Wall clock time and date at job start Tue Mar 31 2020 00:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47435 * 2 1 4 4 N 1.33313 * 126.10645 * 270.12513 * 3 2 1 5 5 C 1.30861 * 109.68347 * 180.27080 * 4 3 2 6 6 N 1.34496 * 109.16059 * 359.76890 * 5 4 3 7 7 H 0.96999 * 126.47006 * 180.02562 * 6 5 4 8 8 C 1.36659 * 126.10367 * 90.00051 * 3 2 1 9 9 C 1.46763 * 126.84815 * 0.02562 * 8 3 2 10 10 O 1.21683 * 119.99840 * 359.70991 * 9 8 3 11 11 N 1.34777 * 120.00153 * 179.71167 * 9 8 3 12 12 C 1.46498 * 119.99828 * 180.27869 * 11 9 8 13 13 H 1.09001 * 112.85160 * 25.05344 * 12 11 9 14 14 C 1.53784 * 113.61507 * 156.25317 * 12 11 9 15 15 C 1.53776 * 87.08293 * 139.97795 * 14 12 11 16 16 H 1.08992 * 113.61412 * 219.93513 * 15 14 12 17 17 N 1.46497 * 113.61357 * 89.11476 * 15 14 12 18 18 C 1.36943 * 120.00156 * 154.99957 * 17 15 14 19 19 H 1.08000 * 119.99347 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00499 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99863 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46935 * 60.00112 * 22 20 18 24 24 H 1.48501 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47342 * 300.00034 * 22 20 18 26 26 C 1.53781 * 113.61116 * 253.85697 * 12 11 9 27 27 H 1.09004 * 109.47325 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46752 * 299.99652 * 1 2 3 30 30 H 1.09005 * 109.46752 * 240.00348 * 2 1 3 31 31 H 1.08992 * 109.47690 * 120.00335 * 2 1 3 32 32 H 1.08003 * 125.41822 * 179.78313 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 34 34 H 1.09000 * 113.61297 * 254.52834 * 14 12 11 35 35 H 1.08999 * 113.61335 * 25.42565 * 14 12 11 36 36 H 0.97003 * 120.00503 * 334.99771 * 17 15 14 37 37 H 0.96997 * 120.00738 * 180.02562 * 21 20 18 38 38 H 1.08995 * 113.61680 * 334.57196 * 26 12 11 39 39 H 1.09006 * 113.61326 * 105.47146 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2921 2.1623 -1.0771 5 6 2.7168 3.3435 -0.7071 6 7 2.7399 3.4035 0.6363 7 1 3.0128 4.1626 1.1750 8 6 2.3008 2.1800 1.1041 9 6 2.1579 1.7742 2.5073 10 8 1.7580 0.6578 2.7800 11 7 2.4695 2.6380 3.4938 12 6 2.3326 2.2308 4.8943 13 1 2.4019 1.1515 5.0300 14 6 3.2238 3.0314 5.8586 15 6 2.0362 3.0264 6.8355 16 1 1.8996 3.9712 7.3615 17 7 2.0189 1.8683 7.7324 18 6 1.3840 1.9492 8.9431 19 1 0.8958 2.8667 9.2364 20 6 1.3681 0.8520 9.7931 21 7 1.9628 -0.2664 9.4354 22 14 0.5027 0.9626 11.4449 23 1 -0.9340 1.2718 11.2312 24 1 0.6288 -0.3340 12.1576 25 1 1.1248 2.0378 12.2586 26 6 1.1252 2.8647 5.6049 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0030 4.1430 -1.3744 33 1 2.7887 3.5279 3.2763 34 1 4.0881 2.4737 6.2192 35 1 3.4828 4.0243 5.4911 36 1 2.4571 1.0440 7.4687 37 1 1.9513 -1.0333 10.0293 38 1 0.8093 3.8120 5.1680 39 1 0.2976 2.1727 5.7611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020993478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:07 Heat of formation + Delta-G solvation = 21.202291 kcal Electronic energy + Delta-G solvation = -21175.418907 eV Core-core repulsion = 17925.586805 eV Total energy + Delta-G solvation = -3249.832101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.23723 -40.91188 -39.26058 -35.92906 -35.23044 -34.24321 -32.95172 -31.67724 -30.04825 -26.57195 -26.48330 -25.37737 -24.34966 -23.51883 -22.13826 -21.01070 -20.18018 -19.53204 -19.31464 -17.43177 -17.17875 -16.69074 -16.64639 -15.85918 -15.80415 -15.43776 -15.35547 -14.98301 -14.83121 -14.42254 -14.31356 -13.64730 -13.36555 -13.32374 -13.30921 -12.77063 -12.64686 -12.42968 -12.22607 -12.01757 -11.82291 -11.73969 -11.46919 -11.36636 -11.02564 -10.91998 -10.80334 -10.14164 -9.52392 -9.03715 -7.96013 -5.26006 0.25015 1.47146 1.50575 1.56591 1.86510 1.87763 2.17789 2.23262 2.55123 3.35688 3.50849 3.60173 3.76277 3.81784 3.87752 4.07373 4.21667 4.28109 4.32944 4.47360 4.53140 4.65541 4.73055 4.77639 4.79866 4.97605 5.05285 5.12612 5.17788 5.24328 5.27364 5.29486 5.49173 5.51575 5.63823 6.26053 6.36176 6.48067 6.93504 7.13243 7.30994 8.07220 8.28054 9.27212 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003376 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.109072 B = 8292.854196 C = 8870.948178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 C 0.083 3.917 4 N -0.534 5.534 5 C 0.243 3.757 6 N -0.538 5.538 7 H 0.441 0.559 8 C -0.105 4.105 9 C 0.586 3.414 10 O -0.564 6.564 11 N -0.698 5.698 12 C 0.133 3.867 13 H 0.073 0.927 14 C -0.137 4.137 15 C 0.151 3.849 16 H 0.080 0.920 17 N -0.723 5.723 18 C -0.246 4.246 19 H 0.082 0.918 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.171 4.171 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.267 0.733 33 H 0.412 0.588 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 13.491 -21.066 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.051 4.051 4 N -0.254 5.254 5 C -0.042 4.042 6 N -0.144 5.144 7 H 0.284 0.716 8 C -0.222 4.222 9 C 0.373 3.627 10 O -0.443 6.443 11 N -0.349 5.349 12 C 0.029 3.971 13 H 0.091 0.909 14 C -0.176 4.176 15 C 0.040 3.960 16 H 0.098 0.902 17 N -0.361 5.361 18 C -0.378 4.378 19 H 0.100 0.900 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.213 4.213 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.282 0.718 33 H 0.249 0.751 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.203 0.797 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.886 12.504 -21.449 24.995 hybrid contribution -0.003 0.127 1.906 1.911 sum 2.882 12.631 -19.543 23.447 Atomic orbital electron populations 1.21537 0.94004 1.02317 1.00902 1.20022 0.96638 0.89370 1.03006 1.21150 0.99172 0.97255 0.87564 1.70123 1.20383 1.04401 1.30523 1.26146 0.98042 0.97643 0.82326 1.43206 1.49544 1.12628 1.09065 0.71627 1.20628 1.17602 0.90166 0.93755 1.17232 0.77124 0.84610 0.83688 1.90844 1.47900 1.21997 1.83553 1.45703 1.67080 1.16818 1.05252 1.22255 0.97785 0.98700 0.78403 0.90870 1.23741 0.97206 1.01527 0.95122 1.21279 0.94780 0.90966 0.88991 0.90220 1.42390 1.64512 1.11955 1.17212 1.19681 1.26251 0.97878 0.93983 0.89983 1.25627 1.02635 0.95871 1.02774 1.69824 1.50264 1.03378 1.38670 0.85183 0.78449 0.76385 0.79563 1.20490 1.22457 1.19887 1.24217 0.97217 1.00827 0.99011 0.92236 0.91150 0.94618 0.89799 0.90906 0.71764 0.75121 0.91900 0.85448 0.79656 0.94023 0.87719 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.89 71.98 0.71 -2.50 16 2 C -0.05 -1.37 5.93 29.85 0.18 -1.19 16 3 C 0.08 2.13 6.40 41.97 0.27 2.40 16 4 N -0.53 -11.56 11.20 -187.59 -2.10 -13.66 16 5 C 0.24 2.82 13.01 180.33 2.35 5.17 16 6 N -0.54 -6.37 6.07 -188.04 -1.14 -7.51 16 7 H 0.44 1.49 8.32 -92.71 -0.77 0.72 16 8 C -0.11 -2.43 7.08 40.01 0.28 -2.15 16 9 C 0.59 17.04 7.79 86.47 0.67 17.71 16 10 O -0.56 -21.96 14.44 -4.29 -0.06 -22.02 16 11 N -0.70 -16.31 5.36 -443.91 -2.38 -18.69 16 12 C 0.13 4.17 4.09 45.52 0.19 4.36 16 13 H 0.07 2.99 7.50 -2.39 -0.02 2.97 16 14 C -0.14 -3.79 7.58 31.12 0.24 -3.55 16 15 C 0.15 5.53 4.57 45.58 0.21 5.74 16 16 H 0.08 2.75 8.10 -2.39 -0.02 2.73 16 17 N -0.72 -36.30 5.31 -320.18 -1.70 -37.99 16 18 C -0.25 -13.61 9.97 84.03 0.84 -12.77 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 21 N -0.97 -60.55 13.06 21.65 0.28 -60.26 16 22 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.17 -5.66 7.69 31.18 0.24 -5.42 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.07 2.24 6.48 -2.39 -0.02 2.22 16 32 H 0.27 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.41 5.65 7.95 -92.71 -0.74 4.92 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.13 2.29 8.11 -2.39 -0.02 2.27 16 36 H 0.37 20.50 7.90 -92.71 -0.73 19.76 16 37 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -79.68 331.35 0.42 -79.27 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -1.14 Total: 28.77 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.63 Total: 3.82 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -7.04 Total: -138.12 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -79.68 0.42 -79.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020993478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.469 kcal (2) G-P(sol) polarization free energy of solvation -79.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds