Wall clock time and date at job start Tue Mar 31 2020 00:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39870 * 125.90317 * 2 1 4 4 C 1.35315 * 107.92072 * 179.97438 * 3 2 1 5 5 N 1.34939 * 107.74580 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03492 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47417 * 124.99718 * 6 5 4 8 8 O 1.21279 * 119.99648 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00063 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99975 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84519 * 334.66184 * 10 9 7 12 12 C 1.53773 * 113.61894 * 105.86054 * 10 9 7 13 13 C 1.54055 * 86.98400 * 89.16322 * 12 10 9 14 14 H 1.09001 * 113.61442 * 270.88335 * 13 12 10 15 15 N 1.46500 * 113.69782 * 139.99203 * 13 12 10 16 16 C 1.36935 * 119.99941 * 107.46332 * 15 13 12 17 17 H 1.07998 * 120.00601 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99868 * 179.97438 * 16 15 13 19 19 N 1.31627 * 119.99997 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46559 * 90.00612 * 20 18 16 22 22 H 1.48501 * 109.47312 * 210.00409 * 20 18 16 23 23 H 1.48496 * 109.46849 * 330.00554 * 20 18 16 24 24 C 1.53775 * 87.07809 * 25.43368 * 13 12 10 25 25 N 1.30839 * 125.89375 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47372 * 89.99212 * 1 2 3 27 27 H 1.09003 * 109.47264 * 209.99663 * 1 2 3 28 28 H 1.08999 * 109.46975 * 329.99809 * 1 2 3 29 29 H 1.07999 * 126.03520 * 0.27153 * 3 2 1 30 30 H 1.07999 * 126.12207 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47292 * 244.99548 * 6 5 4 32 32 H 1.09004 * 109.47390 * 4.99847 * 6 5 4 33 33 H 0.96998 * 120.00034 * 359.97438 * 9 7 6 34 34 H 1.09002 * 113.61789 * 203.65990 * 12 10 9 35 35 H 1.08998 * 113.61393 * 334.57469 * 12 10 9 36 36 H 0.96999 * 120.00042 * 287.47362 * 15 13 12 37 37 H 0.96997 * 120.00037 * 179.97438 * 19 18 16 38 38 H 1.09001 * 113.61327 * 220.02508 * 24 13 12 39 39 H 1.09004 * 113.69330 * 89.13033 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0006 5 7 3.6087 -0.6342 0.0004 6 6 4.7899 -1.5009 0.0003 7 6 4.7127 -2.4553 1.1640 8 8 3.7648 -2.4151 1.9194 9 7 5.6972 -3.3535 1.3653 10 6 5.6219 -4.2816 2.4963 11 1 5.0159 -3.8995 3.3178 12 6 5.2695 -5.7219 2.0889 13 6 6.7828 -5.9596 1.9258 14 1 7.1562 -5.7278 0.9283 15 7 7.2289 -7.2682 2.4103 16 6 7.5917 -8.2414 1.5179 17 1 7.5495 -8.0442 0.4569 18 6 8.0149 -9.4812 1.9770 19 7 8.0669 -9.7215 3.2701 20 14 8.5093 -10.8090 0.7596 21 1 9.9613 -10.6982 0.4690 22 1 8.2212 -12.1451 1.3404 23 1 7.7382 -10.6393 -0.4981 24 6 6.9909 -4.8233 2.9408 25 7 2.2741 -1.0599 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9924 2.1597 0.0041 30 1 4.4892 1.3484 0.0011 31 1 4.8259 -2.0659 -0.9312 32 1 5.6885 -0.8905 0.0900 33 1 6.4552 -3.3858 0.7610 34 1 4.8201 -6.3055 2.8924 35 1 4.7126 -5.7874 1.1542 36 1 7.2671 -7.4454 3.3632 37 1 8.3623 -10.5879 3.5909 38 1 7.8227 -4.1637 2.6935 39 1 7.0115 -5.1602 3.9773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020601288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:50 Heat of formation + Delta-G solvation = 79.753883 kcal Electronic energy + Delta-G solvation = -20689.778402 eV Core-core repulsion = 17442.485288 eV Total energy + Delta-G solvation = -3247.293114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.36400 -39.90283 -37.97540 -34.09872 -34.04676 -32.66090 -30.65447 -29.95258 -29.44431 -26.40905 -25.16896 -24.45246 -22.36038 -21.44443 -20.97049 -19.83160 -19.02649 -17.53555 -17.21682 -17.04284 -15.90508 -15.44952 -14.96695 -14.82797 -14.35198 -14.05948 -13.86955 -13.68040 -13.49932 -13.18207 -12.82164 -12.69647 -12.44709 -12.19613 -12.00655 -11.89125 -11.67135 -10.92964 -10.82301 -10.60846 -10.36887 -10.25829 -10.05273 -9.94002 -9.60848 -9.26489 -8.95824 -8.84803 -8.68674 -7.01769 -5.83012 -3.12308 1.73436 2.21323 2.49321 2.70364 3.10790 3.39540 3.45016 3.46845 4.25953 4.51524 4.54823 4.59707 4.73038 4.79737 4.97856 5.11360 5.17748 5.39975 5.46052 5.46658 5.49619 5.67281 5.71296 5.82746 5.86754 5.95466 6.07655 6.20175 6.28258 6.43239 6.55627 6.59104 6.65336 6.79492 7.03558 7.46609 7.64067 7.65159 8.16047 8.35253 9.46533 10.03583 10.37822 11.39255 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037577 B = 0.002774 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.948239 B =10091.772912 C =10232.317972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.061 3.939 3 C -0.269 4.269 4 C 0.052 3.948 5 N -0.363 5.363 6 C 0.115 3.885 7 C 0.499 3.501 8 O -0.512 6.512 9 N -0.705 5.705 10 C 0.118 3.882 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.167 3.833 14 H 0.074 0.926 15 N -0.712 5.712 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.158 4.158 25 N -0.262 5.262 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.401 0.599 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.979 22.844 -7.247 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.299 4.299 4 C -0.093 4.093 5 N -0.145 5.145 6 C -0.010 4.010 7 C 0.282 3.718 8 O -0.386 6.386 9 N -0.357 5.357 10 C 0.012 3.988 11 H 0.112 0.888 12 C -0.219 4.219 13 C 0.055 3.945 14 H 0.092 0.908 15 N -0.350 5.350 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.198 4.198 25 N -0.084 5.084 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.190 0.810 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.432 21.358 -6.825 23.622 hybrid contribution 0.844 0.017 -0.571 1.019 sum -6.589 21.375 -7.396 23.558 Atomic orbital electron populations 1.20143 0.86813 1.03268 1.02687 1.22417 0.97070 0.90869 1.00257 1.21349 0.91627 0.99675 1.17242 1.22504 0.99819 0.84496 1.02484 1.47984 1.04982 1.04158 1.57333 1.21493 0.85998 0.93774 0.99760 1.20446 0.83196 0.81731 0.86424 1.90788 1.31700 1.70110 1.45965 1.45625 1.23922 1.35330 1.30846 1.21820 0.99057 0.89394 0.88505 0.88787 1.24354 1.01804 0.94076 1.01624 1.21665 0.91489 0.85917 0.95424 0.90844 1.42400 1.77382 1.08626 1.06567 1.19284 1.36740 0.92212 0.89490 0.91112 1.24782 1.02114 0.97997 0.95952 1.69660 1.53356 1.23259 1.11650 0.86182 0.78276 0.81541 0.80137 1.21661 1.21705 1.20713 1.23855 0.94971 0.99019 1.01943 1.77502 0.85871 1.22322 1.22729 0.90753 0.90903 0.90623 0.83624 0.80999 0.86747 0.85769 0.76494 0.89577 0.92367 0.77995 0.93388 0.91732 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.45 36.01 0.38 -0.25 16 2 C 0.06 0.76 7.22 -82.40 -0.59 0.16 16 3 C -0.27 -2.74 10.74 -40.01 -0.43 -3.17 16 4 C 0.05 0.49 11.45 -17.23 -0.20 0.29 16 5 N -0.36 -4.34 3.40 -62.54 -0.21 -4.55 16 6 C 0.12 1.04 6.99 -5.19 -0.04 1.00 16 7 C 0.50 6.56 7.86 -10.99 -0.09 6.47 16 8 O -0.51 -9.33 15.33 5.56 0.09 -9.25 16 9 N -0.71 -8.41 5.26 -53.02 -0.28 -8.69 16 10 C 0.12 1.75 4.29 -67.12 -0.29 1.46 16 11 H 0.09 1.52 7.50 -51.93 -0.39 1.13 16 12 C -0.18 -3.11 7.70 -25.78 -0.20 -3.31 16 13 C 0.17 3.13 4.37 -66.98 -0.29 2.84 16 14 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 15 N -0.71 -17.41 5.41 -52.50 -0.28 -17.69 16 16 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 20 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.16 -2.41 7.57 -25.92 -0.20 -2.61 16 25 N -0.26 -3.93 11.64 33.67 0.39 -3.54 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.40 3.56 8.70 -40.82 -0.36 3.21 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.39 10.05 7.93 -40.82 -0.32 9.73 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.47 8.12 -51.93 -0.42 1.04 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -36.33 336.75 -7.39 -43.72 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.68 Total: 9.39 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.19 Total: -4.42 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.34 Total: -61.60 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.33 -7.39 -43.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020601288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.477 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds