Wall clock time and date at job start Tue Mar 31 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39678 * 126.07094 * 2 1 4 4 C 1.38407 * 105.35769 * 179.97438 * 3 2 1 5 5 C 1.47168 * 126.87906 * 180.02562 * 4 3 2 6 6 O 1.21628 * 119.99630 * 184.25129 * 5 4 3 7 7 N 1.34772 * 120.00152 * 4.25235 * 5 4 3 8 8 C 1.46501 * 120.00304 * 174.32650 * 7 5 4 9 9 H 1.08999 * 112.84552 * 23.80500 * 8 7 5 10 10 C 1.53784 * 113.61521 * 154.99725 * 8 7 5 11 11 C 1.53779 * 87.07705 * 89.20325 * 10 8 7 12 12 H 1.09002 * 113.61199 * 140.06786 * 11 10 8 13 13 N 1.46494 * 113.61570 * 270.87903 * 11 10 8 14 14 C 1.36932 * 120.00442 * 203.20013 * 13 11 10 15 15 H 1.08007 * 119.99605 * 0.27476 * 14 13 11 16 16 C 1.38816 * 120.00343 * 180.27893 * 14 13 11 17 17 N 1.31618 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47287 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47240 * 119.99487 * 18 16 14 21 21 H 1.48500 * 109.47268 * 239.99766 * 18 16 14 22 22 C 1.53777 * 87.17554 * 25.47544 * 11 10 8 23 23 N 1.36597 * 106.23343 * 0.26488 * 4 3 2 24 24 C 1.46496 * 125.18933 * 179.73943 * 23 4 3 25 25 N 1.28439 * 109.61867 * 359.54967 * 23 4 3 26 26 H 1.08999 * 109.47180 * 89.99322 * 1 2 3 27 27 H 1.09003 * 109.47200 * 209.99642 * 1 2 3 28 28 H 1.08999 * 109.46780 * 330.00002 * 1 2 3 29 29 H 1.08002 * 127.31872 * 359.97438 * 3 2 1 30 30 H 0.97004 * 119.99982 * 354.32634 * 7 5 4 31 31 H 1.08992 * 113.61606 * 334.65076 * 10 8 7 32 32 H 1.08999 * 113.60854 * 203.75276 * 10 8 7 33 33 H 0.97001 * 119.99621 * 23.47087 * 13 11 10 34 34 H 0.97005 * 119.99866 * 180.02562 * 17 16 14 35 35 H 1.08997 * 113.62126 * 89.07187 * 22 11 10 36 36 H 1.09003 * 113.60880 * 219.97678 * 22 11 10 37 37 H 1.08998 * 109.47690 * 84.24161 * 24 23 4 38 38 H 1.08994 * 109.47355 * 204.24439 * 24 23 4 39 39 H 1.09008 * 109.47254 * 324.24159 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6395 0.0006 5 6 4.8665 1.4282 0.0014 6 8 5.9429 0.8672 -0.0763 7 7 4.8116 2.7720 0.0881 8 6 6.0471 3.5491 0.2142 9 1 6.9190 3.0239 -0.1758 10 6 5.9202 4.9948 -0.2946 11 6 5.4766 5.3731 1.1284 12 1 5.8868 6.3213 1.4760 13 7 4.0310 5.2671 1.3401 14 6 3.4300 5.9890 2.3365 15 1 4.0213 6.6400 2.9635 16 6 2.0610 5.8841 2.5408 17 7 1.3405 5.0910 1.7765 18 14 1.2412 6.8695 3.8996 19 1 2.2637 7.6788 4.6102 20 1 0.2185 7.7703 3.3098 21 1 0.5898 5.9424 4.8595 22 6 6.2627 4.1455 1.6180 23 7 3.5173 -0.7223 -0.0051 24 6 4.6450 -1.6574 -0.0121 25 7 2.2775 -1.0578 0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 2.0207 2.1640 -0.0004 30 1 3.9539 3.2247 0.0670 31 1 5.1406 5.1269 -1.0447 32 1 6.8712 5.4392 -0.5882 33 1 3.5000 4.6824 0.7770 34 1 0.3837 5.0180 1.9191 35 1 7.3071 4.3582 1.8463 36 1 5.7592 3.5925 2.4110 37 1 4.9931 -1.8146 1.0087 38 1 4.3255 -2.6087 -0.4375 39 1 5.4555 -1.2448 -0.6130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021873411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:48 Heat of formation + Delta-G solvation = 58.503192 kcal Electronic energy + Delta-G solvation = -21971.353086 eV Core-core repulsion = 18723.138473 eV Total energy + Delta-G solvation = -3248.214613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -43.58326 -41.13039 -39.26365 -35.54947 -35.07708 -34.25140 -32.14076 -31.44206 -30.55953 -26.60468 -26.53572 -26.32291 -25.20597 -23.42980 -21.99431 -21.01391 -20.03493 -19.25598 -18.64683 -17.45441 -17.40265 -16.74513 -16.47893 -16.03372 -15.76724 -15.54335 -14.97051 -14.80921 -14.69490 -14.35047 -14.13705 -13.54795 -13.39471 -13.31153 -13.25722 -13.17318 -13.13790 -12.81274 -12.54380 -12.08953 -11.77844 -11.75697 -11.71833 -11.20906 -11.14098 -10.80490 -10.31283 -9.94985 -9.82995 -8.97481 -7.91839 -5.18912 0.13333 1.33973 1.48800 1.50032 1.51998 1.59824 2.04740 2.19137 2.58563 3.38002 3.42460 3.47982 3.67625 3.85915 3.99281 4.05360 4.26595 4.30130 4.32613 4.37702 4.43130 4.58514 4.67386 4.80803 4.86806 4.90724 4.96329 5.01039 5.07888 5.10395 5.24490 5.35118 5.50860 5.55199 5.67913 5.74923 6.30497 6.36141 6.92516 7.02619 7.38269 8.10409 8.33374 9.30895 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.006299 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.431704 B = 4444.374622 C = 6085.631904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.014 3.986 3 C -0.182 4.182 4 C -0.057 4.057 5 C 0.595 3.405 6 O -0.568 6.568 7 N -0.685 5.685 8 C 0.121 3.879 9 H 0.106 0.894 10 C -0.143 4.143 11 C 0.144 3.856 12 H 0.071 0.929 13 N -0.716 5.716 14 C -0.245 4.245 15 H 0.075 0.925 16 C -0.064 4.064 17 N -0.955 5.955 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.293 1.293 21 H -0.299 1.299 22 C -0.177 4.177 23 N -0.264 5.264 24 C 0.084 3.916 25 N -0.289 5.289 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.161 0.839 30 H 0.406 0.594 31 H 0.066 0.934 32 H 0.131 0.869 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.111 0.889 36 H 0.039 0.961 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -8.395 -5.740 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C -0.211 4.211 4 C -0.185 4.185 5 C 0.381 3.619 6 O -0.448 6.448 7 N -0.336 5.336 8 C 0.016 3.984 9 H 0.124 0.876 10 C -0.183 4.183 11 C 0.034 3.966 12 H 0.089 0.911 13 N -0.357 5.357 14 C -0.377 4.377 15 H 0.093 0.907 16 C -0.257 4.257 17 N -0.605 5.605 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.221 1.221 21 H -0.226 1.226 22 C -0.219 4.219 23 N -0.051 5.051 24 C -0.054 4.054 25 N -0.124 5.124 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.179 0.821 30 H 0.245 0.755 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.207 0.793 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.512 -9.899 -5.634 13.120 hybrid contribution -1.226 1.298 0.780 1.948 sum 5.286 -8.601 -4.854 11.202 Atomic orbital electron populations 1.20186 0.84224 1.03855 1.03909 1.22515 0.98641 0.88150 1.04887 1.22441 0.90607 1.01161 1.06874 1.21414 0.95743 0.86042 1.15322 1.16953 0.86433 0.82523 0.75971 1.90697 1.30261 1.71217 1.52667 1.45643 1.11101 1.05038 1.71818 1.22020 0.86560 0.91975 0.97831 0.87616 1.23768 1.03599 0.93544 0.97339 1.21521 0.83850 0.96356 0.94921 0.91112 1.42342 1.02588 1.52150 1.38581 1.19610 0.91168 1.18429 1.08492 0.90742 1.25388 0.97097 1.01522 1.01742 1.69723 1.05929 1.42615 1.42256 0.85208 0.78348 0.77883 0.79056 1.19583 1.22061 1.22610 1.24281 1.01846 0.99829 0.95945 1.45779 1.05570 1.04212 1.49578 1.22491 0.84828 0.92737 1.05391 1.73059 0.89741 1.28081 1.21490 0.89209 0.90115 0.90145 0.82129 0.75513 0.91539 0.85047 0.79321 0.93864 0.87058 0.94248 0.89248 0.86429 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.55 10.45 71.24 0.74 -0.81 16 2 C 0.01 0.44 7.22 43.05 0.31 0.75 16 3 C -0.18 -6.40 10.44 22.66 0.24 -6.17 16 4 C -0.06 -2.00 6.96 40.79 0.28 -1.72 16 5 C 0.59 21.34 7.79 86.59 0.67 22.01 16 6 O -0.57 -21.02 14.38 -4.12 -0.06 -21.08 16 7 N -0.68 -23.83 5.13 -443.12 -2.27 -26.10 16 8 C 0.12 3.73 4.36 45.61 0.20 3.93 16 9 H 0.11 3.08 7.41 -2.39 -0.02 3.06 16 10 C -0.14 -4.03 7.58 31.12 0.24 -3.80 16 11 C 0.14 5.15 4.55 45.52 0.21 5.35 16 12 H 0.07 2.47 8.11 -2.39 -0.02 2.45 16 13 N -0.72 -33.00 5.17 -320.46 -1.66 -34.66 16 14 C -0.25 -12.81 9.97 84.04 0.84 -11.97 16 15 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 16 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 17 N -0.96 -53.57 13.06 21.65 0.28 -53.29 16 18 Si 0.96 44.37 29.55 68.60 2.03 46.40 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 22 C -0.18 -5.80 7.70 31.21 0.24 -5.55 16 23 N -0.26 -8.40 3.75 -356.03 -1.33 -9.73 16 24 C 0.08 1.98 10.69 127.77 1.37 3.35 16 25 N -0.29 -9.39 11.90 -47.49 -0.57 -9.96 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.16 5.89 7.58 -2.91 -0.02 5.86 16 30 H 0.41 15.18 5.19 -92.71 -0.48 14.70 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.37 17.77 5.36 -92.71 -0.50 17.27 16 34 H 0.25 13.83 8.31 -92.70 -0.77 13.05 16 35 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.10 2.50 6.57 -2.38 -0.02 2.48 16 Total: -1.00 -64.32 327.11 2.33 -61.99 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: 0.10 Total: 44.03 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.80 Total: 2.39 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -5.54 Total: -133.73 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.08 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.32 2.33 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021873411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.491 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds