Wall clock time and date at job start Mon Mar 30 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34125 * 125.99131 * 2 1 4 4 C 1.30498 * 109.25945 * 180.25466 * 3 2 1 5 5 N 1.35044 * 108.69707 * 359.75425 * 4 3 2 6 6 H 0.97008 * 126.39502 * 179.97438 * 5 4 3 7 7 C 1.34675 * 125.99266 * 179.83147 * 2 1 3 8 8 C 1.50701 * 126.58771 * 0.02562 * 7 2 1 9 9 C 1.50703 * 109.47064 * 84.71512 * 8 7 2 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.84922 * 25.32506 * 12 11 9 14 14 C 1.53780 * 113.61591 * 156.52506 * 12 11 9 15 15 C 1.53787 * 87.08051 * 139.98025 * 14 12 11 16 16 H 1.08996 * 113.61351 * 219.93645 * 15 14 12 17 17 N 1.46490 * 113.61229 * 89.11665 * 15 14 12 18 18 C 1.36942 * 120.00067 * 155.00133 * 17 15 14 19 19 H 1.08004 * 119.99714 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00468 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00379 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47182 * 59.99495 * 22 20 18 24 24 H 1.48501 * 109.47495 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47167 * 299.99706 * 22 20 18 26 26 C 1.53779 * 113.61253 * 254.13363 * 12 11 9 27 27 H 1.09004 * 109.46907 * 270.16975 * 1 2 3 28 28 H 1.08999 * 109.47306 * 30.17289 * 1 2 3 29 29 H 1.09004 * 109.46997 * 150.17520 * 1 2 3 30 30 H 1.07999 * 125.65409 * 179.77863 * 4 3 2 31 31 H 1.09002 * 109.47060 * 204.71476 * 8 7 2 32 32 H 1.09001 * 109.47380 * 324.71564 * 8 7 2 33 33 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 34 34 H 1.08998 * 113.61662 * 254.52540 * 14 12 11 35 35 H 1.09006 * 113.61623 * 25.43463 * 14 12 11 36 36 H 0.97000 * 120.00523 * 334.99652 * 17 15 14 37 37 H 0.96999 * 120.00415 * 180.02562 * 21 20 18 38 38 H 1.09004 * 113.61720 * 334.56522 * 26 12 11 39 39 H 1.09005 * 113.61396 * 105.47028 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0055 5 7 3.5912 -0.6401 -0.0037 6 1 4.3914 -1.1886 -0.0071 7 6 2.2984 -1.0896 0.0032 8 6 1.8473 -2.5275 0.0069 9 6 1.5725 -2.9714 -1.4068 10 8 1.7274 -2.1964 -2.3267 11 7 1.1538 -4.2294 -1.6488 12 6 0.8873 -4.6611 -3.0231 13 1 1.4488 -4.0902 -3.7626 14 6 0.9805 -6.1835 -3.2197 15 6 -0.2494 -6.0615 -4.1348 16 1 -0.9680 -6.8716 -4.0107 17 7 0.0862 -5.8087 -5.5382 18 6 -0.7882 -6.1722 -6.5275 19 1 -1.7250 -6.6457 -6.2730 20 6 -0.4701 -5.9332 -7.8573 21 7 0.6718 -5.3566 -8.1675 22 14 -1.6630 -6.4284 -9.2067 23 1 -2.9524 -5.7176 -9.0129 24 1 -1.0927 -6.0663 -10.5291 25 1 -1.8927 -7.8945 -9.1508 26 6 -0.6101 -4.7873 -3.3497 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3633 -0.8916 -0.5111 30 1 4.4004 1.3687 -0.0102 31 1 2.6291 -3.1525 0.4385 32 1 0.9379 -2.6215 0.6004 33 1 1.0296 -4.8492 -0.9130 34 1 1.8830 -6.5019 -3.7414 35 1 0.7929 -6.7536 -2.3098 36 1 0.9276 -5.3837 -5.7668 37 1 0.8940 -5.1892 -9.0967 38 1 -1.2335 -4.9749 -2.4754 39 1 -0.9899 -3.9802 -3.9762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020980869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:37 Heat of formation + Delta-G solvation = 48.129046 kcal Electronic energy + Delta-G solvation = -21028.448368 eV Core-core repulsion = 17779.783899 eV Total energy + Delta-G solvation = -3248.664469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21309 -39.76914 -37.97295 -34.03830 -33.19801 -32.99778 -32.39722 -29.82128 -28.88980 -26.08101 -25.13054 -24.27186 -22.81866 -21.79655 -20.67539 -19.68980 -18.81443 -17.83807 -17.38818 -17.02604 -15.92597 -15.50993 -15.09111 -14.88044 -14.42655 -14.00130 -13.89006 -13.38275 -13.10046 -12.89167 -12.82502 -12.76608 -12.49089 -12.15868 -12.04761 -11.90794 -11.63335 -10.86655 -10.80210 -10.28945 -10.18202 -10.05903 -10.01087 -9.90727 -9.72839 -9.59335 -8.92222 -8.71864 -8.29527 -7.01581 -5.79679 -3.10015 1.86115 2.69171 2.94906 3.03801 3.43199 3.43765 3.47753 3.49066 4.39348 4.55780 4.58884 4.74451 4.88220 5.07012 5.12600 5.19631 5.24349 5.25812 5.37727 5.46721 5.67063 5.86121 5.88234 5.96329 5.98197 6.06667 6.07089 6.19610 6.34889 6.60225 6.67952 6.71001 6.77744 7.02267 7.25730 7.63190 7.68406 7.98811 8.34623 8.38463 9.49059 10.05207 10.38962 11.42427 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.003216 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.394875 B = 8705.451572 C = 9005.425498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.021 3.979 3 N -0.493 5.493 4 C 0.187 3.813 5 N -0.563 5.563 6 H 0.417 0.583 7 C -0.007 4.007 8 C -0.066 4.066 9 C 0.505 3.495 10 O -0.524 6.524 11 N -0.719 5.719 12 C 0.126 3.874 13 H 0.111 0.889 14 C -0.164 4.164 15 C 0.172 3.828 16 H 0.068 0.932 17 N -0.706 5.706 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.184 4.184 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.207 0.793 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.069 0.931 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 4.092 22.004 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 N -0.212 5.212 4 C -0.096 4.096 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.122 4.122 8 C -0.107 4.107 9 C 0.290 3.710 10 O -0.399 6.399 11 N -0.369 5.369 12 C 0.022 3.978 13 H 0.129 0.871 14 C -0.204 4.204 15 C 0.058 3.942 16 H 0.086 0.914 17 N -0.344 5.344 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.226 4.226 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.224 0.776 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.636 5.438 21.152 22.327 hybrid contribution 0.502 -1.384 -0.499 1.554 sum 5.138 4.054 20.654 21.666 Atomic orbital electron populations 1.20042 0.87832 1.03098 1.01675 1.20429 0.96387 0.87789 1.06183 1.70160 1.00587 1.30705 1.19782 1.24855 0.97353 0.81844 1.05592 1.43106 1.07908 1.08715 1.56883 0.74520 1.20165 0.84116 0.95415 1.12551 1.20059 1.03764 0.90856 0.96009 1.20489 0.77419 0.82381 0.90748 1.90782 1.50759 1.52540 1.45799 1.46126 1.68339 1.12591 1.09890 1.22625 0.97731 0.95209 0.82210 0.87102 1.23896 1.01621 0.94411 1.00494 1.20944 0.93905 0.94433 0.84885 0.91361 1.42193 1.22117 1.71382 0.98709 1.19226 0.99173 1.33154 0.86246 0.90958 1.24785 0.97397 1.01222 0.97303 1.69657 1.22761 1.47667 1.17711 0.86233 0.80228 0.78129 0.81362 1.21143 1.21653 1.21186 1.24344 0.94971 1.02861 1.00455 0.91578 0.91011 0.91433 0.77619 0.88423 0.86733 0.77074 0.90941 0.90309 0.78005 0.93301 0.91242 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.14 36.00 0.37 -0.43 16 2 C 0.02 0.29 7.09 -82.85 -0.59 -0.30 16 3 N -0.49 -6.96 11.25 -10.87 -0.12 -7.09 16 4 C 0.19 1.97 13.04 -90.38 -1.18 0.79 16 5 N -0.56 -5.39 6.15 -10.30 -0.06 -5.45 16 6 H 0.42 2.59 8.96 -40.82 -0.37 2.22 16 7 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 8 C -0.07 -0.58 5.81 -29.03 -0.17 -0.75 16 9 C 0.51 6.74 7.82 -10.98 -0.09 6.65 16 10 O -0.52 -9.90 15.65 5.56 0.09 -9.81 16 11 N -0.72 -8.62 5.36 -53.02 -0.28 -8.90 16 12 C 0.13 2.02 4.09 -67.12 -0.27 1.74 16 13 H 0.11 2.20 7.50 -51.93 -0.39 1.82 16 14 C -0.16 -2.50 7.58 -25.92 -0.20 -2.69 16 15 C 0.17 3.30 4.57 -67.03 -0.31 2.99 16 16 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 17 N -0.71 -17.63 5.31 -52.55 -0.28 -17.91 16 18 C -0.25 -6.84 9.97 -15.06 -0.15 -6.99 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.18 -3.18 7.69 -25.83 -0.20 -3.37 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 30 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.76 8.04 -51.93 -0.42 0.34 16 33 H 0.40 3.24 8.71 -40.82 -0.36 2.88 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.39 10.34 7.90 -40.82 -0.32 10.02 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -36.76 334.95 -8.87 -45.63 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.61 Total: 12.03 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.35 Total: -3.31 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.02 Total: -66.95 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.76 -8.87 -45.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020980869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.759 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds