Wall clock time and date at job start Tue Mar 31 2020 00:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35319 * 126.12439 * 2 1 4 4 C 1.39864 * 107.91671 * 179.97438 * 3 2 1 5 5 N 1.30844 * 108.20435 * 359.73494 * 4 3 2 6 6 N 1.34941 * 126.12429 * 179.97438 * 2 1 3 7 7 C 1.46499 * 126.03853 * 0.02562 * 6 2 1 8 8 C 1.50696 * 109.47420 * 89.99441 * 7 6 2 9 9 O 1.21278 * 120.00079 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99845 * 179.97438 * 10 8 7 12 12 H 1.09004 * 112.84608 * 336.20372 * 11 10 8 13 13 C 1.53778 * 113.61013 * 107.50712 * 11 10 8 14 14 C 1.53784 * 87.07731 * 139.98403 * 13 11 10 15 15 H 1.09000 * 113.68807 * 220.00491 * 14 13 11 16 16 N 1.46499 * 113.61633 * 89.11577 * 14 13 11 17 17 C 1.36935 * 119.99938 * 107.49989 * 16 14 13 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 14 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 C 1.53776 * 87.08228 * 334.56321 * 14 13 11 26 26 H 1.09005 * 109.46937 * 270.02950 * 1 2 3 27 27 H 1.09004 * 109.46898 * 30.02139 * 1 2 3 28 28 H 1.08998 * 109.47063 * 150.02670 * 1 2 3 29 29 H 1.07998 * 126.03970 * 359.97438 * 3 2 1 30 30 H 1.07999 * 125.89961 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47100 * 329.99106 * 7 6 2 32 32 H 1.09008 * 109.46896 * 209.99603 * 7 6 2 33 33 H 0.96999 * 120.00555 * 0.02562 * 10 8 7 34 34 H 1.08996 * 113.61870 * 25.43302 * 13 11 10 35 35 H 1.09003 * 113.61168 * 254.52674 * 13 11 10 36 36 H 0.96999 * 119.99984 * 287.49924 * 16 14 13 37 37 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 38 38 H 1.09001 * 113.61142 * 139.97784 * 25 14 13 39 39 H 1.08997 * 113.61750 * 270.88948 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 7 3.6334 -0.6524 0.0067 6 7 2.3026 -1.0900 0.0005 7 6 1.8538 -2.4845 0.0006 8 6 1.7003 -2.9630 -1.4201 9 8 1.9424 -2.2131 -2.3420 10 7 1.2950 -4.2246 -1.6662 11 6 1.1452 -4.6896 -3.0474 12 1 0.9810 -3.8749 -3.7528 13 6 2.2395 -5.6765 -3.4871 14 6 1.1323 -6.4582 -4.2138 15 1 1.2322 -7.5403 -4.1288 16 7 0.9080 -6.0141 -5.5917 17 6 1.3138 -6.7983 -6.6384 18 1 1.8031 -7.7421 -6.4482 19 6 1.1008 -6.3778 -7.9441 20 7 0.5093 -5.2251 -8.1760 21 14 1.6550 -7.4472 -9.3719 22 1 0.9675 -8.7616 -9.3018 23 1 1.3145 -6.7777 -10.6530 24 1 3.1237 -7.6520 -9.2960 25 6 0.1471 -5.8492 -3.2022 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.9740 2.1211 -0.0004 30 1 4.5084 1.2892 0.0011 31 1 0.8952 -2.5577 0.5142 32 1 2.5897 -3.1029 0.5148 33 1 1.1017 -4.8245 -0.9289 34 1 2.6906 -6.2251 -2.6604 35 1 2.9778 -5.2388 -4.1590 36 1 0.4720 -5.1646 -5.7627 37 1 0.3608 -4.9311 -9.0883 38 1 -0.8036 -5.5509 -3.6440 39 1 0.0263 -6.4449 -2.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020653170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:54 Heat of formation + Delta-G solvation = 78.203031 kcal Electronic energy + Delta-G solvation = -21026.522536 eV Core-core repulsion = 17779.162172 eV Total energy + Delta-G solvation = -3247.360364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38435 -39.79443 -38.02563 -34.11928 -33.60120 -32.68025 -32.12036 -29.79605 -27.68483 -27.06003 -25.15928 -24.35032 -22.88917 -21.36811 -20.87487 -19.83144 -18.78912 -17.49176 -17.28719 -16.89842 -15.81928 -15.54174 -14.98706 -14.87960 -14.22706 -14.07927 -13.89462 -13.73130 -13.14345 -13.10056 -12.87165 -12.78472 -12.54261 -12.19955 -12.08492 -11.97787 -11.68599 -10.87908 -10.82424 -10.68096 -10.32507 -10.20398 -10.16166 -9.84272 -9.71528 -9.24009 -8.94215 -8.80030 -8.56260 -7.03197 -5.80728 -3.11184 1.71267 2.26531 2.52150 2.80543 3.25283 3.42757 3.47102 3.48398 4.31838 4.47688 4.54735 4.58521 4.73447 4.88199 5.00678 5.03693 5.19722 5.22920 5.34435 5.44526 5.55586 5.58929 5.65996 5.83941 5.94178 6.03494 6.05123 6.13769 6.30616 6.53328 6.58866 6.66820 6.73531 6.85528 6.98867 7.50747 7.64509 7.67219 8.19279 8.37285 9.47993 10.03730 10.37590 11.41360 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028732 B = 0.003194 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.278056 B = 8764.639091 C = 9058.323617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 C -0.276 4.276 4 C 0.049 3.951 5 N -0.289 5.289 6 N -0.356 5.356 7 C 0.113 3.887 8 C 0.490 3.510 9 O -0.516 6.516 10 N -0.714 5.714 11 C 0.126 3.874 12 H 0.113 0.887 13 C -0.184 4.184 14 C 0.172 3.828 15 H 0.069 0.931 16 N -0.705 5.705 17 C -0.248 4.248 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C -0.163 4.163 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.183 0.817 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 7.039 22.029 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.305 4.305 4 C -0.138 4.138 5 N -0.109 5.109 6 N -0.138 5.138 7 C -0.013 4.013 8 C 0.273 3.727 9 O -0.390 6.390 10 N -0.366 5.366 11 C 0.022 3.978 12 H 0.131 0.869 13 C -0.227 4.227 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.344 5.344 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.203 4.203 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.164 0.836 30 H 0.199 0.801 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.289 6.281 21.172 22.086 hybrid contribution -0.301 0.225 -0.546 0.663 sum -0.590 6.506 20.626 21.635 Atomic orbital electron populations 1.20466 0.87479 1.04295 1.02959 1.21067 0.94629 0.87261 1.00377 1.21186 0.92363 0.98808 1.18140 1.23814 0.98151 0.92153 0.99662 1.77380 0.96140 1.13224 1.24171 1.47914 1.04146 1.04390 1.57368 1.21471 1.03071 0.80475 0.96332 1.20783 0.78028 0.82833 0.91072 1.90810 1.48062 1.54668 1.45496 1.46080 1.68392 1.12410 1.09686 1.22688 0.97868 0.95815 0.81404 0.86913 1.24331 0.99114 0.98849 1.00397 1.20904 0.91906 0.96372 0.84952 0.91282 1.42191 1.70166 1.23426 0.98591 1.19225 1.32258 1.00946 0.85463 0.90952 1.24790 1.01125 0.97300 0.97456 1.69655 1.47441 1.20759 1.19892 0.86230 0.78369 0.79448 0.81892 1.21157 1.21629 1.21158 1.23905 0.99108 0.96907 1.00419 0.90210 0.89414 0.91204 0.83608 0.80054 0.86288 0.85897 0.76917 0.91193 0.91041 0.77992 0.93278 0.90807 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.90 36.01 0.36 -0.40 16 2 C 0.09 1.10 6.93 -82.26 -0.57 0.53 16 3 C -0.28 -3.17 10.72 -40.01 -0.43 -3.59 16 4 C 0.05 0.60 12.03 -17.36 -0.21 0.39 16 5 N -0.29 -4.28 12.58 30.62 0.39 -3.89 16 6 N -0.36 -4.64 3.10 -58.31 -0.18 -4.82 16 7 C 0.11 1.11 6.54 -5.20 -0.03 1.08 16 8 C 0.49 6.83 7.90 -10.99 -0.09 6.75 16 9 O -0.52 -10.21 16.03 5.56 0.09 -10.12 16 10 N -0.71 -8.64 5.35 -53.01 -0.28 -8.93 16 11 C 0.13 2.03 4.12 -67.11 -0.28 1.75 16 12 H 0.11 2.25 7.47 -51.93 -0.39 1.86 16 13 C -0.18 -3.23 7.68 -25.92 -0.20 -3.43 16 14 C 0.17 3.31 4.56 -67.12 -0.31 3.00 16 15 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 16 N -0.71 -17.65 5.31 -52.64 -0.28 -17.93 16 17 C -0.25 -6.88 9.97 -15.06 -0.15 -7.03 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 21 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 C -0.16 -2.47 7.58 -25.92 -0.20 -2.66 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.59 7.72 -51.93 -0.40 0.19 16 29 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 0.69 7.66 -51.93 -0.40 0.30 16 32 H 0.12 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.40 3.16 8.73 -40.82 -0.36 2.81 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.39 10.35 7.90 -40.82 -0.32 10.02 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -36.67 336.51 -7.33 -44.00 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.64 Total: 10.82 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.20 Total: -4.01 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.37 Total: -63.16 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.67 -7.33 -44.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020653170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.199 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds