Wall clock time and date at job start Tue Mar 31 2020 00:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38050 * 126.28760 * 2 1 4 4 C 1.47429 * 126.41583 * 0.02562 * 3 2 1 5 5 O 1.21600 * 119.99755 * 359.71080 * 4 3 2 6 6 N 1.34774 * 119.99748 * 179.70872 * 4 3 2 7 7 C 1.46500 * 119.99592 * 179.97438 * 6 4 3 8 8 H 1.08997 * 112.85281 * 336.19637 * 7 6 4 9 9 C 1.53787 * 113.68866 * 107.46868 * 7 6 4 10 10 C 1.53782 * 87.07838 * 139.98926 * 9 7 6 11 11 H 1.09000 * 113.68990 * 89.13281 * 10 9 7 12 12 N 1.46498 * 113.61164 * 220.01529 * 10 9 7 13 13 C 1.36935 * 120.00239 * 252.49830 * 12 10 9 14 14 H 1.08004 * 120.00069 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00368 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99540 * 359.72375 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72253 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72375 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72186 * 17 15 13 21 21 C 1.53776 * 87.08702 * 334.56608 * 10 9 7 22 22 C 1.41287 * 107.16625 * 179.75967 * 3 2 1 23 23 N 1.30445 * 108.02764 * 0.24229 * 22 3 2 24 24 N 1.34257 * 126.29590 * 180.17803 * 2 1 3 25 25 C 1.46507 * 125.75211 * 359.96185 * 24 2 1 26 26 H 1.09001 * 109.47429 * 90.00075 * 1 2 3 27 27 H 1.09000 * 109.46980 * 209.99652 * 1 2 3 28 28 H 1.08994 * 109.47500 * 329.99820 * 1 2 3 29 29 H 0.97004 * 120.00125 * 0.02562 * 6 4 3 30 30 H 1.08992 * 113.61401 * 25.44453 * 9 7 6 31 31 H 1.08995 * 113.61538 * 254.53908 * 9 7 6 32 32 H 0.97004 * 119.99747 * 72.50570 * 12 10 9 33 33 H 0.97000 * 120.00481 * 0.27542 * 16 15 13 34 34 H 1.09002 * 113.61801 * 139.97581 * 21 10 9 35 35 H 1.09001 * 113.61851 * 270.88994 * 21 10 9 36 36 H 1.08002 * 125.98947 * 180.24327 * 22 3 2 37 37 H 1.08998 * 109.46786 * 270.30870 * 25 24 2 38 38 H 1.09003 * 109.46750 * 30.30660 * 25 24 2 39 39 H 1.09003 * 109.47033 * 150.30488 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1128 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6994 2.7877 -0.0043 6 7 2.7997 3.5107 0.0064 7 6 2.3641 4.9095 0.0064 8 1 1.3628 5.0410 -0.4037 9 6 2.5776 5.6231 1.3518 10 6 3.0138 6.8542 0.5400 11 1 2.1910 7.5184 0.2755 12 7 4.1550 7.5658 1.1209 13 6 3.9691 8.7807 1.7248 14 1 2.9810 9.2141 1.7732 15 6 5.0504 9.4553 2.2747 16 7 6.2537 8.9245 2.2206 17 14 4.7967 11.1122 3.0991 18 1 6.0977 11.6167 3.6073 19 1 4.2428 12.0756 2.1140 20 1 3.8479 10.9615 4.2314 21 6 3.4032 5.8783 -0.5828 22 6 3.6589 0.6499 0.0057 23 7 3.6340 -0.6543 0.0036 24 7 2.3017 -1.0821 -0.0034 25 6 1.8502 -2.4758 -0.0069 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.7460 3.2974 0.0099 30 1 3.3773 5.1910 1.9532 31 1 1.6575 5.7757 1.9159 32 1 5.0424 7.1765 1.0777 33 1 6.3855 8.0640 1.7928 34 1 3.1495 6.2367 -1.5804 35 1 4.4285 5.5157 -0.5102 36 1 4.5448 1.2677 0.0108 37 1 1.7335 -2.8225 1.0199 38 1 0.8938 -2.5465 -0.5252 39 1 2.5872 -3.0952 -0.5181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021842756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:38 Heat of formation + Delta-G solvation = 43.387254 kcal Electronic energy + Delta-G solvation = -20889.534966 eV Core-core repulsion = 17640.664877 eV Total energy + Delta-G solvation = -3248.870089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -42.50019 -40.78093 -39.13887 -36.08522 -34.89195 -34.01093 -32.92395 -31.53790 -28.62005 -27.74291 -26.58839 -26.07961 -24.49409 -23.07106 -21.43903 -21.21036 -20.37057 -19.43836 -18.54610 -17.42106 -16.88600 -16.74848 -16.55578 -15.79930 -15.67716 -15.51617 -15.45964 -15.09138 -14.39513 -14.15152 -14.04138 -13.68867 -13.50642 -13.40939 -13.36559 -13.08654 -12.85067 -12.64776 -12.16980 -12.11852 -11.88943 -11.84311 -11.78471 -11.18509 -10.87593 -10.79957 -10.42754 -10.06256 -9.60106 -9.07865 -8.38034 -5.31721 0.46428 1.10276 1.38776 1.59973 1.69648 1.85968 2.31758 2.42661 2.73561 3.38875 3.47493 3.58180 3.64729 3.80982 3.87742 3.95959 3.99684 4.14254 4.25615 4.36722 4.40393 4.47670 4.61728 4.66123 4.71194 4.81799 4.84329 4.92905 5.06377 5.10162 5.12926 5.35775 5.37776 5.60816 5.67694 5.87379 6.45958 6.51617 6.66575 7.10746 7.31193 8.01401 8.12500 9.14032 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039577 B = 0.002942 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.308947 B = 9515.220594 C = 9867.646058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.156 3.844 3 C -0.326 4.326 4 C 0.594 3.406 5 O -0.584 6.584 6 N -0.704 5.704 7 C 0.143 3.857 8 H 0.109 0.891 9 C -0.170 4.170 10 C 0.154 3.846 11 H 0.077 0.923 12 N -0.736 5.736 13 C -0.334 4.334 14 H 0.067 0.933 15 C -0.105 4.105 16 N -0.976 5.976 17 Si 1.127 2.873 18 H -0.293 1.293 19 H -0.277 1.277 20 H -0.280 1.280 21 C -0.141 4.141 22 C 0.085 3.915 23 N -0.324 5.324 24 N -0.363 5.363 25 C 0.083 3.917 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.409 0.591 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.362 0.638 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.210 0.790 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -23.703 -7.072 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.022 3.978 3 C -0.341 4.341 4 C 0.384 3.616 5 O -0.466 6.466 6 N -0.353 5.353 7 C 0.037 3.963 8 H 0.127 0.873 9 C -0.212 4.212 10 C 0.044 3.956 11 H 0.095 0.905 12 N -0.376 5.376 13 C -0.466 4.466 14 H 0.085 0.915 15 C -0.296 4.296 16 N -0.624 5.624 17 Si 0.951 3.049 18 H -0.219 1.219 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.180 4.180 22 C -0.103 4.103 23 N -0.144 5.144 24 N -0.142 5.142 25 C -0.056 4.056 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.246 0.754 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.195 0.805 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.227 0.773 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.440 -23.402 -6.281 26.384 hybrid contribution -0.151 -0.662 -0.612 0.914 sum -10.591 -24.064 -6.894 27.180 Atomic orbital electron populations 1.20722 0.84383 1.05318 1.04929 1.21916 0.96010 0.86237 0.93647 1.20062 0.93951 0.93118 1.26928 1.17478 0.85157 0.84441 0.74568 1.90687 1.17778 1.84873 1.53228 1.45644 1.09965 1.05119 1.74616 1.22081 0.99032 0.78783 0.96412 0.87266 1.24157 1.00666 0.98902 0.97505 1.21611 0.90409 0.90553 0.93045 0.90484 1.42518 1.05759 1.21080 1.68228 1.20456 0.96057 0.97610 1.32452 0.91533 1.27177 0.92132 1.08342 1.01950 1.70994 1.22944 1.19628 1.48833 0.82640 0.75099 0.71400 0.75721 1.21934 1.20255 1.20604 1.23684 0.99270 0.95738 0.99347 1.24394 0.97651 0.92065 0.96149 1.77135 0.97407 1.13599 1.26243 1.48731 1.03358 1.07701 1.54406 1.22392 1.02773 0.75053 1.05344 0.88417 0.87977 0.89656 0.75442 0.91313 0.92821 0.80509 0.94450 0.89828 0.89439 0.77305 0.88854 0.86434 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.34 71.24 0.67 -0.76 16 2 C 0.16 3.17 7.01 42.14 0.30 3.46 16 3 C -0.33 -7.88 6.13 -20.15 -0.12 -8.00 16 4 C 0.59 16.85 7.81 86.66 0.68 17.53 16 5 O -0.58 -19.74 14.44 -4.03 -0.06 -19.80 16 6 N -0.70 -18.22 5.35 -443.28 -2.37 -20.60 16 7 C 0.14 4.21 4.24 45.52 0.19 4.40 16 8 H 0.11 3.35 7.46 -2.39 -0.02 3.33 16 9 C -0.17 -6.06 7.68 31.12 0.24 -5.82 16 10 C 0.15 6.06 4.48 45.52 0.20 6.26 16 11 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 12 N -0.74 -36.87 5.40 -320.46 -1.73 -38.60 16 13 C -0.33 -18.87 9.97 84.03 0.84 -18.04 16 14 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 15 C -0.10 -6.12 5.50 84.86 0.47 -5.65 16 16 N -0.98 -61.13 13.70 21.65 0.30 -60.83 16 17 Si 1.13 52.25 29.92 68.60 2.05 54.30 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 C -0.14 -4.28 7.58 31.12 0.24 -4.05 16 22 C 0.08 1.81 11.50 85.65 0.99 2.79 16 23 N -0.32 -7.27 12.50 -56.28 -0.70 -7.97 16 24 N -0.36 -6.51 3.98 -354.29 -1.41 -7.92 16 25 C 0.08 0.62 11.06 127.77 1.41 2.04 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 0.82 7.71 -2.39 -0.02 0.80 16 28 H 0.08 1.75 6.51 -2.39 -0.02 1.74 16 29 H 0.41 8.62 7.68 -92.71 -0.71 7.91 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.36 18.70 6.76 -92.71 -0.63 18.07 16 33 H 0.25 15.18 6.77 -92.71 -0.63 14.55 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.57 8.10 -2.39 -0.02 2.55 16 36 H 0.21 3.19 7.50 -2.91 -0.02 3.16 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.12 0.24 7.64 -2.39 -0.02 0.22 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.01 329.80 2.05 -74.96 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.12 Total: 32.29 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 6.09 Total: -5.83 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -5.92 Total: -135.91 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.06 Total: -19.80 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Total: -77.01 2.05 -74.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021842756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.345 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds