Wall clock time and date at job start Tue Mar 31 2020 00:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.35361 * 126.38426 * 274.71757 * 3 2 1 5 5 C 1.41502 * 105.50120 * 179.86428 * 4 3 2 6 6 C 1.47708 * 126.52093 * 180.12900 * 5 4 3 7 7 O 1.21571 * 119.99908 * 0.29376 * 6 5 4 8 8 N 1.34777 * 120.00215 * 180.30029 * 6 5 4 9 9 C 1.46494 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08995 * 112.85325 * 23.79752 * 9 8 6 11 11 C 1.53783 * 113.61435 * 154.99777 * 9 8 6 12 12 C 1.53786 * 87.08274 * 139.97918 * 11 9 8 13 13 H 1.09004 * 113.61536 * 89.19706 * 12 11 9 14 14 N 1.46497 * 113.61751 * 220.01835 * 12 11 9 15 15 C 1.36934 * 119.99919 * 204.99977 * 14 12 11 16 16 H 1.07988 * 120.00393 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99692 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00233 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46846 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47452 * 119.99858 * 19 17 15 22 22 H 1.48498 * 109.47112 * 240.00095 * 19 17 15 23 23 C 1.53786 * 87.08030 * 334.56833 * 12 11 9 24 24 N 1.31815 * 106.96201 * 0.39891 * 5 4 3 25 25 N 1.28467 * 110.07221 * 359.74779 * 24 5 4 26 26 H 0.97004 * 124.88374 * 179.97438 * 25 24 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07994 * 127.24943 * 359.95714 * 4 3 2 33 33 H 0.97002 * 120.00108 * 359.97438 * 8 6 5 34 34 H 1.09005 * 113.61324 * 254.52545 * 11 9 8 35 35 H 1.08998 * 113.61854 * 25.43470 * 11 9 8 36 36 H 0.97002 * 119.99783 * 24.99873 * 14 12 11 37 37 H 0.96998 * 120.00439 * 179.97438 * 18 17 15 38 38 H 1.09006 * 113.61196 * 270.88540 * 23 12 11 39 39 H 1.08999 * 113.61372 * 139.97979 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2155 2.2078 -1.0860 5 6 2.6923 3.4415 -0.5831 6 6 3.0417 4.6379 -1.3758 7 8 2.9234 4.6212 -2.5856 8 7 3.4917 5.7479 -0.7579 9 6 3.8378 6.9346 -1.5441 10 1 3.3281 6.9679 -2.5069 11 6 3.7422 8.2485 -0.7507 12 6 5.0269 8.6868 -1.4734 13 1 4.8434 9.2008 -2.4170 14 7 5.9711 9.4011 -0.6107 15 6 6.8723 10.2749 -1.1579 16 1 6.8873 10.4372 -2.2254 17 6 7.7666 10.9522 -0.3403 18 7 7.7480 10.7549 0.9609 19 14 8.9955 12.1447 -1.0866 20 1 8.8118 12.1875 -2.5596 21 1 8.7767 13.5000 -0.5204 22 1 10.3754 11.6942 -0.7732 23 6 5.3510 7.1924 -1.6368 24 7 2.7709 3.3181 0.7269 25 7 2.3891 2.1443 1.0829 26 1 2.3615 1.8237 1.9980 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0343 1.9491 -2.1188 33 1 3.5859 5.7613 0.2075 34 1 2.8702 8.8506 -1.0065 35 1 3.8683 8.1197 0.3243 36 1 5.9579 9.2552 0.3482 37 1 8.3732 11.2279 1.5322 38 1 5.9169 6.7747 -0.8040 39 1 5.7779 6.9418 -2.6080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021848982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:19 Heat of formation + Delta-G solvation = 58.921639 kcal Electronic energy + Delta-G solvation = -20541.426719 eV Core-core repulsion = 17293.230252 eV Total energy + Delta-G solvation = -3248.196467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.89961 -39.58502 -37.77268 -34.73193 -34.00337 -32.73746 -31.87811 -29.91541 -29.49808 -25.21517 -25.05451 -24.17997 -23.77075 -21.64483 -21.31162 -20.09074 -19.08728 -17.93556 -17.16965 -16.78196 -16.02586 -15.98910 -14.88561 -14.66489 -14.51861 -14.42362 -14.10107 -13.88395 -13.59126 -13.00788 -12.94646 -12.74289 -12.10353 -12.04623 -11.84973 -11.65031 -11.23594 -11.02009 -10.91206 -10.63572 -10.45388 -10.28402 -10.03217 -9.84851 -9.59228 -9.58016 -9.21797 -8.87939 -8.66459 -6.95098 -5.77463 -3.06039 1.45653 1.89309 2.59191 3.34024 3.44062 3.46362 3.50296 3.52332 4.20613 4.30306 4.51191 4.61135 4.77857 5.00612 5.08283 5.14903 5.28631 5.30359 5.39780 5.43833 5.45344 5.51483 5.68464 5.73637 5.91202 5.99888 6.14466 6.19622 6.31683 6.37528 6.57072 6.66887 6.72284 6.80269 7.12551 7.53914 7.72218 7.81653 8.34822 8.41105 9.52426 10.09749 10.44318 11.45063 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044696 B = 0.002705 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.307003 B =10347.260602 C =10642.414647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.013 3.987 4 C -0.176 4.176 5 C -0.007 4.007 6 C 0.600 3.400 7 O -0.538 6.538 8 N -0.699 5.699 9 C 0.117 3.883 10 H 0.111 0.889 11 C -0.158 4.158 12 C 0.169 3.831 13 H 0.081 0.919 14 N -0.710 5.710 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.176 4.176 24 N -0.257 5.257 25 N -0.381 5.381 26 H 0.443 0.557 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.406 0.594 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.080 0.920 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 -22.097 0.793 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.204 4.204 5 C -0.168 4.168 6 C 0.384 3.616 7 O -0.413 6.413 8 N -0.349 5.349 9 C 0.012 3.988 10 H 0.129 0.871 11 C -0.198 4.198 12 C 0.056 3.944 13 H 0.099 0.901 14 N -0.348 5.348 15 C -0.373 4.373 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.218 4.218 24 N -0.093 5.093 25 N -0.095 5.095 26 H 0.288 0.712 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.179 0.821 33 H 0.241 0.759 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.655 -21.310 0.724 25.873 hybrid contribution 0.592 -0.079 0.388 0.713 sum -14.063 -21.389 1.112 25.622 Atomic orbital electron populations 1.21789 0.93989 1.02270 1.02723 1.20118 0.96457 0.88667 1.04026 1.21447 1.05577 0.96907 0.87357 1.21510 1.06785 0.92306 0.99773 1.22062 1.07850 0.97047 0.89832 1.16925 0.76956 0.81341 0.86372 1.90777 1.54554 1.82833 1.13167 1.45924 1.65076 1.12706 1.11163 1.22560 0.97436 0.82843 0.95957 0.87094 1.23868 1.00490 0.95053 1.00403 1.21359 0.88576 0.89985 0.94483 0.90142 1.42371 1.37600 1.48896 1.05969 1.19370 1.09510 1.15964 0.92445 0.90900 1.24774 1.00082 1.00737 0.95447 1.69670 1.39854 1.46073 1.02537 0.86102 0.81107 0.80720 0.78186 1.20468 1.21875 1.21888 1.24338 0.94153 1.01436 1.01859 1.73582 1.17991 1.02546 1.15200 1.43307 1.47609 1.08706 1.09859 0.71221 0.92686 0.91721 0.91805 0.90641 0.88982 0.82075 0.75937 0.91419 0.89919 0.78085 0.93540 0.90167 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.05 -0.25 6.49 -27.88 -0.18 -0.43 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -1.97 10.73 -39.36 -0.42 -2.39 16 5 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 6 C 0.60 9.53 7.82 -12.39 -0.10 9.43 16 7 O -0.54 -9.99 16.53 5.30 0.09 -9.90 16 8 N -0.70 -10.45 5.35 -54.00 -0.29 -10.74 16 9 C 0.12 1.87 4.24 -67.12 -0.28 1.58 16 10 H 0.11 1.81 7.46 -51.93 -0.39 1.42 16 11 C -0.16 -2.61 7.58 -25.92 -0.20 -2.81 16 12 C 0.17 3.37 4.48 -67.11 -0.30 3.07 16 13 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 14 N -0.71 -17.85 5.40 -52.64 -0.28 -18.13 16 15 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 C -0.18 -3.22 7.68 -25.91 -0.20 -3.41 16 24 N -0.26 -3.06 11.92 33.42 0.40 -2.67 16 25 N -0.38 -3.17 6.83 33.50 0.23 -2.95 16 26 H 0.44 2.06 8.96 -190.44 -1.71 0.35 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.41 5.55 8.45 -40.82 -0.35 5.20 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 36 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 37 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -33.86 336.29 -8.73 -42.58 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.95 Total: 10.53 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.68 Total: -3.76 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.78 Total: -62.01 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.86 -8.73 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021848982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.504 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds