Wall clock time and date at job start Mon Mar 30 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30861 * 125.42242 * 2 1 4 4 C 1.33317 * 109.68563 * 179.78403 * 3 2 1 5 5 C 1.50706 * 126.10569 * 180.27337 * 4 3 2 6 6 C 1.36661 * 107.78726 * 0.38399 * 4 3 2 7 7 C 1.46768 * 126.84362 * 179.89841 * 6 4 3 8 8 O 1.21681 * 119.99889 * 359.70362 * 7 6 4 9 9 N 1.34769 * 120.00028 * 179.70633 * 7 6 4 10 10 C 1.46497 * 120.00274 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.90477 * 336.24972 * 10 9 7 12 12 C 1.53779 * 113.61581 * 107.50145 * 10 9 7 13 13 C 1.53779 * 87.08402 * 139.98450 * 12 10 9 14 14 H 1.09000 * 113.69407 * 220.01236 * 13 12 10 15 15 N 1.46499 * 113.61746 * 89.11614 * 13 12 10 16 16 C 1.36935 * 120.00065 * 107.50394 * 15 13 12 17 17 H 1.07999 * 119.99835 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00004 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47169 * 120.00060 * 20 18 16 23 23 H 1.48493 * 109.47186 * 239.99987 * 20 18 16 24 24 C 1.53784 * 113.61569 * 204.99925 * 10 9 7 25 25 N 1.34500 * 125.41571 * 180.02562 * 2 1 3 26 26 H 0.96997 * 126.47410 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.46849 * 269.97543 * 1 2 3 28 28 H 1.09000 * 109.46867 * 29.97444 * 1 2 3 29 29 H 1.08995 * 109.46895 * 149.97328 * 1 2 3 30 30 H 1.08995 * 109.46989 * 270.12906 * 5 4 3 31 31 H 1.08997 * 109.47016 * 30.12597 * 5 4 3 32 32 H 1.08998 * 109.46865 * 150.12713 * 5 4 3 33 33 H 0.97009 * 120.00192 * 359.97438 * 9 7 6 34 34 H 1.09006 * 113.61307 * 25.43652 * 12 10 9 35 35 H 1.09007 * 113.61642 * 254.53409 * 12 10 9 36 36 H 0.97001 * 119.99349 * 287.50724 * 15 13 12 37 37 H 0.96994 * 119.99603 * 179.97438 * 19 18 16 38 38 H 1.09004 * 113.61451 * 105.47149 * 24 10 9 39 39 H 1.08994 * 113.61477 * 334.56451 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0664 0.0000 4 6 3.5487 0.7048 0.0047 5 6 4.7337 1.6359 0.0121 6 6 3.5976 -0.6609 -0.0009 7 6 4.8029 -1.4984 -0.0006 8 8 5.9038 -0.9801 -0.0005 9 7 4.6903 -2.8414 -0.0006 10 6 5.8933 -3.6773 -0.0010 11 1 6.7661 -3.1647 -0.4056 12 6 6.1578 -4.3769 1.3427 13 6 6.5726 -5.6133 0.5279 14 1 6.2266 -6.5550 0.9540 15 7 7.9951 -5.6357 0.1784 16 6 8.8403 -6.5125 0.8046 17 1 8.4582 -7.1872 1.5564 18 6 10.1883 -6.5333 0.4739 19 7 10.6540 -5.7107 -0.4421 20 14 11.3413 -7.7289 1.3286 21 1 10.5757 -8.5391 2.3097 22 1 11.9592 -8.6271 0.3204 23 1 12.4054 -6.9712 2.0347 24 6 5.6704 -5.0776 -0.5964 25 7 2.2864 -1.0961 -0.0005 26 1 1.9849 -2.0181 -0.0006 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 5.0224 1.8647 -1.0137 31 1 4.4679 2.5580 0.5290 32 1 5.5676 1.1584 0.5265 33 1 3.8126 -3.2545 -0.0004 34 1 5.2588 -4.5291 1.9401 35 1 6.9755 -3.9345 1.9119 36 1 8.3383 -5.0294 -0.4965 37 1 11.5959 -5.7250 -0.6729 38 1 6.0947 -5.2009 -1.5929 39 1 4.6383 -5.4213 -0.5292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020600199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:56 Heat of formation + Delta-G solvation = 45.160740 kcal Electronic energy + Delta-G solvation = -21008.363999 eV Core-core repulsion = 17759.570815 eV Total energy + Delta-G solvation = -3248.793185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.47161 -39.67108 -37.92133 -34.36231 -33.51221 -32.80627 -32.08475 -29.75529 -29.34127 -26.84275 -25.18061 -24.41866 -23.06029 -21.79620 -21.08690 -20.10063 -19.03080 -18.19053 -17.40006 -16.09947 -16.03370 -15.96011 -14.92668 -14.54884 -14.46385 -14.12672 -13.91505 -13.34810 -13.25636 -13.12538 -12.77662 -12.74562 -12.58678 -12.21453 -12.12327 -12.04997 -11.68883 -10.91548 -10.83406 -10.55010 -10.33541 -10.19370 -10.16579 -9.98670 -9.76785 -9.65696 -8.97190 -8.87881 -8.48475 -7.04127 -5.81910 -3.12388 1.13267 2.58672 2.60525 3.18742 3.28763 3.41181 3.46465 3.49170 3.99339 4.53519 4.54157 4.77279 4.89317 4.99019 5.05449 5.16163 5.17901 5.32408 5.42066 5.43083 5.53900 5.76450 5.82252 5.88273 5.94732 5.99733 6.00952 6.13919 6.29069 6.47655 6.53574 6.65432 6.71449 6.93161 6.97771 7.47415 7.67041 7.74400 8.20169 8.36051 9.46999 10.02506 10.36492 11.40232 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037025 B = 0.003156 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.055315 B = 8868.946166 C = 9378.912124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.236 3.764 3 N -0.495 5.495 4 C 0.097 3.903 5 C -0.078 4.078 6 C -0.090 4.090 7 C 0.590 3.410 8 O -0.517 6.517 9 N -0.717 5.717 10 C 0.126 3.874 11 H 0.117 0.883 12 C -0.184 4.184 13 C 0.173 3.827 14 H 0.069 0.931 15 N -0.705 5.705 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.165 4.165 25 N -0.553 5.553 26 H 0.420 0.580 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.388 0.612 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.074 0.926 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.159 8.650 0.224 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.028 4.028 3 N -0.217 5.217 4 C -0.037 4.037 5 C -0.136 4.136 6 C -0.205 4.205 7 C 0.376 3.624 8 O -0.393 6.393 9 N -0.366 5.366 10 C 0.023 3.977 11 H 0.135 0.865 12 C -0.227 4.227 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.344 5.344 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.205 4.205 25 N -0.159 5.159 26 H 0.258 0.742 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.221 0.779 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.439 9.675 0.306 23.523 hybrid contribution 0.327 -1.916 0.221 1.956 sum -21.112 7.760 0.527 22.499 Atomic orbital electron populations 1.20292 0.84261 1.04506 1.04022 1.23393 0.95781 0.81555 1.02027 1.70089 1.01737 1.28269 1.21606 1.21095 0.93079 0.90409 0.99103 1.20312 0.93077 0.97028 1.03156 1.21068 0.83753 0.95612 1.20115 1.16872 0.86861 0.81827 0.76842 1.90855 1.25712 1.72904 1.49800 1.46035 1.09922 1.05526 1.75109 1.22716 0.87416 0.88971 0.98600 0.86483 1.24336 1.00935 1.00747 0.96641 1.20895 0.85769 0.94910 0.92496 0.91322 1.42207 1.01335 1.44107 1.46716 1.19303 0.89356 1.12592 1.16480 0.90874 1.24796 0.97108 0.99596 0.99243 1.69678 1.14042 1.39734 1.34188 0.86090 0.81014 0.80255 0.78634 1.20490 1.21795 1.21752 1.23914 1.00426 0.94944 1.01188 1.43163 1.06090 1.10035 1.56615 0.74180 0.89621 0.88691 0.90433 0.90682 0.91139 0.89045 0.77886 0.91392 0.90834 0.77933 0.93362 0.90710 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.24 2.24 8.12 -155.61 -1.26 0.98 16 3 N -0.50 -6.38 11.20 -6.84 -0.08 -6.46 16 4 C 0.10 1.34 7.15 -82.51 -0.59 0.75 16 5 C -0.08 -0.99 9.88 36.01 0.36 -0.64 16 6 C -0.09 -1.17 7.08 -82.14 -0.58 -1.75 16 7 C 0.59 8.89 7.79 -12.82 -0.10 8.79 16 8 O -0.52 -9.76 14.42 5.21 0.08 -9.68 16 9 N -0.72 -9.26 5.35 -54.30 -0.29 -9.55 16 10 C 0.13 2.03 4.12 -67.12 -0.28 1.76 16 11 H 0.12 2.28 7.47 -51.93 -0.39 1.90 16 12 C -0.18 -3.16 7.68 -25.92 -0.20 -3.36 16 13 C 0.17 3.28 4.56 -67.12 -0.31 2.98 16 14 H 0.07 1.28 8.10 -51.93 -0.42 0.85 16 15 N -0.71 -17.41 5.31 -52.64 -0.28 -17.69 16 16 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.16 -2.50 7.58 -25.91 -0.20 -2.70 16 25 N -0.55 -4.95 6.07 -7.01 -0.04 -4.99 16 26 H 0.42 2.22 8.32 -40.82 -0.34 1.88 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.29 6.49 -51.93 -0.34 0.95 16 33 H 0.39 3.59 7.97 -40.82 -0.33 3.26 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.39 10.22 7.90 -40.82 -0.32 9.90 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -34.40 331.83 -8.42 -42.82 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.48 Total: 11.14 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.02 Total: -0.47 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.04 Total: -66.02 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.40 -8.42 -42.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020600199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.978 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds