Wall clock time and date at job start Mon Mar 30 2020 23:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34125 * 125.99131 * 2 1 4 4 C 1.30498 * 109.25945 * 180.25466 * 3 2 1 5 5 N 1.35044 * 108.69707 * 359.75425 * 4 3 2 6 6 H 0.97008 * 126.39502 * 179.97438 * 5 4 3 7 7 C 1.34675 * 125.99266 * 179.83147 * 2 1 3 8 8 C 1.50701 * 126.58771 * 0.02562 * 7 2 1 9 9 C 1.50703 * 109.47064 * 84.71512 * 8 7 2 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.84922 * 25.32506 * 12 11 9 14 14 C 1.53780 * 113.61591 * 156.52506 * 12 11 9 15 15 C 1.53787 * 87.08051 * 139.98025 * 14 12 11 16 16 H 1.08996 * 113.61351 * 219.93645 * 15 14 12 17 17 N 1.46490 * 113.61229 * 89.11665 * 15 14 12 18 18 C 1.36942 * 120.00067 * 155.00133 * 17 15 14 19 19 H 1.08004 * 119.99714 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00468 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00379 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47182 * 59.99495 * 22 20 18 24 24 H 1.48501 * 109.47495 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47167 * 299.99706 * 22 20 18 26 26 C 1.53779 * 113.61253 * 254.13363 * 12 11 9 27 27 H 1.09004 * 109.46907 * 270.16975 * 1 2 3 28 28 H 1.08999 * 109.47306 * 30.17289 * 1 2 3 29 29 H 1.09004 * 109.46997 * 150.17520 * 1 2 3 30 30 H 1.07999 * 125.65409 * 179.77863 * 4 3 2 31 31 H 1.09002 * 109.47060 * 204.71476 * 8 7 2 32 32 H 1.09001 * 109.47380 * 324.71564 * 8 7 2 33 33 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 34 34 H 1.08998 * 113.61662 * 254.52540 * 14 12 11 35 35 H 1.09006 * 113.61623 * 25.43463 * 14 12 11 36 36 H 0.97000 * 120.00523 * 334.99652 * 17 15 14 37 37 H 0.96999 * 120.00415 * 180.02562 * 21 20 18 38 38 H 1.09004 * 113.61720 * 334.56522 * 26 12 11 39 39 H 1.09005 * 113.61396 * 105.47028 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0055 5 7 3.5912 -0.6401 -0.0037 6 1 4.3914 -1.1886 -0.0071 7 6 2.2984 -1.0896 0.0032 8 6 1.8473 -2.5275 0.0069 9 6 1.5725 -2.9714 -1.4068 10 8 1.7274 -2.1964 -2.3267 11 7 1.1538 -4.2294 -1.6488 12 6 0.8873 -4.6611 -3.0231 13 1 1.4488 -4.0902 -3.7626 14 6 0.9805 -6.1835 -3.2197 15 6 -0.2494 -6.0615 -4.1348 16 1 -0.9680 -6.8716 -4.0107 17 7 0.0862 -5.8087 -5.5382 18 6 -0.7882 -6.1722 -6.5275 19 1 -1.7250 -6.6457 -6.2730 20 6 -0.4701 -5.9332 -7.8573 21 7 0.6718 -5.3566 -8.1675 22 14 -1.6630 -6.4284 -9.2067 23 1 -2.9524 -5.7176 -9.0129 24 1 -1.0927 -6.0663 -10.5291 25 1 -1.8927 -7.8945 -9.1508 26 6 -0.6101 -4.7873 -3.3497 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3633 -0.8916 -0.5111 30 1 4.4004 1.3687 -0.0102 31 1 2.6291 -3.1525 0.4385 32 1 0.9379 -2.6215 0.6004 33 1 1.0296 -4.8492 -0.9130 34 1 1.8830 -6.5019 -3.7414 35 1 0.7929 -6.7536 -2.3098 36 1 0.9276 -5.3837 -5.7668 37 1 0.8940 -5.1892 -9.0967 38 1 -1.2335 -4.9749 -2.4754 39 1 -0.9899 -3.9802 -3.9762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020980869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:36 Heat of formation + Delta-G solvation = 20.263915 kcal Electronic energy + Delta-G solvation = -21029.656691 eV Core-core repulsion = 17779.783899 eV Total energy + Delta-G solvation = -3249.872792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.03275 -40.97991 -39.32641 -35.71558 -34.33586 -34.03162 -33.51629 -31.67423 -29.82977 -27.03318 -26.50062 -26.04457 -24.36435 -22.67122 -21.75782 -20.63992 -20.14983 -19.35551 -18.67280 -18.07091 -17.25782 -16.65553 -16.43814 -16.02729 -15.75591 -15.38389 -15.21318 -14.73438 -14.45641 -14.14069 -13.76956 -13.65740 -13.63688 -13.33209 -13.27930 -13.07682 -12.98306 -12.75747 -12.59319 -12.22790 -11.80754 -11.71235 -11.32760 -10.99041 -10.93254 -10.86588 -10.69637 -9.93840 -9.14711 -9.03285 -7.96641 -5.26416 1.02666 1.46423 1.50212 1.56109 1.67504 2.10399 2.26712 2.47872 2.54924 3.35487 3.62713 3.66367 3.81897 3.85149 3.91599 4.08736 4.12086 4.31887 4.36948 4.41229 4.46644 4.57895 4.82597 4.84410 4.85461 5.00829 5.02612 5.08277 5.17613 5.26066 5.27426 5.34645 5.50587 5.72477 5.83083 6.25910 6.58598 6.68552 7.15826 7.30261 7.38457 8.07325 8.27857 9.26760 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.003216 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.394875 B = 8705.451572 C = 9005.425498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.017 4.017 3 N -0.541 5.541 4 C 0.189 3.811 5 N -0.555 5.555 6 H 0.433 0.567 7 C -0.014 4.014 8 C -0.053 4.053 9 C 0.503 3.497 10 O -0.588 6.588 11 N -0.699 5.699 12 C 0.133 3.867 13 H 0.063 0.937 14 C -0.136 4.136 15 C 0.148 3.852 16 H 0.078 0.922 17 N -0.725 5.725 18 C -0.245 4.245 19 H 0.083 0.917 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.977 3.023 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.272 1.272 26 C -0.172 4.172 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.243 0.757 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.421 0.579 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.371 0.629 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 2.332 24.877 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.145 4.145 3 N -0.261 5.261 4 C -0.095 4.095 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.130 4.130 8 C -0.094 4.094 9 C 0.291 3.709 10 O -0.467 6.467 11 N -0.351 5.351 12 C 0.028 3.972 13 H 0.081 0.919 14 C -0.175 4.175 15 C 0.037 3.963 16 H 0.096 0.904 17 N -0.362 5.362 18 C -0.377 4.377 19 H 0.100 0.900 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.214 4.214 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.259 0.741 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.259 0.741 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.127 0.873 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.418 3.608 24.131 24.796 hybrid contribution 0.573 -0.801 -1.291 1.624 sum 4.991 2.806 22.840 23.547 Atomic orbital electron populations 1.20033 0.87473 1.02096 1.02749 1.20840 0.97293 0.88661 1.07710 1.70112 1.02278 1.31950 1.21789 1.25587 0.97450 0.82732 1.03747 1.43126 1.08126 1.08691 1.55945 0.72598 1.20508 0.84535 0.96258 1.11713 1.20144 1.06532 0.89729 0.92958 1.21295 0.75866 0.81785 0.92000 1.90776 1.53450 1.54286 1.48209 1.45828 1.67527 1.12904 1.08863 1.22097 0.96135 0.95477 0.83517 0.91883 1.23726 0.98835 0.93941 1.01019 1.21319 0.96564 0.95534 0.82873 0.90362 1.42405 1.21247 1.71601 1.00963 1.19696 0.99521 1.31363 0.87085 0.89958 1.25646 0.99248 1.02379 0.99824 1.69835 1.24942 1.50046 1.17492 0.85166 0.78051 0.78310 0.77965 1.20493 1.22458 1.19791 1.24214 0.96312 1.00072 1.00762 0.89409 0.92677 0.91705 0.74091 0.84242 0.83698 0.74064 0.92225 0.85215 0.79789 0.94074 0.87322 0.95211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.14 71.24 0.72 -0.80 16 2 C -0.02 -0.44 7.09 41.39 0.29 -0.15 16 3 N -0.54 -15.24 11.25 -188.32 -2.12 -17.36 16 4 C 0.19 3.75 13.04 180.26 2.35 6.10 16 5 N -0.55 -9.56 6.15 -186.49 -1.15 -10.70 16 6 H 0.43 4.27 8.96 -92.70 -0.83 3.44 16 7 C -0.01 -0.29 5.73 40.96 0.23 -0.06 16 8 C -0.05 -0.76 5.81 29.10 0.17 -0.59 16 9 C 0.50 12.49 7.82 87.66 0.69 13.18 16 10 O -0.59 -22.55 15.65 -3.02 -0.05 -22.60 16 11 N -0.70 -14.69 5.36 -440.05 -2.36 -17.05 16 12 C 0.13 4.14 4.09 45.52 0.19 4.32 16 13 H 0.06 2.63 7.50 -2.39 -0.02 2.61 16 14 C -0.14 -3.78 7.58 31.12 0.24 -3.55 16 15 C 0.15 5.51 4.57 45.58 0.21 5.72 16 16 H 0.08 2.75 8.10 -2.39 -0.02 2.73 16 17 N -0.72 -36.96 5.31 -320.17 -1.70 -38.66 16 18 C -0.25 -13.71 9.97 84.03 0.84 -12.87 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 22 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.17 -5.74 7.69 31.18 0.24 -5.50 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.47 7.89 -2.38 -0.02 1.45 16 30 H 0.24 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.15 1.25 8.04 -2.39 -0.02 1.23 16 33 H 0.42 4.70 8.71 -92.70 -0.81 3.89 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.13 2.34 8.11 -2.38 -0.02 2.32 16 36 H 0.37 20.78 7.90 -92.71 -0.73 20.05 16 37 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -86.18 334.95 0.29 -85.89 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -1.28 Total: 31.12 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.63 Total: 1.65 kcal Atomic # 7 Polarization: -137.77 SS G_CDS: -7.04 Total: -144.81 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -86.18 0.29 -85.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020980869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.155 kcal (2) G-P(sol) polarization free energy of solvation -86.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds