Wall clock time and date at job start Mon Mar 30 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33319 * 126.10574 * 2 1 4 4 C 1.30860 * 109.68528 * 180.02562 * 3 2 1 5 5 N 1.34493 * 109.16303 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.47407 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10701 * 179.69375 * 2 1 3 8 8 C 1.46766 * 126.84744 * 359.96704 * 7 2 1 9 9 O 1.21677 * 120.00085 * 88.05309 * 8 7 2 10 10 N 1.34772 * 119.99555 * 268.05891 * 8 7 2 11 11 C 1.46506 * 119.99820 * 185.32904 * 10 8 7 12 12 H 1.09000 * 112.84646 * 23.80111 * 11 10 8 13 13 C 1.53774 * 113.61711 * 154.99748 * 11 10 8 14 14 C 1.53777 * 87.08060 * 139.98378 * 13 11 10 15 15 H 1.09011 * 113.61789 * 220.01960 * 14 13 11 16 16 N 1.46502 * 113.61726 * 89.20462 * 14 13 11 17 17 C 1.36936 * 120.00335 * 155.00097 * 16 14 13 18 18 H 1.08001 * 119.99551 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47327 * 89.99785 * 21 19 17 23 23 H 1.48497 * 109.47298 * 209.99811 * 21 19 17 24 24 H 1.48504 * 109.47205 * 329.99970 * 21 19 17 25 25 C 1.53778 * 113.61553 * 252.50083 * 11 10 8 26 26 H 1.09000 * 109.47281 * 90.02420 * 1 2 3 27 27 H 1.08997 * 109.47493 * 330.02322 * 1 2 3 28 28 H 1.09002 * 109.46784 * 210.02045 * 1 2 3 29 29 H 1.07999 * 125.41900 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47380 * 85.06737 * 6 5 4 31 31 H 1.08996 * 109.47588 * 205.07443 * 6 5 4 32 32 H 1.09004 * 109.46813 * 325.07193 * 6 5 4 33 33 H 0.97003 * 120.00748 * 5.33046 * 10 8 7 34 34 H 1.09001 * 113.61611 * 254.53186 * 13 11 10 35 35 H 1.09001 * 113.61309 * 25.35497 * 13 11 10 36 36 H 0.97002 * 119.99336 * 334.99906 * 16 14 13 37 37 H 0.96998 * 119.99778 * 180.02562 * 20 19 17 38 38 H 1.09001 * 113.61695 * 334.56186 * 25 11 10 39 39 H 1.08996 * 113.61610 * 105.46982 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6362 -0.0015 6 6 4.8305 -1.4497 -0.0018 7 6 2.3123 -1.1041 0.0059 8 6 1.8821 -2.5073 0.0141 9 8 1.6690 -3.0844 -1.0357 10 7 1.7229 -3.1564 1.1844 11 6 1.4076 -4.5871 1.1915 12 1 1.7234 -5.0946 0.2800 13 6 1.8410 -5.3071 2.4793 14 6 0.5187 -6.0875 2.3945 15 1 0.0356 -6.2344 3.3606 16 7 0.6154 -7.3230 1.6133 17 6 -0.2566 -8.3523 1.8490 18 1 -1.0153 -8.2533 2.6113 19 6 -0.1646 -9.5231 1.1091 20 7 0.7604 -9.6438 0.1805 21 14 -1.3535 -10.9274 1.4312 22 1 -2.5516 -10.7695 0.5681 23 1 -0.6887 -12.2192 1.1238 24 1 -1.7655 -10.9099 2.8579 25 6 -0.0423 -4.8963 1.6000 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 0.8901 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 4.3970 1.3745 -0.0011 30 1 5.1816 -1.5787 1.0220 31 1 4.6160 -2.4252 -0.4381 32 1 5.6007 -0.9503 -0.5897 33 1 1.8172 -2.6764 2.0221 34 1 2.7254 -5.9318 2.3538 35 1 1.9067 -4.6496 3.3462 36 1 1.2970 -7.4119 0.9289 37 1 0.8245 -10.4618 -0.3367 38 1 -0.4930 -4.1268 2.2269 39 1 -0.6783 -5.1893 0.7648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020262277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:31 Heat of formation + Delta-G solvation = 34.301265 kcal Electronic energy + Delta-G solvation = -21290.892632 eV Core-core repulsion = 18041.628545 eV Total energy + Delta-G solvation = -3249.264087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.23068 -40.97931 -39.31681 -35.77666 -35.45130 -34.36529 -32.37671 -31.57078 -29.38984 -27.16661 -26.53859 -26.29944 -24.96549 -23.30746 -21.73928 -21.11939 -20.19253 -19.36623 -18.67222 -17.71551 -17.06207 -16.73894 -16.55954 -16.28149 -15.79292 -15.52824 -15.00811 -14.99920 -14.48728 -14.37422 -14.01211 -13.63966 -13.57830 -13.37027 -13.31538 -13.25018 -13.12431 -12.81016 -12.65348 -12.17313 -11.86940 -11.79777 -11.55600 -11.34010 -10.97117 -10.85956 -10.61918 -10.11768 -9.47273 -9.03629 -7.96163 -5.25742 0.66172 1.05771 1.47683 1.49763 1.57911 1.76455 1.95980 2.26695 2.55310 3.35978 3.50998 3.59733 3.67913 3.79330 3.82023 3.87711 4.11967 4.26656 4.28570 4.31456 4.33558 4.60767 4.71389 4.74735 4.81244 4.83385 4.94817 4.97602 5.11937 5.13300 5.20064 5.27658 5.49169 5.50611 5.62254 6.13633 6.26260 6.38921 6.91816 7.03865 7.31384 8.07240 8.28286 9.27302 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.003373 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.421672 B = 8300.100556 C = 8536.305591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.046 3.954 3 N -0.525 5.525 4 C 0.216 3.784 5 N -0.437 5.437 6 C 0.062 3.938 7 C -0.102 4.102 8 C 0.598 3.402 9 O -0.574 6.574 10 N -0.683 5.683 11 C 0.131 3.869 12 H 0.074 0.926 13 C -0.134 4.134 14 C 0.151 3.849 15 H 0.080 0.920 16 N -0.722 5.722 17 C -0.243 4.243 18 H 0.082 0.918 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.975 3.025 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.264 1.264 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.257 0.743 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.417 0.583 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.106 0.894 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 21.929 5.767 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.245 5.245 4 C -0.066 4.066 5 N -0.120 5.120 6 C -0.078 4.078 7 C -0.218 4.218 8 C 0.383 3.617 9 O -0.452 6.452 10 N -0.334 5.334 11 C 0.026 3.974 12 H 0.093 0.907 13 C -0.174 4.174 14 C 0.040 3.960 15 H 0.098 0.902 16 N -0.360 5.360 17 C -0.375 4.375 18 H 0.100 0.900 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.189 1.189 25 C -0.214 4.214 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.273 0.727 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.255 0.745 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.236 22.047 5.127 24.087 hybrid contribution -0.016 -1.753 -0.465 1.813 sum 8.220 20.294 4.662 22.387 Atomic orbital electron populations 1.20169 0.86596 1.03560 1.02858 1.21139 0.97164 0.87084 1.03359 1.70021 1.01742 1.30277 1.22418 1.25899 0.97571 0.81732 1.01365 1.45495 1.05676 1.08282 1.52521 1.22453 0.83838 0.95538 1.06015 1.20529 0.86521 0.93918 1.20881 1.17187 0.76682 0.83924 0.83949 1.90866 1.52250 1.68399 1.33688 1.45899 1.69644 1.09759 1.08075 1.22348 0.96819 0.79277 0.98936 0.90748 1.23727 0.98404 0.98383 0.96865 1.21239 0.95769 0.84600 0.94394 0.90231 1.42385 1.38059 1.12938 1.42624 1.19715 1.09159 0.93515 1.15112 0.89972 1.25615 1.01097 1.01160 0.99083 1.69832 1.37567 1.27930 1.26846 0.85119 0.77906 0.78435 0.78173 1.21765 1.22345 1.18881 1.24197 0.95883 1.00479 1.00825 0.91224 0.89227 0.91221 0.72706 0.87535 0.91595 0.85645 0.74520 0.91580 0.85671 0.79633 0.94058 0.87590 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.24 71.23 0.73 -0.92 16 2 C 0.05 1.16 7.15 41.96 0.30 1.46 16 3 N -0.53 -12.33 11.20 -187.59 -2.10 -14.43 16 4 C 0.22 3.46 12.52 180.33 2.26 5.72 16 5 N -0.44 -7.92 3.17 -539.81 -1.71 -9.63 16 6 C 0.06 0.68 11.06 127.77 1.41 2.09 16 7 C -0.10 -2.59 6.66 40.01 0.27 -2.32 16 8 C 0.60 18.13 6.73 86.47 0.58 18.71 16 9 O -0.57 -23.54 16.75 -4.27 -0.07 -23.61 16 10 N -0.68 -17.09 5.35 -443.93 -2.37 -19.46 16 11 C 0.13 4.11 4.09 45.51 0.19 4.30 16 12 H 0.07 3.00 7.53 -2.39 -0.02 2.98 16 13 C -0.13 -3.74 7.58 31.12 0.24 -3.50 16 14 C 0.15 5.55 4.56 45.52 0.21 5.76 16 15 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 16 N -0.72 -36.04 5.31 -320.44 -1.70 -37.74 16 17 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 20 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 21 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 25 C -0.17 -5.75 7.68 31.12 0.24 -5.52 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.51 7.93 -2.39 -0.02 1.50 16 29 H 0.26 1.29 8.06 -2.91 -0.02 1.27 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 32 H 0.13 0.54 8.14 -2.38 -0.02 0.53 16 33 H 0.42 7.49 8.71 -92.71 -0.81 6.68 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.13 2.39 8.12 -2.39 -0.02 2.37 16 36 H 0.37 20.29 7.90 -92.71 -0.73 19.56 16 37 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -78.93 336.75 1.60 -77.33 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.47 Total: 30.03 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 7.72 Total: 9.23 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -7.61 Total: -141.17 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.07 Total: -23.61 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -78.93 1.60 -77.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020262277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.627 kcal (2) G-P(sol) polarization free energy of solvation -78.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds