Wall clock time and date at job start Mon Mar 30 2020 23:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.41735 * 2 1 4 4 C 1.33320 * 109.68264 * 179.74666 * 3 2 1 5 5 C 1.36656 * 107.78540 * 0.37342 * 4 3 2 6 6 C 1.46770 * 126.84321 * 179.90322 * 5 4 3 7 7 O 1.21690 * 119.99844 * 185.03086 * 6 5 4 8 8 N 1.34774 * 119.99957 * 5.02210 * 6 5 4 9 9 C 1.46502 * 119.99699 * 174.58341 * 8 6 5 10 10 H 1.08996 * 112.85321 * 23.80517 * 9 8 6 11 11 C 1.53781 * 113.61319 * 155.00087 * 9 8 6 12 12 C 1.53785 * 87.07978 * 89.11262 * 11 9 8 13 13 H 1.09000 * 113.61656 * 270.80060 * 12 11 9 14 14 N 1.46503 * 113.61300 * 139.97990 * 12 11 9 15 15 C 1.36942 * 120.00092 * 156.52664 * 14 12 11 16 16 H 1.07997 * 119.99459 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00170 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99929 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47193 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47281 * 300.00046 * 19 17 15 22 22 H 1.48504 * 109.47148 * 60.00430 * 19 17 15 23 23 C 1.53778 * 87.17492 * 25.39259 * 12 11 9 24 24 N 1.34495 * 125.41816 * 179.97438 * 2 1 3 25 25 C 1.46504 * 126.47284 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47316 * 270.03046 * 1 2 3 27 27 H 1.09000 * 109.47522 * 30.02853 * 1 2 3 28 28 H 1.09000 * 109.47585 * 150.02876 * 1 2 3 29 29 H 1.07999 * 126.10360 * 180.27813 * 4 3 2 30 30 H 0.96999 * 119.99917 * 354.58030 * 8 6 5 31 31 H 1.09003 * 113.61612 * 334.56887 * 11 9 8 32 32 H 1.09003 * 113.69275 * 203.66933 * 11 9 8 33 33 H 0.96997 * 120.00013 * 336.53338 * 14 12 11 34 34 H 0.97000 * 119.99924 * 359.97438 * 18 17 15 35 35 H 1.09000 * 113.61480 * 89.15270 * 23 12 11 36 36 H 1.08993 * 113.61313 * 220.06239 * 23 12 11 37 37 H 1.09002 * 109.47117 * 271.76119 * 25 24 2 38 38 H 1.09007 * 109.46767 * 31.76160 * 25 24 2 39 39 H 1.09000 * 109.47087 * 151.75926 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0056 5 6 3.5975 -0.6608 0.0007 6 6 4.8028 -1.4983 0.0021 7 8 4.7038 -2.7072 -0.0951 8 7 6.0193 -0.9283 0.1109 9 6 7.2135 -1.7682 0.2317 10 1 7.0713 -2.7678 -0.1788 11 6 8.5014 -1.0811 -0.2521 12 6 8.6639 -0.5509 1.1823 13 1 8.1730 0.4075 1.3518 14 7 10.0474 -0.5745 1.6634 15 6 10.4365 0.2677 2.6707 16 1 9.7233 0.9490 3.1106 17 6 11.7473 0.2450 3.1270 18 7 12.6163 -0.5856 2.5911 19 14 12.2778 1.3933 4.5015 20 1 13.7153 1.1739 4.8027 21 1 12.0696 2.8014 4.0782 22 1 11.4702 1.1171 5.7167 23 6 7.8312 -1.7593 1.6420 24 7 2.2864 -1.0961 0.0005 25 6 1.8311 -2.4885 0.0016 26 1 -0.3634 0.0005 1.0277 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5134 29 1 4.3977 1.3722 0.0111 30 1 6.1040 0.0380 0.1090 31 1 8.3277 -0.2978 -0.9900 32 1 9.2841 -1.7784 -0.5511 33 1 10.6879 -1.1865 1.2685 34 1 12.3407 -1.1821 1.8776 35 1 8.4295 -2.6434 1.8622 36 1 7.1172 -1.5228 2.4309 37 1 1.6885 -2.8233 1.0291 38 1 0.8874 -2.5626 -0.5390 39 1 2.5785 -3.1156 -0.4845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020511668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:14 Heat of formation + Delta-G solvation = 32.573990 kcal Electronic energy + Delta-G solvation = -21072.040678 eV Core-core repulsion = 17822.701690 eV Total energy + Delta-G solvation = -3249.338987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.34410 -41.08788 -39.28039 -36.18101 -35.25072 -34.27396 -32.80020 -31.53576 -28.82205 -27.79377 -26.65715 -26.12699 -24.57351 -23.70505 -21.87759 -20.90814 -20.37675 -19.51288 -18.77892 -17.53844 -17.26324 -16.85070 -16.81494 -16.07914 -15.78449 -15.56372 -15.33891 -14.93460 -14.62670 -14.22402 -14.16761 -13.81718 -13.72482 -13.44196 -13.31189 -13.27750 -13.11375 -12.65122 -12.44391 -11.90280 -11.85344 -11.66351 -11.51295 -11.10536 -11.01120 -10.85320 -10.79361 -10.21512 -9.53997 -9.10192 -8.38843 -5.33065 0.17565 1.36910 1.59349 1.68779 1.69389 1.85066 2.17431 2.22539 2.72190 3.34992 3.37896 3.55524 3.60198 3.72775 3.79048 3.84804 3.91088 4.18124 4.21375 4.26747 4.32052 4.52446 4.58947 4.69137 4.72594 4.80117 4.81849 5.02473 5.03061 5.07697 5.12869 5.14175 5.40798 5.54886 5.62538 6.02461 6.35681 6.50278 6.81725 7.02152 7.09554 8.00013 8.11309 9.13060 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.003238 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.259616 B = 8646.517612 C = 9216.864150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.231 3.769 3 N -0.527 5.527 4 C 0.043 3.957 5 C -0.114 4.114 6 C 0.599 3.401 7 O -0.579 6.579 8 N -0.685 5.685 9 C 0.140 3.860 10 H 0.098 0.902 11 C -0.142 4.142 12 C 0.156 3.844 13 H 0.080 0.920 14 N -0.739 5.739 15 C -0.334 4.334 16 H 0.069 0.931 17 C -0.105 4.105 18 N -0.977 5.977 19 Si 1.126 2.874 20 H -0.295 1.295 21 H -0.275 1.275 22 H -0.280 1.280 23 C -0.172 4.172 24 N -0.430 5.430 25 C 0.061 3.939 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.198 0.802 30 H 0.414 0.586 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.361 0.639 34 H 0.245 0.755 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.133 -0.580 -7.640 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.031 4.031 3 N -0.246 5.246 4 C -0.112 4.112 5 C -0.230 4.230 6 C 0.387 3.613 7 O -0.460 6.460 8 N -0.335 5.335 9 C 0.034 3.966 10 H 0.116 0.884 11 C -0.181 4.181 12 C 0.046 3.954 13 H 0.098 0.902 14 N -0.379 5.379 15 C -0.465 4.465 16 H 0.087 0.913 17 C -0.296 4.296 18 N -0.625 5.625 19 Si 0.951 3.049 20 H -0.221 1.221 21 H -0.201 1.201 22 H -0.206 1.206 23 C -0.214 4.214 24 N -0.111 5.111 25 C -0.080 4.080 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.215 0.785 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.194 0.806 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.417 -0.190 -6.641 26.271 hybrid contribution -0.215 -1.326 -0.940 1.639 sum -25.632 -1.516 -7.581 26.772 Atomic orbital electron populations 1.20519 0.81114 1.05927 1.05318 1.24338 0.97617 0.80497 1.00696 1.70154 1.02561 1.29305 1.22583 1.23052 0.95893 0.91333 1.00908 1.20620 0.85695 0.95058 1.21661 1.16926 0.82627 0.86297 0.75458 1.90747 1.87168 1.15488 1.52598 1.45196 1.04351 1.10871 1.73096 1.21554 0.83334 0.95114 0.96631 0.88377 1.23677 0.95910 1.00782 0.97754 1.21924 0.84335 0.96037 0.93096 0.90179 1.42597 1.07732 1.45206 1.42335 1.20449 0.97188 1.15953 1.12944 0.91350 1.27175 0.92745 1.03654 1.06063 1.70995 1.36705 1.25864 1.28904 0.82645 0.75286 0.73941 0.73025 1.22071 1.20118 1.20611 1.24193 0.99384 1.01266 0.96569 1.45310 1.04621 1.09482 1.51654 1.22479 1.03189 0.77261 1.05075 0.88241 0.88121 0.87980 0.78542 0.74827 0.89304 0.89076 0.80620 0.94480 0.90897 0.92680 0.89444 0.85877 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.18 71.24 0.73 0.13 16 2 C 0.23 4.36 7.88 138.20 1.09 5.45 16 3 N -0.53 -12.55 11.20 -187.40 -2.10 -14.65 16 4 C 0.04 0.98 11.37 84.10 0.96 1.94 16 5 C -0.11 -2.80 6.91 40.01 0.28 -2.52 16 6 C 0.60 16.51 7.78 86.47 0.67 17.19 16 7 O -0.58 -18.98 14.41 -4.32 -0.06 -19.04 16 8 N -0.68 -17.08 5.25 -443.61 -2.33 -19.40 16 9 C 0.14 3.99 4.36 45.58 0.20 4.19 16 10 H 0.10 2.93 7.41 -2.39 -0.02 2.91 16 11 C -0.14 -4.18 7.58 31.12 0.24 -3.94 16 12 C 0.16 5.83 4.34 45.52 0.20 6.03 16 13 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 14 N -0.74 -36.43 5.41 -320.44 -1.73 -38.16 16 15 C -0.33 -18.54 9.97 84.03 0.84 -17.70 16 16 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 17 C -0.11 -6.09 5.50 84.86 0.47 -5.62 16 18 N -0.98 -61.09 13.70 21.65 0.30 -60.79 16 19 Si 1.13 51.76 29.92 68.60 2.05 53.82 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 C -0.17 -5.95 7.69 31.18 0.24 -5.71 16 24 N -0.43 -8.84 3.17 -524.93 -1.67 -10.50 16 25 C 0.06 0.88 10.55 127.77 1.35 2.23 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.34 7.07 -2.39 -0.02 0.32 16 29 H 0.20 3.41 7.46 -2.91 -0.02 3.39 16 30 H 0.41 8.46 7.65 -92.71 -0.71 7.75 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 32 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 33 H 0.36 18.62 6.74 -92.71 -0.62 17.99 16 34 H 0.24 15.19 6.77 -92.71 -0.63 14.56 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 0.80 7.07 -2.38 -0.02 0.78 16 39 H 0.09 1.68 6.30 -2.39 -0.02 1.67 16 Total: -1.00 -76.21 327.86 1.60 -74.61 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.11 Total: 32.47 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 7.24 Total: 1.65 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -7.53 Total: -143.50 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.06 Total: -19.04 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.82 kcal Total: -76.21 1.60 -74.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020511668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.185 kcal (2) G-P(sol) polarization free energy of solvation -76.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds