Wall clock time and date at job start Mon Mar 30 2020 23:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30451 * 125.98579 * 2 1 4 4 N 1.39936 * 108.89507 * 180.26347 * 3 2 1 5 5 H 0.97003 * 125.75223 * 179.74080 * 4 3 2 6 6 C 1.34256 * 108.49008 * 359.73488 * 4 3 2 7 7 C 1.50706 * 126.28697 * 179.97438 * 6 4 3 8 8 C 1.38039 * 107.41808 * 0.02562 * 6 4 3 9 9 C 1.47436 * 126.41015 * 179.97438 * 8 6 4 10 10 O 1.21595 * 120.00311 * 90.00174 * 9 8 6 11 11 N 1.34775 * 119.99486 * 269.99172 * 9 8 6 12 12 C 1.46503 * 119.99705 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.85089 * 336.20262 * 12 11 9 14 14 C 1.54058 * 113.69195 * 107.47201 * 12 11 9 15 15 C 1.53781 * 86.98304 * 139.99342 * 14 12 11 16 16 H 1.09004 * 113.61167 * 219.98071 * 15 14 12 17 17 N 1.46494 * 113.61822 * 89.16483 * 15 14 12 18 18 C 1.36931 * 120.00458 * 105.86024 * 17 15 14 19 19 H 1.08002 * 120.00103 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00484 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00542 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00101 * 22 20 18 26 26 C 1.53776 * 87.17270 * 334.56928 * 15 14 12 27 27 H 1.08997 * 109.47247 * 270.16745 * 1 2 3 28 28 H 1.09002 * 109.47262 * 30.17580 * 1 2 3 29 29 H 1.09007 * 109.47251 * 150.17243 * 1 2 3 30 30 H 1.09000 * 109.46711 * 270.02392 * 7 6 4 31 31 H 1.08998 * 109.47659 * 30.02441 * 7 6 4 32 32 H 1.09000 * 109.47100 * 150.02812 * 7 6 4 33 33 H 0.97001 * 120.00332 * 0.02562 * 11 9 8 34 34 H 1.08997 * 113.61125 * 25.48399 * 14 12 11 35 35 H 1.09006 * 113.69535 * 254.50593 * 14 12 11 36 36 H 0.97000 * 119.99459 * 285.85822 * 17 15 14 37 37 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 38 38 H 1.09004 * 113.61562 * 140.02720 * 26 15 14 39 39 H 1.09001 * 113.61806 * 270.92839 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6110 0.6443 -0.0061 5 1 4.3841 1.2302 -0.0109 6 6 3.6438 -0.6978 -0.0039 7 6 4.8800 -1.5598 -0.0093 8 6 2.3373 -1.1431 0.0029 9 6 1.8917 -2.5485 0.0068 10 8 1.7129 -3.1267 1.0614 11 7 1.6823 -3.1922 -1.1586 12 6 1.2400 -4.5889 -1.1548 13 1 1.5033 -5.1137 -0.2365 14 6 -0.2319 -4.7733 -1.5706 15 6 0.2286 -6.0170 -2.3491 16 1 -0.2595 -6.1317 -3.3170 17 7 0.2108 -7.2471 -1.5538 18 6 -0.7657 -8.1839 -1.7632 19 1 -1.5226 -8.0161 -2.5151 20 6 -0.7822 -9.3498 -1.0100 21 7 0.1406 -9.5545 -0.0940 22 14 -2.1147 -10.6274 -1.2953 23 1 -1.9108 -11.7705 -0.3697 24 1 -3.4458 -10.0190 -1.0439 25 1 -2.0472 -11.1080 -2.6988 26 6 1.6152 -5.3575 -2.4328 27 1 -0.3633 0.0030 1.0276 28 1 -0.3634 0.8884 -0.5166 29 1 -0.3634 -0.8916 -0.5112 30 1 5.1726 -1.7690 -1.0382 31 1 5.6899 -1.0370 0.4995 32 1 4.6717 -2.4970 0.5069 33 1 1.8251 -2.7310 -2.0000 34 1 -0.6088 -3.9738 -2.2083 35 1 -0.8971 -5.0011 -0.7377 36 1 0.8909 -7.3980 -0.8787 37 1 0.1288 -10.3691 0.4327 38 1 2.4403 -6.0565 -2.2956 39 1 1.7423 -4.7173 -3.3058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020765378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:41 Heat of formation + Delta-G solvation = 60.281451 kcal Electronic energy + Delta-G solvation = -21214.240836 eV Core-core repulsion = 17966.103335 eV Total energy + Delta-G solvation = -3248.137502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61997 -39.44893 -37.72619 -33.93980 -33.75575 -32.66060 -31.68727 -29.67638 -28.36890 -27.51058 -25.07288 -24.56607 -23.21371 -21.80523 -20.36557 -19.79399 -18.67944 -17.81262 -17.33403 -16.42240 -15.97645 -15.29657 -14.82779 -14.60689 -14.07649 -14.00809 -13.81237 -13.58284 -13.26688 -13.06098 -12.72626 -12.66152 -12.62415 -12.23221 -12.01660 -11.91330 -11.62790 -10.99317 -10.84102 -10.77757 -10.24026 -10.14453 -9.94440 -9.68956 -9.59154 -9.55592 -8.88724 -8.78619 -8.62339 -6.97944 -5.76847 -3.06739 1.47509 2.27368 2.46385 2.75764 3.45320 3.49680 3.50885 3.54778 4.24803 4.47558 4.58410 4.68638 5.03293 5.06768 5.12078 5.20749 5.28723 5.43305 5.47709 5.49799 5.53291 5.53824 5.72568 5.74220 5.90394 6.03191 6.12928 6.25822 6.28996 6.41541 6.67704 6.76546 6.83595 6.91359 7.08252 7.36910 7.70818 7.77245 8.41484 8.46799 9.52151 10.08782 10.42766 11.45303 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.003368 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.435254 B = 8312.679963 C = 8561.616326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.298 5.298 4 N -0.465 5.465 5 H 0.440 0.560 6 C 0.130 3.870 7 C -0.100 4.100 8 C -0.280 4.280 9 C 0.592 3.408 10 O -0.532 6.532 11 N -0.709 5.709 12 C 0.124 3.876 13 H 0.114 0.886 14 C -0.183 4.183 15 C 0.171 3.829 16 H 0.067 0.933 17 N -0.705 5.705 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C -0.163 4.163 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 20.586 -3.784 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.121 5.121 4 N -0.172 5.172 5 H 0.284 0.716 6 C -0.003 4.003 7 C -0.159 4.159 8 C -0.295 4.295 9 C 0.376 3.624 10 O -0.408 6.408 11 N -0.359 5.359 12 C 0.021 3.979 13 H 0.132 0.868 14 C -0.226 4.226 15 C 0.058 3.942 16 H 0.085 0.915 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.203 4.203 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.315 21.252 -3.045 23.023 hybrid contribution 0.072 -0.932 -0.199 0.956 sum 8.387 20.320 -3.243 22.221 Atomic orbital electron populations 1.20284 0.86001 1.03708 1.03787 1.22353 0.97007 0.88851 0.96734 1.77076 0.86158 1.22196 1.26695 1.45958 1.07574 1.04718 1.58913 0.71554 1.21394 0.96228 0.84952 0.97677 1.20595 0.92080 0.99119 1.04080 1.20014 0.92086 0.94676 1.22709 1.17321 0.76684 0.84267 0.84089 1.90818 1.50985 1.67674 1.31287 1.46151 1.68187 1.13698 1.07822 1.22714 0.95806 0.79706 0.99710 0.86842 1.24355 0.95874 1.00553 1.01810 1.20912 0.92734 0.86112 0.94464 0.91521 1.42181 1.33440 1.16255 1.42536 1.19222 1.05079 0.97034 1.16311 0.90995 1.24776 0.98829 0.98470 0.98661 1.69660 1.35383 1.27388 1.25374 0.86241 0.81406 0.81126 0.77236 1.21690 1.21186 1.21222 1.23867 1.00774 0.99230 0.96419 0.89837 0.90379 0.90029 0.89337 0.90424 0.88901 0.77019 0.91271 0.90981 0.77974 0.93338 0.90899 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.28 36.00 0.37 -0.44 16 2 C 0.12 1.46 7.26 -82.02 -0.60 0.87 16 3 N -0.30 -3.58 12.63 33.89 0.43 -3.15 16 4 N -0.47 -4.28 7.29 33.86 0.25 -4.03 16 5 H 0.44 2.41 8.96 -182.72 -1.64 0.77 16 6 C 0.13 1.32 7.29 -81.60 -0.60 0.72 16 7 C -0.10 -0.72 10.25 36.01 0.37 -0.35 16 8 C -0.28 -3.62 5.88 -105.07 -0.62 -4.24 16 9 C 0.59 9.08 6.97 -12.52 -0.09 8.99 16 10 O -0.53 -10.64 16.71 5.28 0.09 -10.55 16 11 N -0.71 -9.52 5.36 -53.95 -0.29 -9.80 16 12 C 0.12 2.03 4.13 -66.97 -0.28 1.76 16 13 H 0.11 2.25 7.46 -51.93 -0.39 1.86 16 14 C -0.18 -3.19 7.70 -25.77 -0.20 -3.39 16 15 C 0.17 3.29 4.55 -67.12 -0.31 2.99 16 16 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 17 N -0.71 -17.55 5.31 -52.64 -0.28 -17.82 16 18 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.16 -2.51 7.57 -25.92 -0.20 -2.71 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.84 8.01 -51.92 -0.42 0.43 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.84 7.96 -51.93 -0.41 0.43 16 33 H 0.40 4.19 8.71 -40.82 -0.36 3.84 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.39 10.27 7.90 -40.82 -0.32 9.95 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -34.62 336.95 -8.29 -42.91 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.88 Total: 10.66 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.38 Total: -3.15 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.83 Total: -62.26 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.62 -8.29 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020765378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.191 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds