Wall clock time and date at job start Mon Mar 30 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30861 * 125.42242 * 2 1 4 4 C 1.33317 * 109.68563 * 179.78403 * 3 2 1 5 5 C 1.50706 * 126.10569 * 180.27337 * 4 3 2 6 6 C 1.36661 * 107.78726 * 0.38399 * 4 3 2 7 7 C 1.46768 * 126.84362 * 179.89841 * 6 4 3 8 8 O 1.21681 * 119.99889 * 359.70362 * 7 6 4 9 9 N 1.34769 * 120.00028 * 179.70633 * 7 6 4 10 10 C 1.46497 * 120.00274 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.90477 * 336.24972 * 10 9 7 12 12 C 1.53779 * 113.61581 * 107.50145 * 10 9 7 13 13 C 1.53779 * 87.08402 * 139.98450 * 12 10 9 14 14 H 1.09000 * 113.69407 * 220.01236 * 13 12 10 15 15 N 1.46499 * 113.61746 * 89.11614 * 13 12 10 16 16 C 1.36935 * 120.00065 * 107.50394 * 15 13 12 17 17 H 1.07999 * 119.99835 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00004 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47169 * 120.00060 * 20 18 16 23 23 H 1.48493 * 109.47186 * 239.99987 * 20 18 16 24 24 C 1.53784 * 113.61569 * 204.99925 * 10 9 7 25 25 N 1.34500 * 125.41571 * 180.02562 * 2 1 3 26 26 H 0.96997 * 126.47410 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.46849 * 269.97543 * 1 2 3 28 28 H 1.09000 * 109.46867 * 29.97444 * 1 2 3 29 29 H 1.08995 * 109.46895 * 149.97328 * 1 2 3 30 30 H 1.08995 * 109.46989 * 270.12906 * 5 4 3 31 31 H 1.08997 * 109.47016 * 30.12597 * 5 4 3 32 32 H 1.08998 * 109.46865 * 150.12713 * 5 4 3 33 33 H 0.97009 * 120.00192 * 359.97438 * 9 7 6 34 34 H 1.09006 * 113.61307 * 25.43652 * 12 10 9 35 35 H 1.09007 * 113.61642 * 254.53409 * 12 10 9 36 36 H 0.97001 * 119.99349 * 287.50724 * 15 13 12 37 37 H 0.96994 * 119.99603 * 179.97438 * 19 18 16 38 38 H 1.09004 * 113.61451 * 105.47149 * 24 10 9 39 39 H 1.08994 * 113.61477 * 334.56451 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0664 0.0000 4 6 3.5487 0.7048 0.0047 5 6 4.7337 1.6359 0.0121 6 6 3.5976 -0.6609 -0.0009 7 6 4.8029 -1.4984 -0.0006 8 8 5.9038 -0.9801 -0.0005 9 7 4.6903 -2.8414 -0.0006 10 6 5.8933 -3.6773 -0.0010 11 1 6.7661 -3.1647 -0.4056 12 6 6.1578 -4.3769 1.3427 13 6 6.5726 -5.6133 0.5279 14 1 6.2266 -6.5550 0.9540 15 7 7.9951 -5.6357 0.1784 16 6 8.8403 -6.5125 0.8046 17 1 8.4582 -7.1872 1.5564 18 6 10.1883 -6.5333 0.4739 19 7 10.6540 -5.7107 -0.4421 20 14 11.3413 -7.7289 1.3286 21 1 10.5757 -8.5391 2.3097 22 1 11.9592 -8.6271 0.3204 23 1 12.4054 -6.9712 2.0347 24 6 5.6704 -5.0776 -0.5964 25 7 2.2864 -1.0961 -0.0005 26 1 1.9849 -2.0181 -0.0006 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 5.0224 1.8647 -1.0137 31 1 4.4679 2.5580 0.5290 32 1 5.5676 1.1584 0.5265 33 1 3.8126 -3.2545 -0.0004 34 1 5.2588 -4.5291 1.9401 35 1 6.9755 -3.9345 1.9119 36 1 8.3383 -5.0294 -0.4965 37 1 11.5959 -5.7250 -0.6729 38 1 6.0947 -5.2009 -1.5929 39 1 4.6383 -5.4213 -0.5292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020600199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:56 Heat of formation + Delta-G solvation = 19.205238 kcal Electronic energy + Delta-G solvation = -21009.489514 eV Core-core repulsion = 17759.570815 eV Total energy + Delta-G solvation = -3249.918700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.33977 -40.95615 -39.30236 -35.86104 -34.79732 -34.05048 -33.02731 -31.63262 -30.08626 -27.86159 -26.55055 -26.15085 -24.62501 -22.82875 -22.03013 -21.18813 -20.24337 -19.43764 -19.22849 -17.43760 -17.00920 -16.91556 -16.66861 -15.88690 -15.66494 -15.54421 -15.01895 -14.89391 -14.38625 -14.08579 -13.98159 -13.67215 -13.40335 -13.34336 -13.27586 -13.21677 -13.05093 -12.84967 -12.61814 -12.12922 -11.86693 -11.74884 -11.53089 -11.37228 -11.05554 -10.96704 -10.85465 -10.15613 -9.42255 -9.04398 -7.96764 -5.26672 0.17509 1.46967 1.48240 1.58156 1.72212 1.77954 2.11296 2.18072 2.54499 3.29667 3.35307 3.59580 3.74131 3.80357 3.86735 3.98083 4.11778 4.27545 4.32573 4.53073 4.67768 4.73158 4.75701 4.78334 4.79274 4.94723 4.98522 5.01789 5.11772 5.15534 5.20739 5.27337 5.49030 5.52091 5.62759 6.25511 6.28822 6.44098 6.87599 7.09413 7.30483 8.06486 8.27340 9.26919 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037025 B = 0.003156 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.055315 B = 8868.946166 C = 9378.912124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.254 3.746 3 N -0.529 5.529 4 C 0.079 3.921 5 C -0.076 4.076 6 C -0.106 4.106 7 C 0.589 3.411 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.132 3.868 11 H 0.074 0.926 12 C -0.171 4.171 13 C 0.151 3.849 14 H 0.080 0.920 15 N -0.724 5.724 16 C -0.242 4.242 17 H 0.083 0.917 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.297 1.297 24 C -0.137 4.137 25 N -0.536 5.536 26 H 0.439 0.561 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.106 0.894 35 H 0.035 0.965 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.062 0.938 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.935 7.359 0.880 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.011 4.011 3 N -0.251 5.251 4 C -0.056 4.056 5 C -0.134 4.134 6 C -0.222 4.222 7 C 0.376 3.624 8 O -0.445 6.445 9 N -0.347 5.347 10 C 0.027 3.973 11 H 0.093 0.907 12 C -0.213 4.213 13 C 0.041 3.959 14 H 0.098 0.902 15 N -0.361 5.361 16 C -0.374 4.374 17 H 0.101 0.899 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.225 1.225 24 C -0.177 4.177 25 N -0.143 5.143 26 H 0.281 0.719 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.203 0.797 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -25.331 8.322 0.988 26.681 hybrid contribution 1.315 -1.455 0.046 1.962 sum -24.015 6.867 1.034 24.999 Atomic orbital electron populations 1.20565 0.80544 1.06202 1.05631 1.24321 0.97459 0.80723 0.98562 1.70105 1.01467 1.30068 1.23485 1.21298 0.93803 0.91044 0.99425 1.20242 0.92624 0.97396 1.03089 1.20605 0.84526 0.95034 1.21998 1.17158 0.86929 0.82340 0.75947 1.90839 1.27791 1.73848 1.52011 1.45693 1.10076 1.04653 1.74307 1.22285 0.87416 0.89593 0.97974 0.90747 1.24201 1.01122 0.99207 0.96775 1.21238 0.83586 0.96145 0.94974 0.90157 1.42417 1.03714 1.43535 1.46470 1.19744 0.89899 1.12060 1.15650 0.89917 1.25644 0.98975 1.01878 1.00636 1.69845 1.13865 1.42081 1.36411 0.85041 0.78731 0.78116 0.77674 1.18559 1.21990 1.22466 1.23755 1.02002 0.92969 0.98935 1.43021 1.04342 1.11165 1.55816 0.71859 0.87862 0.88405 0.87331 0.90590 0.89993 0.91018 0.75133 0.87616 0.94580 0.79651 0.94048 0.91909 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.25 4.07 8.12 138.20 1.12 5.19 16 3 N -0.53 -12.89 11.20 -175.56 -1.97 -14.86 16 4 C 0.08 2.16 7.15 41.97 0.30 2.46 16 5 C -0.08 -2.02 9.88 71.24 0.70 -1.31 16 6 C -0.11 -2.63 7.08 40.01 0.28 -2.35 16 7 C 0.59 17.65 7.79 86.47 0.67 18.32 16 8 O -0.57 -22.43 14.42 -4.29 -0.06 -22.49 16 9 N -0.70 -16.74 5.35 -443.93 -2.38 -19.12 16 10 C 0.13 4.17 4.12 45.52 0.19 4.36 16 11 H 0.07 3.06 7.47 -2.39 -0.02 3.04 16 12 C -0.17 -5.67 7.68 31.12 0.24 -5.43 16 13 C 0.15 5.56 4.56 45.52 0.21 5.77 16 14 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 15 N -0.72 -36.35 5.31 -320.44 -1.70 -38.05 16 16 C -0.24 -13.34 9.97 84.03 0.84 -12.51 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 20 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 C -0.14 -3.83 7.58 31.12 0.24 -3.60 16 25 N -0.54 -7.97 6.07 -176.10 -1.07 -9.04 16 26 H 0.44 2.74 8.32 -92.71 -0.77 1.97 16 27 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 2.17 6.49 -2.39 -0.02 2.16 16 33 H 0.41 5.98 7.97 -92.70 -0.74 5.25 16 34 H 0.11 2.70 8.14 -2.38 -0.02 2.69 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.37 20.52 7.90 -92.71 -0.73 19.79 16 37 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.13 2.32 8.12 -2.39 -0.02 2.30 16 Total: -1.00 -79.41 331.83 0.00 -79.42 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -1.14 Total: 29.03 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.00 Total: 7.14 kcal Atomic # 7 Polarization: -134.65 SS G_CDS: -6.83 Total: -141.48 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -79.41 0.00 -79.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020600199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.621 kcal (2) G-P(sol) polarization free energy of solvation -79.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds