Wall clock time and date at job start Tue Mar 31 2020 00:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39678 * 126.07094 * 2 1 4 4 C 1.38407 * 105.35769 * 179.97438 * 3 2 1 5 5 C 1.47168 * 126.87906 * 180.02562 * 4 3 2 6 6 O 1.21628 * 119.99630 * 184.25129 * 5 4 3 7 7 N 1.34772 * 120.00152 * 4.25235 * 5 4 3 8 8 C 1.46501 * 120.00304 * 174.32650 * 7 5 4 9 9 H 1.08999 * 112.84552 * 23.80500 * 8 7 5 10 10 C 1.53784 * 113.61521 * 154.99725 * 8 7 5 11 11 C 1.53779 * 87.07705 * 89.20325 * 10 8 7 12 12 H 1.09002 * 113.61199 * 140.06786 * 11 10 8 13 13 N 1.46494 * 113.61570 * 270.87903 * 11 10 8 14 14 C 1.36932 * 120.00442 * 203.20013 * 13 11 10 15 15 H 1.08007 * 119.99605 * 0.27476 * 14 13 11 16 16 C 1.38816 * 120.00343 * 180.27893 * 14 13 11 17 17 N 1.31618 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47287 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47240 * 119.99487 * 18 16 14 21 21 H 1.48500 * 109.47268 * 239.99766 * 18 16 14 22 22 C 1.53777 * 87.17554 * 25.47544 * 11 10 8 23 23 N 1.36597 * 106.23343 * 0.26488 * 4 3 2 24 24 C 1.46496 * 125.18933 * 179.73943 * 23 4 3 25 25 N 1.28439 * 109.61867 * 359.54967 * 23 4 3 26 26 H 1.08999 * 109.47180 * 89.99322 * 1 2 3 27 27 H 1.09003 * 109.47200 * 209.99642 * 1 2 3 28 28 H 1.08999 * 109.46780 * 330.00002 * 1 2 3 29 29 H 1.08002 * 127.31872 * 359.97438 * 3 2 1 30 30 H 0.97004 * 119.99982 * 354.32634 * 7 5 4 31 31 H 1.08992 * 113.61606 * 334.65076 * 10 8 7 32 32 H 1.08999 * 113.60854 * 203.75276 * 10 8 7 33 33 H 0.97001 * 119.99621 * 23.47087 * 13 11 10 34 34 H 0.97005 * 119.99866 * 180.02562 * 17 16 14 35 35 H 1.08997 * 113.62126 * 89.07187 * 22 11 10 36 36 H 1.09003 * 113.60880 * 219.97678 * 22 11 10 37 37 H 1.08998 * 109.47690 * 84.24161 * 24 23 4 38 38 H 1.08994 * 109.47355 * 204.24439 * 24 23 4 39 39 H 1.09008 * 109.47254 * 324.24159 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6395 0.0006 5 6 4.8665 1.4282 0.0014 6 8 5.9429 0.8672 -0.0763 7 7 4.8116 2.7720 0.0881 8 6 6.0471 3.5491 0.2142 9 1 6.9190 3.0239 -0.1758 10 6 5.9202 4.9948 -0.2946 11 6 5.4766 5.3731 1.1284 12 1 5.8868 6.3213 1.4760 13 7 4.0310 5.2671 1.3401 14 6 3.4300 5.9890 2.3365 15 1 4.0213 6.6400 2.9635 16 6 2.0610 5.8841 2.5408 17 7 1.3405 5.0910 1.7765 18 14 1.2412 6.8695 3.8996 19 1 2.2637 7.6788 4.6102 20 1 0.2185 7.7703 3.3098 21 1 0.5898 5.9424 4.8595 22 6 6.2627 4.1455 1.6180 23 7 3.5173 -0.7223 -0.0051 24 6 4.6450 -1.6574 -0.0121 25 7 2.2775 -1.0578 0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 2.0207 2.1640 -0.0004 30 1 3.9539 3.2247 0.0670 31 1 5.1406 5.1269 -1.0447 32 1 6.8712 5.4392 -0.5882 33 1 3.5000 4.6824 0.7770 34 1 0.3837 5.0180 1.9191 35 1 7.3071 4.3582 1.8463 36 1 5.7592 3.5925 2.4110 37 1 4.9931 -1.8146 1.0087 38 1 4.3255 -2.6087 -0.4375 39 1 5.4555 -1.2448 -0.6130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021873411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:52 Heat of formation + Delta-G solvation = 78.412883 kcal Electronic energy + Delta-G solvation = -21970.489737 eV Core-core repulsion = 18723.138473 eV Total energy + Delta-G solvation = -3247.351264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.31501 -39.73447 -37.82975 -34.06707 -33.57886 -32.78555 -30.61681 -29.78576 -29.50739 -25.39323 -25.17651 -24.75102 -23.63008 -21.99319 -20.65698 -19.61977 -18.67263 -17.61149 -17.13834 -16.16715 -16.07586 -15.33226 -14.77876 -14.59894 -14.28337 -14.06594 -13.57681 -13.35773 -13.26369 -13.08188 -12.95345 -12.28342 -12.18237 -12.12279 -12.08857 -12.00590 -11.52340 -10.93971 -10.86026 -10.49155 -10.24226 -10.20064 -9.96555 -9.74249 -9.64720 -8.98732 -8.95206 -8.62129 -8.57248 -7.10437 -5.89988 -3.18475 1.48239 2.54489 2.76052 3.37656 3.39400 3.44598 3.45967 3.51853 4.49248 4.61898 4.77652 5.01882 5.18007 5.19492 5.22634 5.32474 5.39526 5.46831 5.55325 5.65066 5.80739 5.82227 5.88190 5.91653 6.08675 6.09472 6.16709 6.23280 6.27339 6.51638 6.65843 6.75950 6.76932 6.93721 7.04043 7.63623 7.75732 8.24174 8.29341 8.40037 9.40106 9.93325 10.26812 11.32928 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.006299 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.431704 B = 4444.374622 C = 6085.631904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.021 3.979 3 C -0.168 4.168 4 C -0.041 4.041 5 C 0.596 3.404 6 O -0.557 6.557 7 N -0.683 5.683 8 C 0.123 3.877 9 H 0.094 0.906 10 C -0.166 4.166 11 C 0.163 3.837 12 H 0.067 0.933 13 N -0.704 5.704 14 C -0.244 4.244 15 H 0.074 0.926 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.187 4.187 23 N -0.263 5.263 24 C 0.091 3.909 25 N -0.284 5.284 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.171 0.829 30 H 0.412 0.588 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.378 0.622 34 H 0.257 0.743 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -8.282 -5.466 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.135 4.135 3 C -0.196 4.196 4 C -0.169 4.169 5 C 0.382 3.618 6 O -0.436 6.436 7 N -0.336 5.336 8 C 0.018 3.982 9 H 0.112 0.888 10 C -0.206 4.206 11 C 0.051 3.949 12 H 0.085 0.915 13 N -0.344 5.344 14 C -0.375 4.375 15 H 0.092 0.908 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.740 3.260 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.229 4.229 23 N -0.051 5.051 24 C -0.049 4.049 25 N -0.118 5.118 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.188 0.812 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.213 0.787 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.448 -9.792 -5.358 12.420 hybrid contribution -1.002 1.274 0.694 1.763 sum 4.446 -8.517 -4.664 10.680 Atomic orbital electron populations 1.20085 0.86440 1.03344 1.02533 1.21992 0.97127 0.88755 1.05601 1.22424 0.90087 1.01131 1.06003 1.21360 0.95852 0.85150 1.14549 1.16870 0.86397 0.82377 0.76185 1.90717 1.29950 1.71045 1.51934 1.45556 1.10860 1.05031 1.72128 1.21882 0.86725 0.91316 0.98258 0.88767 1.23849 1.02134 0.94767 0.99854 1.21217 0.85975 0.95597 0.92078 0.91507 1.42212 1.00643 1.52419 1.39173 1.19309 0.90909 1.18964 1.08309 0.90802 1.24725 0.96303 0.99978 0.99519 1.69606 1.06173 1.41195 1.40897 0.86095 0.79325 0.79245 0.81344 1.20566 1.21787 1.21834 1.24356 1.00716 1.01304 0.96572 1.45413 1.04949 1.04241 1.50494 1.22228 0.85792 0.92303 1.04614 1.73059 0.89487 1.28012 1.21234 0.91064 0.91384 0.89967 0.81173 0.74898 0.90945 0.88923 0.78697 0.93335 0.90262 0.91010 0.90108 0.89141 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.45 36.01 0.38 -0.45 16 2 C 0.02 0.35 7.22 -82.47 -0.60 -0.25 16 3 C -0.17 -2.89 10.44 -38.98 -0.41 -3.30 16 4 C -0.04 -0.72 6.96 -82.06 -0.57 -1.30 16 5 C 0.60 10.72 7.79 -12.64 -0.10 10.62 16 6 O -0.56 -10.51 14.38 5.25 0.08 -10.44 16 7 N -0.68 -11.93 5.13 -54.04 -0.28 -12.21 16 8 C 0.12 2.01 4.36 -66.98 -0.29 1.72 16 9 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 10 C -0.17 -2.54 7.58 -25.92 -0.20 -2.74 16 11 C 0.16 3.04 4.55 -67.12 -0.31 2.74 16 12 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 13 N -0.70 -16.21 5.17 -52.64 -0.27 -16.48 16 14 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -25.66 13.06 55.49 0.72 -24.93 16 18 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C -0.19 -3.21 7.70 -25.78 -0.20 -3.41 16 23 N -0.26 -4.28 3.75 -63.88 -0.24 -4.51 16 24 C 0.09 1.12 10.69 59.84 0.64 1.76 16 25 N -0.28 -4.72 11.90 33.64 0.40 -4.32 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.17 2.97 7.58 -52.49 -0.40 2.57 16 30 H 0.41 7.54 5.19 -40.82 -0.21 7.32 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.38 8.87 5.36 -40.82 -0.22 8.65 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.33 6.57 -51.92 -0.34 0.99 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -30.28 327.11 -6.90 -37.18 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -5.33 Total: 15.83 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.89 Total: -1.47 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.34 Total: -62.46 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.28 -6.90 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021873411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.596 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds