Wall clock time and date at job start Tue Mar 31 2020 00:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47435 * 2 1 4 4 N 1.33313 * 126.10645 * 270.12513 * 3 2 1 5 5 C 1.30861 * 109.68347 * 180.27080 * 4 3 2 6 6 N 1.34496 * 109.16059 * 359.76890 * 5 4 3 7 7 H 0.96999 * 126.47006 * 180.02562 * 6 5 4 8 8 C 1.36659 * 126.10367 * 90.00051 * 3 2 1 9 9 C 1.46763 * 126.84815 * 0.02562 * 8 3 2 10 10 O 1.21683 * 119.99840 * 359.70991 * 9 8 3 11 11 N 1.34777 * 120.00153 * 179.71167 * 9 8 3 12 12 C 1.46498 * 119.99828 * 180.27869 * 11 9 8 13 13 H 1.09001 * 112.85160 * 25.05344 * 12 11 9 14 14 C 1.53784 * 113.61507 * 156.25317 * 12 11 9 15 15 C 1.53776 * 87.08293 * 139.97795 * 14 12 11 16 16 H 1.08992 * 113.61412 * 219.93513 * 15 14 12 17 17 N 1.46497 * 113.61357 * 89.11476 * 15 14 12 18 18 C 1.36943 * 120.00156 * 154.99957 * 17 15 14 19 19 H 1.08000 * 119.99347 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00499 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99863 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46935 * 60.00112 * 22 20 18 24 24 H 1.48501 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47342 * 300.00034 * 22 20 18 26 26 C 1.53781 * 113.61116 * 253.85697 * 12 11 9 27 27 H 1.09004 * 109.47325 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46752 * 299.99652 * 1 2 3 30 30 H 1.09005 * 109.46752 * 240.00348 * 2 1 3 31 31 H 1.08992 * 109.47690 * 120.00335 * 2 1 3 32 32 H 1.08003 * 125.41822 * 179.78313 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.09000 * 113.61297 * 254.52834 * 14 12 11 35 35 H 1.08999 * 113.61335 * 25.42565 * 14 12 11 36 36 H 0.97003 * 120.00503 * 334.99771 * 17 15 14 37 37 H 0.96997 * 120.00738 * 180.02562 * 21 20 18 38 38 H 1.08995 * 113.61680 * 334.57196 * 26 12 11 39 39 H 1.09006 * 113.61326 * 105.47146 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2921 2.1623 -1.0771 5 6 2.7168 3.3435 -0.7071 6 7 2.7399 3.4035 0.6363 7 1 3.0128 4.1626 1.1750 8 6 2.3008 2.1800 1.1041 9 6 2.1579 1.7742 2.5073 10 8 1.7580 0.6578 2.7800 11 7 2.4695 2.6380 3.4938 12 6 2.3326 2.2308 4.8943 13 1 2.4019 1.1515 5.0300 14 6 3.2238 3.0314 5.8586 15 6 2.0362 3.0264 6.8355 16 1 1.8996 3.9712 7.3615 17 7 2.0189 1.8683 7.7324 18 6 1.3840 1.9492 8.9431 19 1 0.8958 2.8667 9.2364 20 6 1.3681 0.8520 9.7931 21 7 1.9628 -0.2664 9.4354 22 14 0.5027 0.9626 11.4449 23 1 -0.9340 1.2718 11.2312 24 1 0.6288 -0.3340 12.1576 25 1 1.1248 2.0378 12.2586 26 6 1.1252 2.8647 5.6049 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0030 4.1430 -1.3744 33 1 2.7887 3.5279 3.2763 34 1 4.0881 2.4737 6.2192 35 1 3.4828 4.0243 5.4911 36 1 2.4571 1.0440 7.4687 37 1 1.9513 -1.0333 10.0293 38 1 0.8093 3.8120 5.1680 39 1 0.2976 2.1727 5.7611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020993478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:08 Heat of formation + Delta-G solvation = 46.200509 kcal Electronic energy + Delta-G solvation = -21174.334902 eV Core-core repulsion = 17925.586805 eV Total energy + Delta-G solvation = -3248.748097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.43423 -39.65719 -37.90921 -34.69111 -33.84997 -32.77994 -31.99981 -29.85862 -29.06886 -25.18759 -25.02943 -23.89560 -23.10189 -22.53217 -21.10550 -19.91788 -19.12719 -18.35733 -17.40430 -16.27103 -16.04578 -15.72748 -15.03044 -14.83252 -14.36561 -14.26366 -13.96596 -13.91332 -13.47928 -13.13316 -12.76527 -12.39431 -12.16850 -12.06494 -11.72555 -11.48050 -11.00279 -10.88438 -10.81515 -10.53368 -10.34341 -10.24290 -10.21071 -10.00134 -9.76204 -9.64732 -8.97756 -8.89768 -8.60958 -7.04214 -5.81584 -3.12210 1.14576 2.63472 2.66465 3.18129 3.27961 3.41953 3.46367 3.47702 4.20910 4.53693 4.63384 4.81168 4.94327 5.05217 5.17418 5.32071 5.42048 5.44116 5.47923 5.50854 5.63158 5.82046 5.93499 6.00208 6.01763 6.09963 6.20978 6.25958 6.28923 6.44132 6.53514 6.65084 6.71512 6.92749 6.97313 7.46273 7.66121 7.72528 8.19587 8.36328 9.47141 10.02593 10.36550 11.40396 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003376 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.109072 B = 8292.854196 C = 8870.948178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.098 3.902 4 N -0.498 5.498 5 C 0.213 3.787 6 N -0.556 5.556 7 H 0.421 0.579 8 C -0.087 4.087 9 C 0.588 3.412 10 O -0.515 6.515 11 N -0.717 5.717 12 C 0.127 3.873 13 H 0.116 0.884 14 C -0.164 4.164 15 C 0.173 3.827 16 H 0.069 0.931 17 N -0.705 5.705 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C -0.184 4.184 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.214 0.786 33 H 0.388 0.612 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.386 0.614 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 9.902 -19.529 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.036 4.036 4 N -0.218 5.218 5 C -0.070 4.070 6 N -0.161 5.161 7 H 0.260 0.740 8 C -0.203 4.203 9 C 0.374 3.626 10 O -0.390 6.390 11 N -0.366 5.366 12 C 0.023 3.977 13 H 0.134 0.866 14 C -0.204 4.204 15 C 0.059 3.941 16 H 0.087 0.913 17 N -0.343 5.343 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.226 4.226 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.231 0.769 33 H 0.221 0.779 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.334 8.787 -19.894 21.873 hybrid contribution 0.150 1.130 1.587 1.954 sum 2.484 9.917 -18.307 20.969 Atomic orbital electron populations 1.21612 0.94333 1.01887 1.01713 1.20075 0.96309 0.88679 1.03749 1.21070 0.98849 0.97063 0.86584 1.70122 1.18398 1.02703 1.30570 1.25116 1.01820 0.98052 0.82062 1.43334 1.50488 1.13524 1.08799 0.74015 1.21131 1.15480 0.88169 0.95479 1.16892 0.78029 0.85171 0.82487 1.90861 1.45687 1.19804 1.82642 1.46049 1.67598 1.15951 1.07035 1.22711 0.97813 1.00776 0.76353 0.86572 1.23905 0.99505 0.99396 0.97636 1.20930 0.91853 0.92619 0.88685 0.91321 1.42188 1.64554 1.10713 1.16857 1.19217 1.27582 0.97888 0.93272 0.90979 1.24781 1.00919 0.95936 0.98960 1.69649 1.47878 1.02674 1.37470 0.86239 0.79378 0.76678 0.83687 1.21150 1.21622 1.21186 1.24358 0.98539 1.00007 0.99712 0.93057 0.92103 0.92474 0.90730 0.88626 0.76943 0.77893 0.90708 0.90483 0.77938 0.93251 0.91417 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.15 0.37 -1.29 16 2 C -0.05 -0.64 5.93 -27.88 -0.17 -0.80 16 3 C 0.10 1.29 6.40 -82.52 -0.53 0.77 16 4 N -0.50 -5.96 11.20 -10.64 -0.12 -6.08 16 5 C 0.21 1.69 13.01 -90.57 -1.18 0.52 16 6 N -0.56 -4.32 6.07 -10.79 -0.07 -4.39 16 7 H 0.42 1.72 8.32 -40.82 -0.34 1.38 16 8 C -0.09 -1.06 7.08 -82.15 -0.58 -1.64 16 9 C 0.59 8.59 7.79 -12.82 -0.10 8.49 16 10 O -0.51 -9.47 14.44 5.20 0.08 -9.40 16 11 N -0.72 -9.00 5.36 -54.30 -0.29 -9.29 16 12 C 0.13 2.01 4.09 -67.12 -0.27 1.73 16 13 H 0.12 2.24 7.50 -51.93 -0.39 1.85 16 14 C -0.16 -2.46 7.58 -25.92 -0.20 -2.66 16 15 C 0.17 3.26 4.57 -67.03 -0.31 2.95 16 16 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 17 N -0.70 -17.32 5.31 -52.55 -0.28 -17.60 16 18 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.18 -3.13 7.69 -25.82 -0.20 -3.32 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.36 6.48 -51.93 -0.34 1.02 16 32 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.39 3.42 7.95 -40.82 -0.32 3.10 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.39 10.17 7.90 -40.82 -0.32 9.85 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -34.16 331.35 -8.87 -43.04 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.48 Total: 11.39 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -3.41 Total: -2.57 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.03 Total: -64.59 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.16 -8.87 -43.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020993478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.238 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds