Wall clock time and date at job start Mon Mar 30 2020 23:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.12922 * 2 1 4 4 C 1.39868 * 107.91980 * 180.14843 * 3 2 1 5 5 C 1.50706 * 125.89709 * 179.86680 * 4 3 2 6 6 C 1.50698 * 109.47294 * 124.71300 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99846 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.85624 * 336.19226 * 9 8 6 11 11 C 1.53782 * 113.61524 * 107.50022 * 9 8 6 12 12 C 1.53785 * 87.08211 * 89.11527 * 11 9 8 13 13 H 1.09001 * 113.61140 * 270.88764 * 12 11 9 14 14 N 1.46495 * 113.69014 * 139.99514 * 12 11 9 15 15 C 1.36940 * 120.00225 * 107.46954 * 14 12 11 16 16 H 1.07999 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00066 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99936 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99998 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46951 * 89.99975 * 19 17 15 21 21 H 1.48505 * 109.46826 * 210.00302 * 19 17 15 22 22 H 1.48500 * 109.47039 * 330.00003 * 19 17 15 23 23 C 1.53785 * 113.61452 * 204.99807 * 9 8 6 24 24 N 1.30831 * 108.20408 * 359.59650 * 4 3 2 25 25 N 1.34948 * 126.12730 * 179.70542 * 2 1 3 26 26 H 0.97002 * 126.03407 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.46988 * 270.32041 * 1 2 3 28 28 H 1.09000 * 109.46579 * 30.32294 * 1 2 3 29 29 H 1.08999 * 109.46869 * 150.31475 * 1 2 3 30 30 H 1.08003 * 126.03786 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46953 * 244.70742 * 5 4 3 32 32 H 1.09000 * 109.47318 * 4.70340 * 5 4 3 33 33 H 0.97002 * 119.99767 * 359.97438 * 8 6 5 34 34 H 1.08996 * 113.61532 * 203.66298 * 11 9 8 35 35 H 1.09001 * 113.61507 * 334.56982 * 11 9 8 36 36 H 0.96999 * 120.00086 * 287.45885 * 14 12 11 37 37 H 0.97005 * 119.99870 * 180.02562 * 18 17 15 38 38 H 1.08994 * 113.61299 * 25.42820 * 23 9 8 39 39 H 1.08997 * 113.61934 * 156.25200 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7390 1.1793 1.1582 7 8 5.4102 0.2928 1.9178 8 7 6.8949 1.8430 1.3572 9 6 7.7546 1.4933 2.4907 10 1 7.2093 1.0131 3.3032 11 6 9.0381 0.7503 2.0841 12 6 9.6986 2.1317 1.9408 13 1 9.5904 2.5664 0.9471 14 7 11.0766 2.1794 2.4357 15 6 12.1194 2.2584 1.5515 16 1 11.9258 2.2850 0.4894 17 6 13.4250 2.3041 2.0205 18 7 13.6608 2.2722 3.3150 19 14 14.8475 2.4111 0.8143 20 1 15.1586 3.8371 0.5412 21 1 16.0411 1.7465 1.3965 22 1 14.4733 1.7345 -0.4535 23 6 8.6620 2.6452 2.9541 24 7 3.6334 -0.6524 0.0033 25 7 2.3026 -1.0900 0.0056 26 1 2.0055 -2.0133 0.0107 27 1 -0.3633 0.0057 1.0276 28 1 -0.3632 0.8871 -0.5189 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9741 2.1211 0.0004 31 1 5.4035 1.3961 -0.9381 32 1 4.5485 2.5822 0.0769 33 1 7.1577 2.5523 0.7498 34 1 9.4634 0.1438 2.8837 35 1 8.9496 0.2089 1.1422 36 1 11.2505 2.1553 3.3897 37 1 14.5733 2.3045 3.6428 38 1 8.2697 3.6335 2.7144 39 1 8.9833 2.5576 3.9919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020065721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:18 Heat of formation + Delta-G solvation = 36.554353 kcal Electronic energy + Delta-G solvation = -20543.609057 eV Core-core repulsion = 17294.442671 eV Total energy + Delta-G solvation = -3249.166386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20181 -41.00844 -39.22737 -35.74161 -34.37131 -33.95159 -32.45878 -31.77786 -29.54275 -27.79442 -26.54968 -26.33645 -24.01841 -22.53826 -21.44565 -20.56731 -20.29169 -19.11993 -18.37915 -17.94882 -17.05785 -16.65195 -16.25772 -15.76573 -15.70561 -15.52388 -14.93149 -14.61805 -14.36969 -14.19172 -13.88863 -13.62580 -13.48402 -13.40337 -13.30636 -13.04229 -12.80747 -12.74248 -12.55843 -12.15620 -11.81780 -11.72144 -11.46767 -11.17883 -10.89494 -10.82917 -10.23892 -9.95774 -9.48419 -8.97793 -7.93776 -5.22294 0.98571 1.48559 1.50175 1.58427 1.71080 1.73098 2.02158 2.36900 2.57547 3.37710 3.61593 3.73736 3.79659 3.88366 3.98369 4.09446 4.22937 4.35104 4.35304 4.48289 4.56533 4.75649 4.77844 4.80555 4.89836 4.92527 4.96345 5.13359 5.15531 5.23466 5.29909 5.30822 5.52378 5.72882 5.75505 6.28302 6.49761 6.66298 6.80417 7.34270 7.36447 8.11293 8.33537 9.29545 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.048049 B = 0.002629 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.593623 B =10646.753767 C =10822.619586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.085 3.915 3 C -0.284 4.284 4 C 0.072 3.928 5 C -0.055 4.055 6 C 0.513 3.487 7 O -0.579 6.579 8 N -0.697 5.697 9 C 0.135 3.865 10 H 0.082 0.918 11 C -0.175 4.175 12 C 0.155 3.845 13 H 0.087 0.913 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.079 0.921 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.270 1.270 23 C -0.141 4.141 24 N -0.320 5.320 25 N -0.479 5.479 26 H 0.444 0.556 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.417 0.583 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.373 0.627 37 H 0.250 0.750 38 H 0.091 0.909 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.546 0.777 -9.339 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.312 4.312 4 C -0.095 4.095 5 C -0.096 4.096 6 C 0.301 3.699 7 O -0.457 6.457 8 N -0.349 5.349 9 C 0.029 3.971 10 H 0.101 0.899 11 C -0.218 4.218 12 C 0.045 3.955 13 H 0.105 0.895 14 N -0.365 5.365 15 C -0.374 4.374 16 H 0.097 0.903 17 C -0.271 4.271 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.211 1.211 21 H -0.226 1.226 22 H -0.195 1.195 23 C -0.180 4.180 24 N -0.143 5.143 25 N -0.189 5.189 26 H 0.289 0.711 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.189 0.811 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.949 -0.861 -8.979 29.368 hybrid contribution 0.909 0.082 -0.023 0.913 sum -27.040 -0.780 -9.002 28.510 Atomic orbital electron populations 1.20592 0.84173 1.05461 1.04430 1.21807 0.96397 0.87034 0.99176 1.21477 0.90597 1.00744 1.18421 1.21997 0.96140 0.91468 0.99881 1.20192 0.90782 1.00967 0.97643 1.21034 0.81428 0.80923 0.86558 1.90718 1.73945 1.32414 1.48663 1.45539 1.20629 1.38941 1.29809 1.21430 0.89392 0.97046 0.89273 0.89941 1.24167 0.97025 0.99850 1.00712 1.21963 0.82772 0.93754 0.96989 0.89502 1.42615 1.01112 1.87045 1.05743 1.19719 0.86734 1.40564 0.90396 0.90265 1.25599 1.00111 1.03898 0.97525 1.69823 1.19554 1.59562 1.13203 0.85140 0.78830 0.77516 0.78278 1.21148 1.22587 1.19472 1.23651 0.95524 0.98446 1.00381 1.77349 0.97766 1.13966 1.25224 1.46409 1.03583 1.09230 1.59688 0.71066 0.89301 0.87842 0.89639 0.81091 0.85176 0.82909 0.74527 0.91683 0.92870 0.79460 0.94101 0.89058 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.43 71.24 0.74 0.18 16 2 C 0.08 1.36 7.21 41.41 0.30 1.66 16 3 C -0.28 -5.15 10.64 21.99 0.23 -4.91 16 4 C 0.07 1.71 6.02 43.10 0.26 1.97 16 5 C -0.05 -0.98 6.28 29.10 0.18 -0.80 16 6 C 0.51 13.75 7.82 87.66 0.69 14.44 16 7 O -0.58 -21.69 15.16 -3.04 -0.05 -21.74 16 8 N -0.70 -16.66 5.26 -440.04 -2.32 -18.98 16 9 C 0.14 4.09 4.32 45.52 0.20 4.29 16 10 H 0.08 2.77 7.46 -2.39 -0.02 2.75 16 11 C -0.18 -6.38 7.68 31.12 0.24 -6.14 16 12 C 0.16 5.84 4.35 45.52 0.20 6.04 16 13 H 0.09 3.04 8.10 -2.39 -0.02 3.02 16 14 N -0.73 -36.35 5.40 -320.44 -1.73 -38.08 16 15 C -0.24 -13.31 9.97 84.03 0.84 -12.48 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 18 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 19 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.14 -4.28 7.58 31.12 0.24 -4.04 16 24 N -0.32 -9.15 12.04 -47.38 -0.57 -9.72 16 25 N -0.48 -9.79 7.36 -48.00 -0.35 -10.14 16 26 H 0.44 6.45 8.96 -213.33 -1.91 4.54 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.15 1.43 8.12 -2.39 -0.02 1.42 16 33 H 0.42 7.16 8.70 -92.71 -0.81 6.36 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.37 20.17 7.93 -92.71 -0.73 19.44 16 37 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 Total: -1.00 -80.68 335.54 -0.49 -81.17 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -2.36 Total: 32.70 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.58 Total: -3.88 kcal Atomic # 7 Polarization: -131.65 SS G_CDS: -4.69 Total: -136.34 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -80.68 -0.49 -81.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020065721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.723 kcal (2) G-P(sol) polarization free energy of solvation -80.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds