Wall clock time and date at job start Tue Mar 31 2020 00:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.35361 * 126.38426 * 274.71757 * 3 2 1 5 5 C 1.41502 * 105.50120 * 179.86428 * 4 3 2 6 6 C 1.47708 * 126.52093 * 180.12900 * 5 4 3 7 7 O 1.21571 * 119.99908 * 0.29376 * 6 5 4 8 8 N 1.34777 * 120.00215 * 180.30029 * 6 5 4 9 9 C 1.46494 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08995 * 112.85325 * 23.79752 * 9 8 6 11 11 C 1.53783 * 113.61435 * 154.99777 * 9 8 6 12 12 C 1.53786 * 87.08274 * 139.97918 * 11 9 8 13 13 H 1.09004 * 113.61536 * 89.19706 * 12 11 9 14 14 N 1.46497 * 113.61751 * 220.01835 * 12 11 9 15 15 C 1.36934 * 119.99919 * 204.99977 * 14 12 11 16 16 H 1.07988 * 120.00393 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99692 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00233 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46846 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47452 * 119.99858 * 19 17 15 22 22 H 1.48498 * 109.47112 * 240.00095 * 19 17 15 23 23 C 1.53786 * 87.08030 * 334.56833 * 12 11 9 24 24 N 1.31815 * 106.96201 * 0.39891 * 5 4 3 25 25 N 1.28467 * 110.07221 * 359.74779 * 24 5 4 26 26 H 0.97004 * 124.88374 * 179.97438 * 25 24 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07994 * 127.24943 * 359.95714 * 4 3 2 33 33 H 0.97002 * 120.00108 * 359.97438 * 8 6 5 34 34 H 1.09005 * 113.61324 * 254.52545 * 11 9 8 35 35 H 1.08998 * 113.61854 * 25.43470 * 11 9 8 36 36 H 0.97002 * 119.99783 * 24.99873 * 14 12 11 37 37 H 0.96998 * 120.00439 * 179.97438 * 18 17 15 38 38 H 1.09006 * 113.61196 * 270.88540 * 23 12 11 39 39 H 1.08999 * 113.61372 * 139.97979 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2155 2.2078 -1.0860 5 6 2.6923 3.4415 -0.5831 6 6 3.0417 4.6379 -1.3758 7 8 2.9234 4.6212 -2.5856 8 7 3.4917 5.7479 -0.7579 9 6 3.8378 6.9346 -1.5441 10 1 3.3281 6.9679 -2.5069 11 6 3.7422 8.2485 -0.7507 12 6 5.0269 8.6868 -1.4734 13 1 4.8434 9.2008 -2.4170 14 7 5.9711 9.4011 -0.6107 15 6 6.8723 10.2749 -1.1579 16 1 6.8873 10.4372 -2.2254 17 6 7.7666 10.9522 -0.3403 18 7 7.7480 10.7549 0.9609 19 14 8.9955 12.1447 -1.0866 20 1 8.8118 12.1875 -2.5596 21 1 8.7767 13.5000 -0.5204 22 1 10.3754 11.6942 -0.7732 23 6 5.3510 7.1924 -1.6368 24 7 2.7709 3.3181 0.7269 25 7 2.3891 2.1443 1.0829 26 1 2.3615 1.8237 1.9980 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0343 1.9491 -2.1188 33 1 3.5859 5.7613 0.2075 34 1 2.8702 8.8506 -1.0065 35 1 3.8683 8.1197 0.3243 36 1 5.9579 9.2552 0.3482 37 1 8.3732 11.2279 1.5322 38 1 5.9169 6.7747 -0.8040 39 1 5.7779 6.9418 -2.6080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021848982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:17 Heat of formation + Delta-G solvation = 34.132662 kcal Electronic energy + Delta-G solvation = -20542.501650 eV Core-core repulsion = 17293.230252 eV Total energy + Delta-G solvation = -3249.271398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.71413 -40.92557 -39.21756 -35.80066 -35.23588 -34.25833 -32.85825 -31.74656 -30.25428 -26.75920 -26.51408 -25.43353 -24.63336 -23.10380 -22.05771 -21.33711 -20.54406 -19.14834 -18.67209 -17.89289 -17.48441 -16.86733 -16.36746 -16.10748 -15.60118 -15.44470 -15.27194 -14.96837 -14.79376 -14.47393 -14.17713 -13.63474 -13.32616 -13.29968 -13.15810 -12.85359 -12.50951 -12.22273 -12.18929 -12.09501 -12.05390 -11.78481 -11.72501 -11.52700 -11.15541 -10.86960 -10.49724 -9.99315 -9.96654 -8.98768 -7.94883 -5.23143 0.47761 1.09986 1.48391 1.48760 1.59077 1.86031 2.24590 2.32256 2.57595 3.35528 3.37058 3.67512 3.69834 3.84644 3.96802 3.99991 4.22260 4.31264 4.36071 4.42977 4.52783 4.68085 4.76460 4.81896 4.88502 4.89763 5.09069 5.12105 5.15026 5.21171 5.29975 5.35749 5.41251 5.51590 5.65775 6.09307 6.27488 6.46589 6.85320 7.13796 7.33791 8.09249 8.32865 9.28570 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044696 B = 0.002705 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.307003 B =10347.260602 C =10642.414647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.036 3.964 4 C -0.200 4.200 5 C -0.036 4.036 6 C 0.599 3.401 7 O -0.571 6.571 8 N -0.694 5.694 9 C 0.133 3.867 10 H 0.113 0.887 11 C -0.140 4.140 12 C 0.152 3.848 13 H 0.084 0.916 14 N -0.724 5.724 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.293 1.293 22 H -0.295 1.295 23 C -0.170 4.170 24 N -0.270 5.270 25 N -0.363 5.363 26 H 0.461 0.539 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.412 0.588 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.067 0.933 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 -23.762 0.936 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.090 4.090 4 C -0.228 4.228 5 C -0.196 4.196 6 C 0.385 3.615 7 O -0.449 6.449 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.131 0.869 11 C -0.180 4.180 12 C 0.042 3.958 13 H 0.102 0.898 14 N -0.361 5.361 15 C -0.374 4.374 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.222 1.222 23 C -0.212 4.212 24 N -0.107 5.107 25 N -0.080 5.080 26 H 0.309 0.691 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.180 0.820 33 H 0.249 0.751 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.207 0.793 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.683 -23.003 0.862 27.854 hybrid contribution 0.824 0.299 0.355 0.946 sum -14.859 -22.704 1.217 27.161 Atomic orbital electron populations 1.21783 0.93589 1.03244 1.02057 1.20300 0.96592 0.86263 1.05837 1.21900 1.03113 0.97886 0.86124 1.21690 1.08011 0.92196 1.00890 1.21817 1.10173 0.97012 0.90573 1.17258 0.76141 0.81939 0.86198 1.90745 1.56041 1.83532 1.14620 1.45823 1.64810 1.12302 1.11397 1.22284 0.95491 0.83241 0.96161 0.86865 1.23679 0.99100 0.95026 1.00168 1.21665 0.89439 0.90171 0.94533 0.89812 1.42524 1.38377 1.49243 1.05977 1.19756 1.09429 1.15519 0.92743 0.90411 1.25575 1.02389 1.03057 0.95942 1.69817 1.40931 1.47535 1.03759 0.85077 0.78400 0.78258 0.78060 1.19015 1.22000 1.22239 1.24171 0.95834 0.99999 1.01199 1.73502 1.18608 1.04177 1.14452 1.43417 1.45880 1.07699 1.10995 0.69088 0.92787 0.89956 0.93088 0.88021 0.88005 0.82017 0.75124 0.89568 0.89768 0.79290 0.94039 0.91416 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 71.98 0.71 -0.18 16 2 C -0.05 -0.31 6.49 29.85 0.19 -0.12 16 3 C 0.04 0.52 6.48 41.40 0.27 0.79 16 4 C -0.20 -4.33 10.73 22.41 0.24 -4.09 16 5 C -0.04 -0.97 7.13 42.46 0.30 -0.66 16 6 C 0.60 19.04 7.82 86.75 0.68 19.72 16 7 O -0.57 -21.45 16.53 -3.94 -0.07 -21.52 16 8 N -0.69 -20.48 5.35 -443.04 -2.37 -22.85 16 9 C 0.13 4.19 4.24 45.52 0.19 4.38 16 10 H 0.11 3.60 7.46 -2.39 -0.02 3.58 16 11 C -0.14 -4.48 7.58 31.12 0.24 -4.24 16 12 C 0.15 6.04 4.48 45.52 0.20 6.24 16 13 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 14 N -0.72 -36.63 5.40 -320.44 -1.73 -38.36 16 15 C -0.24 -13.56 9.97 84.03 0.84 -12.72 16 16 H 0.08 4.18 7.83 -2.92 -0.02 4.15 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 18 N -0.97 -59.63 13.06 21.65 0.28 -59.34 16 19 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 C -0.17 -6.22 7.68 31.12 0.24 -5.98 16 24 N -0.27 -6.12 11.92 -48.17 -0.57 -6.70 16 25 N -0.36 -5.26 6.83 -47.93 -0.33 -5.59 16 26 H 0.46 2.97 8.96 -219.99 -1.97 1.00 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.41 11.08 8.45 -92.71 -0.78 10.30 16 34 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 36 H 0.37 20.22 7.92 -92.71 -0.73 19.49 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -73.34 336.29 -0.58 -73.92 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -2.40 Total: 32.72 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.57 Total: -0.88 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -4.72 Total: -132.85 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.34 -0.58 -73.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021848982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.054 kcal (2) G-P(sol) polarization free energy of solvation -73.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds