Wall clock time and date at job start Mon Mar 30 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33319 * 126.10574 * 2 1 4 4 C 1.30860 * 109.68528 * 180.02562 * 3 2 1 5 5 N 1.34493 * 109.16303 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.47407 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10701 * 179.69375 * 2 1 3 8 8 C 1.46766 * 126.84744 * 359.96704 * 7 2 1 9 9 O 1.21677 * 120.00085 * 88.05309 * 8 7 2 10 10 N 1.34772 * 119.99555 * 268.05891 * 8 7 2 11 11 C 1.46506 * 119.99820 * 185.32904 * 10 8 7 12 12 H 1.09000 * 112.84646 * 23.80111 * 11 10 8 13 13 C 1.53774 * 113.61711 * 154.99748 * 11 10 8 14 14 C 1.53777 * 87.08060 * 139.98378 * 13 11 10 15 15 H 1.09011 * 113.61789 * 220.01960 * 14 13 11 16 16 N 1.46502 * 113.61726 * 89.20462 * 14 13 11 17 17 C 1.36936 * 120.00335 * 155.00097 * 16 14 13 18 18 H 1.08001 * 119.99551 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47327 * 89.99785 * 21 19 17 23 23 H 1.48497 * 109.47298 * 209.99811 * 21 19 17 24 24 H 1.48504 * 109.47205 * 329.99970 * 21 19 17 25 25 C 1.53778 * 113.61553 * 252.50083 * 11 10 8 26 26 H 1.09000 * 109.47281 * 90.02420 * 1 2 3 27 27 H 1.08997 * 109.47493 * 330.02322 * 1 2 3 28 28 H 1.09002 * 109.46784 * 210.02045 * 1 2 3 29 29 H 1.07999 * 125.41900 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47380 * 85.06737 * 6 5 4 31 31 H 1.08996 * 109.47588 * 205.07443 * 6 5 4 32 32 H 1.09004 * 109.46813 * 325.07193 * 6 5 4 33 33 H 0.97003 * 120.00748 * 5.33046 * 10 8 7 34 34 H 1.09001 * 113.61611 * 254.53186 * 13 11 10 35 35 H 1.09001 * 113.61309 * 25.35497 * 13 11 10 36 36 H 0.97002 * 119.99336 * 334.99906 * 16 14 13 37 37 H 0.96998 * 119.99778 * 180.02562 * 20 19 17 38 38 H 1.09001 * 113.61695 * 334.56186 * 25 11 10 39 39 H 1.08996 * 113.61610 * 105.46982 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6362 -0.0015 6 6 4.8305 -1.4497 -0.0018 7 6 2.3123 -1.1041 0.0059 8 6 1.8821 -2.5073 0.0141 9 8 1.6690 -3.0844 -1.0357 10 7 1.7229 -3.1564 1.1844 11 6 1.4076 -4.5871 1.1915 12 1 1.7234 -5.0946 0.2800 13 6 1.8410 -5.3071 2.4793 14 6 0.5187 -6.0875 2.3945 15 1 0.0356 -6.2344 3.3606 16 7 0.6154 -7.3230 1.6133 17 6 -0.2566 -8.3523 1.8490 18 1 -1.0153 -8.2533 2.6113 19 6 -0.1646 -9.5231 1.1091 20 7 0.7604 -9.6438 0.1805 21 14 -1.3535 -10.9274 1.4312 22 1 -2.5516 -10.7695 0.5681 23 1 -0.6887 -12.2192 1.1238 24 1 -1.7655 -10.9099 2.8579 25 6 -0.0423 -4.8963 1.6000 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 0.8901 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 4.3970 1.3745 -0.0011 30 1 5.1816 -1.5787 1.0220 31 1 4.6160 -2.4252 -0.4381 32 1 5.6007 -0.9503 -0.5897 33 1 1.8172 -2.6764 2.0221 34 1 2.7254 -5.9318 2.3538 35 1 1.9067 -4.6496 3.3462 36 1 1.2970 -7.4119 0.9289 37 1 0.8245 -10.4618 -0.3367 38 1 -0.4930 -4.1268 2.2269 39 1 -0.6783 -5.1893 0.7648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020262277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:32 Heat of formation + Delta-G solvation = 58.658170 kcal Electronic energy + Delta-G solvation = -21289.836437 eV Core-core repulsion = 18041.628545 eV Total energy + Delta-G solvation = -3248.207892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37660 -39.67787 -37.90937 -34.68735 -34.09694 -32.74844 -31.35923 -29.76025 -28.55140 -26.36253 -25.16660 -24.69453 -23.38556 -22.07120 -20.86984 -20.01739 -18.83132 -17.67854 -17.41410 -16.50927 -16.06535 -15.73505 -15.23484 -14.90265 -14.35000 -14.08624 -13.85241 -13.75050 -13.27240 -13.12748 -12.89633 -12.75119 -12.50722 -12.29983 -12.13653 -12.04189 -11.72515 -10.89639 -10.85545 -10.50694 -10.32362 -10.20127 -10.04635 -9.80996 -9.76756 -9.68549 -8.95506 -8.81080 -8.56538 -7.04014 -5.82017 -3.12258 1.53440 2.06020 2.76127 2.80672 3.31274 3.41813 3.46797 3.48505 4.28642 4.39243 4.53881 4.57249 4.76206 4.87101 5.01089 5.04145 5.11695 5.18163 5.33561 5.43616 5.60689 5.69863 5.80289 5.83131 5.91952 5.95902 6.03880 6.12490 6.29386 6.39810 6.55062 6.66075 6.72792 6.84510 6.97154 7.51070 7.67106 7.76557 8.16363 8.36120 9.47022 10.02550 10.36474 11.40159 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.003373 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.421672 B = 8300.100556 C = 8536.305591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.056 3.944 3 N -0.493 5.493 4 C 0.196 3.804 5 N -0.438 5.438 6 C 0.068 3.932 7 C -0.076 4.076 8 C 0.591 3.409 9 O -0.519 6.519 10 N -0.704 5.704 11 C 0.124 3.876 12 H 0.114 0.886 13 C -0.163 4.163 14 C 0.172 3.828 15 H 0.069 0.931 16 N -0.705 5.705 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.183 4.183 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.210 0.790 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.071 0.929 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.782 19.852 3.623 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 N -0.212 5.212 4 C -0.086 4.086 5 N -0.122 5.122 6 C -0.075 4.075 7 C -0.192 4.192 8 C 0.374 3.626 9 O -0.393 6.393 10 N -0.354 5.354 11 C 0.020 3.980 12 H 0.132 0.868 13 C -0.203 4.203 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.226 4.226 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.406 19.915 2.898 21.445 hybrid contribution 0.197 -1.256 0.172 1.283 sum 7.602 18.659 3.070 20.381 Atomic orbital electron populations 1.20140 0.87001 1.02976 1.03015 1.20868 0.96450 0.86803 1.03600 1.70004 1.00374 1.30169 1.20620 1.24968 0.97208 0.81645 1.04738 1.45285 1.05913 1.07729 1.53236 1.22184 0.84559 0.96647 1.04081 1.20861 0.84765 0.95359 1.18250 1.16938 0.77870 0.83280 0.84544 1.90890 1.49812 1.66874 1.31729 1.46173 1.70722 1.10968 1.07546 1.22754 0.97476 0.77918 0.99823 0.86842 1.23907 1.01134 0.99191 0.96086 1.20908 0.92710 0.85890 0.94637 0.91250 1.42193 1.38699 1.11390 1.42070 1.19270 1.09379 0.93035 1.16028 0.90881 1.24783 0.98999 0.98352 0.98577 1.69666 1.35325 1.27563 1.25238 0.86159 0.80297 0.81849 0.77671 1.21594 1.21748 1.20664 1.24318 0.95780 1.00503 1.01967 0.90691 0.90577 0.91096 0.77307 0.89830 0.89231 0.88878 0.76727 0.90812 0.90260 0.78016 0.93353 0.91075 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.24 36.00 0.37 -0.47 16 2 C 0.06 0.74 7.15 -82.52 -0.59 0.15 16 3 N -0.49 -6.29 11.20 -10.65 -0.12 -6.41 16 4 C 0.20 1.89 12.52 -90.57 -1.13 0.76 16 5 N -0.44 -4.48 3.17 -121.97 -0.39 -4.87 16 6 C 0.07 0.45 11.06 59.85 0.66 1.12 16 7 C -0.08 -1.00 6.66 -82.14 -0.55 -1.55 16 8 C 0.59 8.94 6.73 -12.82 -0.09 8.85 16 9 O -0.52 -10.19 16.75 5.21 0.09 -10.10 16 10 N -0.70 -9.23 5.35 -54.30 -0.29 -9.52 16 11 C 0.12 1.96 4.09 -67.12 -0.27 1.69 16 12 H 0.11 2.17 7.53 -51.93 -0.39 1.78 16 13 C -0.16 -2.44 7.58 -25.92 -0.20 -2.64 16 14 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 15 H 0.07 1.29 8.10 -51.92 -0.42 0.86 16 16 N -0.71 -17.28 5.31 -52.64 -0.28 -17.56 16 17 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.18 -3.13 7.68 -25.92 -0.20 -3.33 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.79 7.93 -51.93 -0.41 0.37 16 29 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.76 7.80 -51.93 -0.41 0.35 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.40 4.15 8.71 -40.82 -0.36 3.80 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -34.55 336.75 -8.42 -42.97 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.66 Total: 10.23 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.55 Total: 0.25 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.35 Total: -65.56 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.55 -8.42 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020262277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.624 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds