Wall clock time and date at job start Mon Mar 30 2020 23:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30451 * 125.98579 * 2 1 4 4 N 1.39936 * 108.89507 * 180.26347 * 3 2 1 5 5 H 0.97003 * 125.75223 * 179.74080 * 4 3 2 6 6 C 1.34256 * 108.49008 * 359.73488 * 4 3 2 7 7 C 1.50706 * 126.28697 * 179.97438 * 6 4 3 8 8 C 1.38039 * 107.41808 * 0.02562 * 6 4 3 9 9 C 1.47436 * 126.41015 * 179.97438 * 8 6 4 10 10 O 1.21595 * 120.00311 * 90.00174 * 9 8 6 11 11 N 1.34775 * 119.99486 * 269.99172 * 9 8 6 12 12 C 1.46503 * 119.99705 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.85089 * 336.20262 * 12 11 9 14 14 C 1.54058 * 113.69195 * 107.47201 * 12 11 9 15 15 C 1.53781 * 86.98304 * 139.99342 * 14 12 11 16 16 H 1.09004 * 113.61167 * 219.98071 * 15 14 12 17 17 N 1.46494 * 113.61822 * 89.16483 * 15 14 12 18 18 C 1.36931 * 120.00458 * 105.86024 * 17 15 14 19 19 H 1.08002 * 120.00103 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00484 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00542 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00101 * 22 20 18 26 26 C 1.53776 * 87.17270 * 334.56928 * 15 14 12 27 27 H 1.08997 * 109.47247 * 270.16745 * 1 2 3 28 28 H 1.09002 * 109.47262 * 30.17580 * 1 2 3 29 29 H 1.09007 * 109.47251 * 150.17243 * 1 2 3 30 30 H 1.09000 * 109.46711 * 270.02392 * 7 6 4 31 31 H 1.08998 * 109.47659 * 30.02441 * 7 6 4 32 32 H 1.09000 * 109.47100 * 150.02812 * 7 6 4 33 33 H 0.97001 * 120.00332 * 0.02562 * 11 9 8 34 34 H 1.08997 * 113.61125 * 25.48399 * 14 12 11 35 35 H 1.09006 * 113.69535 * 254.50593 * 14 12 11 36 36 H 0.97000 * 119.99459 * 285.85822 * 17 15 14 37 37 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 38 38 H 1.09004 * 113.61562 * 140.02720 * 26 15 14 39 39 H 1.09001 * 113.61806 * 270.92839 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6110 0.6443 -0.0061 5 1 4.3841 1.2302 -0.0109 6 6 3.6438 -0.6978 -0.0039 7 6 4.8800 -1.5598 -0.0093 8 6 2.3373 -1.1431 0.0029 9 6 1.8917 -2.5485 0.0068 10 8 1.7129 -3.1267 1.0614 11 7 1.6823 -3.1922 -1.1586 12 6 1.2400 -4.5889 -1.1548 13 1 1.5033 -5.1137 -0.2365 14 6 -0.2319 -4.7733 -1.5706 15 6 0.2286 -6.0170 -2.3491 16 1 -0.2595 -6.1317 -3.3170 17 7 0.2108 -7.2471 -1.5538 18 6 -0.7657 -8.1839 -1.7632 19 1 -1.5226 -8.0161 -2.5151 20 6 -0.7822 -9.3498 -1.0100 21 7 0.1406 -9.5545 -0.0940 22 14 -2.1147 -10.6274 -1.2953 23 1 -1.9108 -11.7705 -0.3697 24 1 -3.4458 -10.0190 -1.0439 25 1 -2.0472 -11.1080 -2.6988 26 6 1.6152 -5.3575 -2.4328 27 1 -0.3633 0.0030 1.0276 28 1 -0.3634 0.8884 -0.5166 29 1 -0.3634 -0.8916 -0.5112 30 1 5.1726 -1.7690 -1.0382 31 1 5.6899 -1.0370 0.4995 32 1 4.6717 -2.4970 0.5069 33 1 1.8251 -2.7310 -2.0000 34 1 -0.6088 -3.9738 -2.2083 35 1 -0.8971 -5.0011 -0.7377 36 1 0.8909 -7.3980 -0.8787 37 1 0.1288 -10.3691 0.4327 38 1 2.4403 -6.0565 -2.2956 39 1 1.7423 -4.7173 -3.3058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020765378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:41 Heat of formation + Delta-G solvation = 33.873117 kcal Electronic energy + Delta-G solvation = -21215.385987 eV Core-core repulsion = 17966.103335 eV Total energy + Delta-G solvation = -3249.282653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.49734 -40.77006 -39.14536 -35.67382 -34.56684 -34.22044 -32.63607 -31.53482 -29.22616 -28.29831 -26.48123 -26.26525 -24.81953 -23.04230 -21.24568 -20.91419 -20.05734 -19.31315 -18.74866 -17.58098 -17.26459 -16.64812 -16.15790 -15.82177 -15.64853 -15.34619 -14.87920 -14.83142 -14.32198 -14.25312 -14.06273 -13.54599 -13.39774 -13.34230 -13.29324 -13.23292 -12.97743 -12.74152 -12.60515 -12.19743 -11.90748 -11.77859 -11.68187 -11.32302 -10.95423 -10.80610 -10.40606 -9.94524 -9.69034 -8.99616 -7.93008 -5.22402 0.65860 1.34369 1.49032 1.52554 1.55811 1.58452 1.73510 2.40247 2.57807 3.38918 3.49095 3.63809 3.68947 3.86850 3.93899 4.00326 4.16572 4.32163 4.35006 4.41063 4.61644 4.68021 4.71731 4.83770 4.87626 4.87993 4.97660 5.03008 5.06298 5.20590 5.29339 5.36281 5.42464 5.53849 5.72895 6.25275 6.29529 6.54100 6.64289 7.31761 7.34236 8.11196 8.32228 9.30324 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.003368 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.435254 B = 8312.679963 C = 8561.616326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.109 3.891 3 N -0.316 5.316 4 N -0.449 5.449 5 H 0.457 0.543 6 C 0.148 3.852 7 C -0.100 4.100 8 C -0.315 4.315 9 C 0.599 3.401 10 O -0.588 6.588 11 N -0.689 5.689 12 C 0.131 3.869 13 H 0.072 0.928 14 C -0.171 4.171 15 C 0.150 3.850 16 H 0.077 0.923 17 N -0.723 5.723 18 C -0.244 4.244 19 H 0.082 0.918 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.298 1.298 24 H -0.279 1.279 25 H -0.274 1.274 26 C -0.135 4.135 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.415 0.585 34 H 0.105 0.895 35 H 0.035 0.965 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 22.526 -5.948 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 N -0.139 5.139 4 N -0.157 5.157 5 H 0.306 0.694 6 C 0.014 3.986 7 C -0.158 4.158 8 C -0.329 4.329 9 C 0.385 3.615 10 O -0.468 6.468 11 N -0.339 5.339 12 C 0.026 3.974 13 H 0.090 0.910 14 C -0.213 4.213 15 C 0.039 3.961 16 H 0.095 0.905 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.100 0.900 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.225 1.225 24 H -0.205 1.205 25 H -0.199 1.199 26 C -0.174 4.174 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.253 0.747 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.979 23.286 -5.295 25.513 hybrid contribution -0.076 -1.406 0.441 1.476 sum 8.903 21.880 -4.853 24.115 Atomic orbital electron populations 1.20334 0.85222 1.04436 1.03842 1.22600 0.97823 0.88681 0.96666 1.77030 0.87210 1.22282 1.27375 1.45960 1.07477 1.04705 1.57542 0.69442 1.21734 0.96238 0.85422 0.95222 1.20729 0.91542 0.97872 1.05665 1.19887 0.93662 0.93241 1.26145 1.17640 0.75422 0.85018 0.83421 1.90794 1.53473 1.69179 1.33332 1.45887 1.67143 1.12401 1.08458 1.22298 0.95376 0.81083 0.98664 0.90991 1.24228 0.95781 1.00564 1.00714 1.21250 0.95905 0.84761 0.94198 0.90488 1.42378 1.32663 1.17906 1.43117 1.19678 1.05204 0.97255 1.15433 0.90044 1.25618 1.01345 1.00917 0.99111 1.69834 1.37620 1.27782 1.26948 0.85183 0.78813 0.78283 0.77314 1.22474 1.20531 1.19934 1.23703 0.97836 0.98625 0.97282 0.90134 0.88553 0.90342 0.87017 0.87477 0.90987 0.74717 0.87649 0.94630 0.79636 0.94077 0.91794 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.28 71.23 0.73 -0.84 16 2 C 0.11 2.58 7.26 43.51 0.32 2.90 16 3 N -0.32 -6.99 12.63 -46.68 -0.59 -7.58 16 4 N -0.45 -7.09 7.29 -46.79 -0.34 -7.43 16 5 H 0.46 3.58 8.96 -213.42 -1.91 1.66 16 6 C 0.15 2.68 7.29 42.14 0.31 2.99 16 7 C -0.10 -1.17 10.25 71.24 0.73 -0.44 16 8 C -0.31 -7.79 5.88 -20.15 -0.12 -7.91 16 9 C 0.60 18.29 6.97 86.67 0.60 18.90 16 10 O -0.59 -24.49 16.71 -4.02 -0.07 -24.55 16 11 N -0.69 -17.55 5.36 -442.86 -2.37 -19.92 16 12 C 0.13 4.23 4.13 45.61 0.19 4.42 16 13 H 0.07 3.00 7.46 -2.39 -0.02 2.98 16 14 C -0.17 -5.81 7.70 31.22 0.24 -5.57 16 15 C 0.15 5.62 4.55 45.52 0.21 5.82 16 16 H 0.08 2.74 8.11 -2.38 -0.02 2.72 16 17 N -0.72 -36.60 5.31 -320.46 -1.70 -38.31 16 18 C -0.24 -13.58 9.97 84.03 0.84 -12.74 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 22 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 C -0.14 -3.88 7.57 31.12 0.24 -3.65 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.56 8.01 -2.38 -0.02 1.54 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.22 7.96 -2.39 -0.02 1.20 16 33 H 0.42 7.52 8.71 -92.71 -0.81 6.71 16 34 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 35 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.37 20.61 7.90 -92.71 -0.73 19.87 16 37 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.12 2.48 8.12 -2.39 -0.02 2.46 16 Total: -1.00 -78.46 336.95 -0.37 -78.83 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -2.36 Total: 31.07 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 4.75 Total: -0.19 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -4.72 Total: -133.68 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.55 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -78.46 -0.37 -78.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020765378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.698 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds