Wall clock time and date at job start Tue Mar 31 2020 00:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39870 * 125.90317 * 2 1 4 4 C 1.35315 * 107.92072 * 179.97438 * 3 2 1 5 5 N 1.34939 * 107.74580 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03492 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47417 * 124.99718 * 6 5 4 8 8 O 1.21279 * 119.99648 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00063 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99975 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84519 * 334.66184 * 10 9 7 12 12 C 1.53773 * 113.61894 * 105.86054 * 10 9 7 13 13 C 1.54055 * 86.98400 * 89.16322 * 12 10 9 14 14 H 1.09001 * 113.61442 * 270.88335 * 13 12 10 15 15 N 1.46500 * 113.69782 * 139.99203 * 13 12 10 16 16 C 1.36935 * 119.99941 * 107.46332 * 15 13 12 17 17 H 1.07998 * 120.00601 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99868 * 179.97438 * 16 15 13 19 19 N 1.31627 * 119.99997 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46559 * 90.00612 * 20 18 16 22 22 H 1.48501 * 109.47312 * 210.00409 * 20 18 16 23 23 H 1.48496 * 109.46849 * 330.00554 * 20 18 16 24 24 C 1.53775 * 87.07809 * 25.43368 * 13 12 10 25 25 N 1.30839 * 125.89375 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47372 * 89.99212 * 1 2 3 27 27 H 1.09003 * 109.47264 * 209.99663 * 1 2 3 28 28 H 1.08999 * 109.46975 * 329.99809 * 1 2 3 29 29 H 1.07999 * 126.03520 * 0.27153 * 3 2 1 30 30 H 1.07999 * 126.12207 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47292 * 244.99548 * 6 5 4 32 32 H 1.09004 * 109.47390 * 4.99847 * 6 5 4 33 33 H 0.96998 * 120.00034 * 359.97438 * 9 7 6 34 34 H 1.09002 * 113.61789 * 203.65990 * 12 10 9 35 35 H 1.08998 * 113.61393 * 334.57469 * 12 10 9 36 36 H 0.96999 * 120.00042 * 287.47362 * 15 13 12 37 37 H 0.96997 * 120.00037 * 179.97438 * 19 18 16 38 38 H 1.09001 * 113.61327 * 220.02508 * 24 13 12 39 39 H 1.09004 * 113.69330 * 89.13033 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0006 5 7 3.6087 -0.6342 0.0004 6 6 4.7899 -1.5009 0.0003 7 6 4.7127 -2.4553 1.1640 8 8 3.7648 -2.4151 1.9194 9 7 5.6972 -3.3535 1.3653 10 6 5.6219 -4.2816 2.4963 11 1 5.0159 -3.8995 3.3178 12 6 5.2695 -5.7219 2.0889 13 6 6.7828 -5.9596 1.9258 14 1 7.1562 -5.7278 0.9283 15 7 7.2289 -7.2682 2.4103 16 6 7.5917 -8.2414 1.5179 17 1 7.5495 -8.0442 0.4569 18 6 8.0149 -9.4812 1.9770 19 7 8.0669 -9.7215 3.2701 20 14 8.5093 -10.8090 0.7596 21 1 9.9613 -10.6982 0.4690 22 1 8.2212 -12.1451 1.3404 23 1 7.7382 -10.6393 -0.4981 24 6 6.9909 -4.8233 2.9408 25 7 2.2741 -1.0599 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9924 2.1597 0.0041 30 1 4.4892 1.3484 0.0011 31 1 4.8259 -2.0659 -0.9312 32 1 5.6885 -0.8905 0.0900 33 1 6.4552 -3.3858 0.7610 34 1 4.8201 -6.3055 2.8924 35 1 4.7126 -5.7874 1.1542 36 1 7.2671 -7.4454 3.3632 37 1 8.3623 -10.5879 3.5909 38 1 7.8227 -4.1637 2.6935 39 1 7.0115 -5.1602 3.9773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020601288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:45 Heat of formation + Delta-G solvation = 52.758858 kcal Electronic energy + Delta-G solvation = -20690.948994 eV Core-core repulsion = 17442.485288 eV Total energy + Delta-G solvation = -3248.463706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -42.15048 -41.06346 -39.28728 -35.79424 -34.87251 -34.10310 -31.95608 -31.20520 -30.30517 -27.33531 -26.57558 -26.18118 -23.90657 -22.37654 -21.83284 -20.65624 -20.41309 -19.19488 -18.38320 -18.00669 -17.11898 -16.55164 -16.48795 -15.80363 -15.73578 -15.46453 -15.05211 -14.73411 -14.44738 -14.25515 -13.96474 -13.58345 -13.51095 -13.45188 -13.34562 -12.94683 -12.88011 -12.80725 -12.61626 -12.17741 -11.85403 -11.76425 -11.42512 -11.23942 -11.11547 -10.85443 -10.11939 -10.06939 -9.44534 -9.00408 -7.95929 -5.24614 0.97103 1.47341 1.48737 1.50110 1.52929 1.57081 1.93626 2.15925 2.55770 3.35463 3.55730 3.68449 3.73290 3.82236 3.94265 4.02682 4.12251 4.18582 4.30712 4.31456 4.46220 4.69743 4.82373 4.83190 4.88302 4.88926 4.96319 5.04937 5.10926 5.17914 5.22585 5.25997 5.49778 5.67084 5.79863 6.14154 6.26142 6.52988 6.85956 7.20441 7.32277 8.08907 8.30838 9.27399 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037577 B = 0.002774 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.948239 B =10091.772912 C =10232.317972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.043 3.957 3 C -0.286 4.286 4 C 0.060 3.940 5 N -0.375 5.375 6 C 0.117 3.883 7 C 0.496 3.504 8 O -0.569 6.569 9 N -0.692 5.692 10 C 0.137 3.863 11 H 0.082 0.918 12 C -0.177 4.177 13 C 0.156 3.844 14 H 0.088 0.912 15 N -0.728 5.728 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.270 1.270 24 C -0.139 4.139 25 N -0.328 5.328 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.219 0.781 31 H 0.135 0.865 32 H 0.178 0.822 33 H 0.419 0.581 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.094 0.906 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 25.288 -9.111 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C -0.315 4.315 4 C -0.085 4.085 5 N -0.157 5.157 6 C -0.007 4.007 7 C 0.282 3.718 8 O -0.446 6.446 9 N -0.345 5.345 10 C 0.030 3.970 11 H 0.100 0.900 12 C -0.219 4.219 13 C 0.046 3.954 14 H 0.106 0.894 15 N -0.365 5.365 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.195 1.195 24 C -0.178 4.178 25 N -0.150 5.150 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.187 0.813 30 H 0.235 0.765 31 H 0.152 0.848 32 H 0.195 0.805 33 H 0.257 0.743 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.205 23.856 -8.753 26.158 hybrid contribution 0.414 -0.644 -0.010 0.766 sum -5.792 23.212 -8.763 25.478 Atomic orbital electron populations 1.20237 0.85489 1.03504 1.03610 1.23009 0.98382 0.91384 0.99565 1.21756 0.91884 1.00272 1.17572 1.23281 1.01201 0.83911 1.00066 1.48231 1.04609 1.05391 1.57509 1.21818 0.87020 0.93814 0.98092 1.21263 0.82001 0.81766 0.86753 1.90775 1.33872 1.71718 1.48284 1.45464 1.24546 1.34299 1.30177 1.21431 0.98225 0.88220 0.89110 0.90030 1.24226 1.00762 0.96230 1.00692 1.22018 0.91736 0.84603 0.97086 0.89390 1.42612 1.77820 1.10352 1.05707 1.19713 1.34764 0.92755 0.90303 0.90244 1.25594 1.03449 1.00415 0.97540 1.69818 1.55401 1.23416 1.13492 0.85153 0.78059 0.78319 0.78311 1.21112 1.22596 1.19465 1.23639 0.96132 0.97545 1.00488 1.77406 0.87866 1.24386 1.25385 0.89436 0.92449 0.88525 0.81292 0.76477 0.84776 0.80494 0.74262 0.91717 0.92966 0.79452 0.94058 0.88790 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.45 71.24 0.74 -0.49 16 2 C 0.04 1.05 7.22 43.10 0.31 1.36 16 3 C -0.29 -5.24 10.74 21.99 0.24 -5.00 16 4 C 0.06 0.95 11.45 83.54 0.96 1.90 16 5 N -0.38 -8.18 3.40 -351.78 -1.20 -9.37 16 6 C 0.12 1.71 6.99 85.63 0.60 2.30 16 7 C 0.50 12.15 7.86 87.66 0.69 12.84 16 8 O -0.57 -20.75 15.33 -3.03 -0.05 -20.79 16 9 N -0.69 -14.80 5.26 -440.04 -2.32 -17.12 16 10 C 0.14 3.91 4.29 45.52 0.20 4.11 16 11 H 0.08 2.62 7.50 -2.39 -0.02 2.61 16 12 C -0.18 -6.26 7.70 31.21 0.24 -6.02 16 13 C 0.16 5.65 4.37 45.61 0.20 5.85 16 14 H 0.09 2.94 8.10 -2.39 -0.02 2.92 16 15 N -0.73 -35.65 5.41 -320.01 -1.73 -37.38 16 16 C -0.24 -13.19 9.97 84.04 0.84 -12.36 16 17 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 20 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C -0.14 -3.99 7.57 31.12 0.24 -3.75 16 25 N -0.33 -9.78 11.64 -47.38 -0.55 -10.33 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.18 0.63 8.07 -2.38 -0.02 0.61 16 33 H 0.42 5.87 8.70 -92.71 -0.81 5.07 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.37 19.86 7.93 -92.71 -0.73 19.12 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 Total: -1.00 -82.51 336.75 1.71 -80.80 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.47 Total: 28.71 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.71 Total: -3.21 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -5.51 Total: -133.09 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -82.51 1.71 -80.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020601288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.557 kcal (2) G-P(sol) polarization free energy of solvation -82.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds