 eV Core-core repulsion = 17294.442671 eV Total energy + Delta-G solvation = -3247.967837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43575 -39.76839 -37.86087 -33.97206 -33.52035 -32.55067 -31.73431 -29.95134 -28.62895 -27.20214 -25.06900 -24.51316 -22.43347 -21.39408 -20.70850 -19.63480 -18.85170 -17.60282 -17.17577 -16.85804 -15.71854 -15.33984 -14.95741 -14.84687 -14.23853 -14.01158 -13.85333 -13.56365 -13.45555 -13.20354 -12.96989 -12.66197 -12.54746 -12.26817 -11.85149 -11.80174 -11.57514 -10.88480 -10.75334 -10.67365 -10.27245 -10.19464 -9.88980 -9.75148 -9.52907 -9.38227 -8.88112 -8.76057 -8.68974 -6.95965 -5.78203 -3.07044 1.72031 2.52947 2.68947 2.79739 3.40237 3.43028 3.48328 3.50131 4.32690 4.44525 4.59172 4.72916 4.94041 4.99520 5.07708 5.12865 5.23974 5.29555 5.41452 5.48765 5.49567 5.54315 5.56193 5.91175 5.91808 5.97759 6.20289 6.29709 6.37460 6.44559 6.58573 6.69434 6.75794 7.12138 7.14041 7.57772 7.68865 7.70301 8.40237 8.41718 9.51422 10.09375 10.43651 11.44149 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.048049 B = 0.002629 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.593623 B =10646.753767 C =10822.619586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.266 4.266 4 C 0.090 3.910 5 C -0.062 4.062 6 C 0.515 3.485 7 O -0.528 6.528 8 N -0.709 5.709 9 C 0.117 3.883 10 H 0.094 0.906 11 C -0.176 4.176 12 C 0.167 3.833 13 H 0.074 0.926 14 N -0.713 5.713 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.159 4.159 24 N -0.259 5.259 25 N -0.476 5.476 26 H 0.436 0.564 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.400 0.600 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.486 -0.614 -7.571 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.295 4.295 4 C -0.078 4.078 5 C -0.104 4.104 6 C 0.300 3.700 7 O -0.403 6.403 8 N -0.360 5.360 9 C 0.012 3.988 10 H 0.112 0.888 11 C -0.218 4.218 12 C 0.055 3.945 13 H 0.092 0.908 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.199 4.199 24 N -0.081 5.081 25 N -0.185 5.185 26 H 0.279 0.721 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.841 -2.274 -7.150 26.908 hybrid contribution 0.409 0.568 -0.557 0.894 sum -25.431 -1.706 -7.707 26.628 Atomic orbital electron populations 1.20441 0.87356 1.03797 1.03414 1.21083 0.94536 0.87848 1.01462 1.21077 0.91371 0.99150 1.17899 1.21514 0.94465 0.91603 1.00230 1.20057 0.92012 0.99262 0.99032 1.20302 0.81387 0.82052 0.86257 1.90733 1.72810 1.30177 1.46592 1.45669 1.21254 1.38691 1.30398 1.21782 0.90230 0.98073 0.88743 0.88814 1.24295 0.95443 1.00589 1.01520 1.21623 0.84688 0.92774 0.95448 0.90833 1.42407 0.99367 1.86712 1.06568 1.19294 0.85887 1.42695 0.89612 0.91112 1.24775 0.97439 1.02830 0.95926 1.69663 1.19591 1.57385 1.11367 0.86183 0.82349 0.77534 0.80083 1.21694 1.21766 1.20740 1.23853 0.97275 0.97050 1.01718 1.77452 0.95465 1.12489 1.22716 1.46349 1.04219 1.08179 1.59753 0.72056 0.90182 0.89584 0.91197 0.83553 0.87128 0.86906 0.76566 0.89728 0.92420 0.78029 0.93454 0.91759 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.43 36.01 0.38 -0.05 16 2 C 0.08 0.71 7.21 -82.26 -0.59 0.11 16 3 C -0.27 -2.69 10.64 -40.01 -0.43 -3.11 16 4 C 0.09 1.12 6.02 -82.41 -0.50 0.62 16 5 C -0.06 -0.63 6.28 -29.03 -0.18 -0.81 16 6 C 0.52 7.26 7.82 -10.99 -0.09 7.17 16 7 O -0.53 -9.87 15.16 5.56 0.08 -9.78 16 8 N -0.71 -9.21 5.26 -53.02 -0.28 -9.49 16 9 C 0.12 1.83 4.32 -67.12 -0.29 1.54 16 10 H 0.09 1.58 7.46 -51.93 -0.39 1.19 16 11 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 12 C 0.17 3.23 4.35 -67.12 -0.29 2.93 16 13 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 14 N -0.71 -17.76 5.40 -52.64 -0.28 -18.05 16 15 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.16 -2.55 7.58 -25.91 -0.20 -2.74 16 24 N -0.26 -3.70 12.04 33.67 0.41 -3.30 16 25 N -0.48 -4.98 7.36 33.48 0.25 -4.74 16 26 H 0.44 3.20 8.96 -182.61 -1.64 1.56 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.40 4.09 8.70 -40.82 -0.36 3.73 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 10.21 7.93 -40.82 -0.32 9.89 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.50 8.12 -51.93 -0.42 1.07 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -36.34 335.54 -8.60 -44.93 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.90 Total: 10.58 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.63 Total: -5.11 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.81 Total: -63.01 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.34 -8.60 -44.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020065721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.129 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds