Wall clock time and date at job start Tue Mar 31 2020 00:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38050 * 126.28760 * 2 1 4 4 C 1.47429 * 126.41583 * 0.02562 * 3 2 1 5 5 O 1.21600 * 119.99755 * 359.71080 * 4 3 2 6 6 N 1.34774 * 119.99748 * 179.70872 * 4 3 2 7 7 C 1.46500 * 119.99592 * 179.97438 * 6 4 3 8 8 H 1.08997 * 112.85281 * 336.19637 * 7 6 4 9 9 C 1.53787 * 113.68866 * 107.46868 * 7 6 4 10 10 C 1.53782 * 87.07838 * 139.98926 * 9 7 6 11 11 H 1.09000 * 113.68990 * 89.13281 * 10 9 7 12 12 N 1.46498 * 113.61164 * 220.01529 * 10 9 7 13 13 C 1.36935 * 120.00239 * 252.49830 * 12 10 9 14 14 H 1.08004 * 120.00069 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00368 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99540 * 359.72375 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72253 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72375 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72186 * 17 15 13 21 21 C 1.53776 * 87.08702 * 334.56608 * 10 9 7 22 22 C 1.41287 * 107.16625 * 179.75967 * 3 2 1 23 23 N 1.30445 * 108.02764 * 0.24229 * 22 3 2 24 24 N 1.34257 * 126.29590 * 180.17803 * 2 1 3 25 25 C 1.46507 * 125.75211 * 359.96185 * 24 2 1 26 26 H 1.09001 * 109.47429 * 90.00075 * 1 2 3 27 27 H 1.09000 * 109.46980 * 209.99652 * 1 2 3 28 28 H 1.08994 * 109.47500 * 329.99820 * 1 2 3 29 29 H 0.97004 * 120.00125 * 0.02562 * 6 4 3 30 30 H 1.08992 * 113.61401 * 25.44453 * 9 7 6 31 31 H 1.08995 * 113.61538 * 254.53908 * 9 7 6 32 32 H 0.97004 * 119.99747 * 72.50570 * 12 10 9 33 33 H 0.97000 * 120.00481 * 0.27542 * 16 15 13 34 34 H 1.09002 * 113.61801 * 139.97581 * 21 10 9 35 35 H 1.09001 * 113.61851 * 270.88994 * 21 10 9 36 36 H 1.08002 * 125.98947 * 180.24327 * 22 3 2 37 37 H 1.08998 * 109.46786 * 270.30870 * 25 24 2 38 38 H 1.09003 * 109.46750 * 30.30660 * 25 24 2 39 39 H 1.09003 * 109.47033 * 150.30488 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1128 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6994 2.7877 -0.0043 6 7 2.7997 3.5107 0.0064 7 6 2.3641 4.9095 0.0064 8 1 1.3628 5.0410 -0.4037 9 6 2.5776 5.6231 1.3518 10 6 3.0138 6.8542 0.5400 11 1 2.1910 7.5184 0.2755 12 7 4.1550 7.5658 1.1209 13 6 3.9691 8.7807 1.7248 14 1 2.9810 9.2141 1.7732 15 6 5.0504 9.4553 2.2747 16 7 6.2537 8.9245 2.2206 17 14 4.7967 11.1122 3.0991 18 1 6.0977 11.6167 3.6073 19 1 4.2428 12.0756 2.1140 20 1 3.8479 10.9615 4.2314 21 6 3.4032 5.8783 -0.5828 22 6 3.6589 0.6499 0.0057 23 7 3.6340 -0.6543 0.0036 24 7 2.3017 -1.0821 -0.0034 25 6 1.8502 -2.4758 -0.0069 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.7460 3.2974 0.0099 30 1 3.3773 5.1910 1.9532 31 1 1.6575 5.7757 1.9159 32 1 5.0424 7.1765 1.0777 33 1 6.3855 8.0640 1.7928 34 1 3.1495 6.2367 -1.5804 35 1 4.4285 5.5157 -0.5102 36 1 4.5448 1.2677 0.0108 37 1 1.7335 -2.8225 1.0199 38 1 0.8938 -2.5465 -0.5252 39 1 2.5872 -3.0952 -0.5181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021842756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:43 Heat of formation + Delta-G solvation = 69.122441 kcal Electronic energy + Delta-G solvation = -20888.419005 eV Core-core repulsion = 17640.664877 eV Total energy + Delta-G solvation = -3247.754128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -41.67614 -39.51754 -37.78487 -34.37447 -33.93379 -32.68935 -32.14798 -29.64714 -27.75836 -27.12959 -25.15216 -24.27845 -23.05913 -21.89319 -20.48095 -20.05531 -19.13972 -17.62740 -17.36221 -16.14475 -16.02595 -15.82902 -14.96660 -14.75680 -14.48974 -14.24343 -13.72956 -13.58931 -13.46488 -13.37389 -13.01028 -12.90140 -12.77284 -12.43196 -12.16913 -11.95888 -11.10757 -10.97500 -10.83355 -10.58586 -10.45625 -10.25854 -9.94620 -9.70593 -9.65909 -9.14711 -8.94730 -8.87864 -8.59328 -7.03716 -6.11242 -3.11115 1.30964 1.99830 2.04584 3.41382 3.47959 3.52964 3.56303 3.73632 4.14788 4.29102 4.61599 4.68798 4.69125 4.81282 4.93919 5.01256 5.08176 5.21371 5.24811 5.27012 5.35583 5.51761 5.60323 5.77131 5.85293 5.86730 6.09977 6.17954 6.19704 6.27641 6.50277 6.56081 6.59391 6.75022 7.04089 7.28773 7.73132 7.81514 8.41313 8.74608 9.21108 10.07502 10.22263 11.36964 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039577 B = 0.002942 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.308947 B = 9515.220594 C = 9867.646058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 C -0.296 4.296 4 C 0.594 3.406 5 O -0.554 6.554 6 N -0.711 5.711 7 C 0.122 3.878 8 H 0.110 0.890 9 C -0.176 4.176 10 C 0.174 3.826 11 H 0.081 0.919 12 N -0.722 5.722 13 C -0.334 4.334 14 H 0.066 0.934 15 C -0.045 4.045 16 N -0.944 5.944 17 Si 1.080 2.920 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.295 1.295 21 C -0.161 4.161 22 C 0.085 3.915 23 N -0.300 5.300 24 N -0.367 5.367 25 C 0.096 3.904 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.397 0.603 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.368 0.632 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.190 0.810 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -22.259 -6.524 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.023 3.977 3 C -0.311 4.311 4 C 0.382 3.618 5 O -0.433 6.433 6 N -0.359 5.359 7 C 0.018 3.982 8 H 0.128 0.872 9 C -0.218 4.218 10 C 0.061 3.939 11 H 0.099 0.901 12 N -0.362 5.362 13 C -0.465 4.465 14 H 0.084 0.916 15 C -0.243 4.243 16 N -0.589 5.589 17 Si 0.911 3.089 18 H -0.211 1.211 19 H -0.222 1.222 20 H -0.222 1.222 21 C -0.200 4.200 22 C -0.103 4.103 23 N -0.119 5.119 24 N -0.147 5.147 25 C -0.045 4.045 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.231 0.769 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.202 0.798 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.207 0.793 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.382 -21.887 -5.704 24.487 hybrid contribution -0.380 -0.965 -0.761 1.286 sum -9.762 -22.852 -6.465 25.677 Atomic orbital electron populations 1.20688 0.86032 1.04899 1.04102 1.21539 0.94936 0.86259 0.94997 1.20087 0.92838 0.93804 1.24333 1.17195 0.85593 0.83595 0.75399 1.90705 1.16576 1.84314 1.51736 1.45789 1.09252 1.06061 1.74837 1.22440 0.99218 0.77838 0.98748 0.87164 1.24318 1.01460 0.99500 0.96543 1.21296 0.91622 0.89990 0.90972 0.90121 1.42366 1.04689 1.21431 1.67666 1.20113 0.96177 0.96693 1.33557 0.91584 1.25801 0.92459 1.05163 1.00838 1.70893 1.21762 1.19400 1.46831 0.83241 0.75250 0.74654 0.75779 1.21050 1.22209 1.22224 1.23880 0.98719 0.97412 1.00037 1.24056 0.97348 0.91977 0.96938 1.77183 0.95967 1.13330 1.25415 1.48364 1.04137 1.06343 1.55821 1.21951 1.01292 0.77411 1.03810 0.89572 0.91224 0.87315 0.76867 0.90386 0.92166 0.79845 0.93425 0.91430 0.90166 0.79297 0.90305 0.89165 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.34 36.00 0.34 -0.50 16 2 C 0.15 1.70 7.01 -81.60 -0.57 1.13 16 3 C -0.30 -3.73 6.13 -105.07 -0.64 -4.37 16 4 C 0.59 8.65 7.81 -12.52 -0.10 8.55 16 5 O -0.55 -9.46 14.44 5.28 0.08 -9.39 16 6 N -0.71 -9.58 5.35 -54.08 -0.29 -9.87 16 7 C 0.12 1.87 4.24 -67.11 -0.28 1.59 16 8 H 0.11 1.75 7.46 -51.93 -0.39 1.36 16 9 C -0.18 -3.15 7.68 -25.91 -0.20 -3.35 16 10 C 0.17 3.44 4.48 -67.12 -0.30 3.14 16 11 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 12 N -0.72 -17.95 5.40 -52.64 -0.28 -18.24 16 13 C -0.33 -9.41 9.97 -15.06 -0.15 -9.56 16 14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 15 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 16 N -0.94 -29.13 13.70 55.49 0.76 -28.37 16 17 Si 1.08 25.96 29.92 -169.99 -5.09 20.87 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.16 -2.55 7.58 -25.92 -0.20 -2.75 16 22 C 0.08 0.95 11.50 -16.98 -0.20 0.76 16 23 N -0.30 -3.58 12.50 30.86 0.39 -3.19 16 24 N -0.37 -3.67 3.98 -63.33 -0.25 -3.92 16 25 C 0.10 0.50 11.06 59.85 0.66 1.16 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.39 7.71 -51.93 -0.40 -0.01 16 28 H 0.11 1.16 6.51 -51.93 -0.34 0.82 16 29 H 0.40 4.45 7.68 -40.82 -0.31 4.14 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.37 9.34 6.76 -40.82 -0.28 9.06 16 33 H 0.25 7.69 6.77 -40.82 -0.28 7.42 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.19 1.57 7.50 -52.49 -0.39 1.17 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.26 7.64 -51.93 -0.40 -0.14 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -35.56 329.80 -6.82 -42.39 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.37 Total: 10.36 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.74 Total: -5.61 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.32 Total: -63.59 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.56 -6.82 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021842756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.508 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds