Wall clock time and date at job start Tue Mar 31 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35357 * 126.38627 * 2 1 4 4 C 1.41500 * 105.50493 * 179.86848 * 3 2 1 5 5 C 1.47712 * 126.52114 * 180.13186 * 4 3 2 6 6 O 1.21567 * 119.99934 * 0.28802 * 5 4 3 7 7 N 1.34777 * 119.99959 * 180.29615 * 5 4 3 8 8 C 1.46506 * 119.99827 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.84702 * 23.79745 * 8 7 5 10 10 C 1.53779 * 113.61467 * 154.99815 * 8 7 5 11 11 C 1.53780 * 87.07991 * 139.97993 * 10 8 7 12 12 H 1.08997 * 113.61663 * 89.11906 * 11 10 8 13 13 N 1.46504 * 113.61436 * 220.01853 * 11 10 8 14 14 C 1.36935 * 120.00106 * 205.00126 * 13 11 10 15 15 H 1.07993 * 120.00145 * 359.97438 * 14 13 11 16 16 C 1.38818 * 119.99797 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99753 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47088 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46885 * 120.00018 * 18 16 14 21 21 H 1.48498 * 109.47073 * 240.00053 * 18 16 14 22 22 C 1.53774 * 87.08306 * 334.56663 * 11 10 8 23 23 N 1.31809 * 106.96236 * 0.39520 * 4 3 2 24 24 N 1.28472 * 110.07111 * 359.75299 * 23 4 3 25 25 C 1.46503 * 124.88127 * 180.02562 * 24 23 4 26 26 H 1.09002 * 109.47152 * 269.68985 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69085 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69066 * 1 2 3 29 29 H 1.08003 * 127.25108 * 359.96074 * 3 2 1 30 30 H 0.96995 * 120.00235 * 359.97438 * 7 5 4 31 31 H 1.08992 * 113.61783 * 254.52866 * 10 8 7 32 32 H 1.08999 * 113.61186 * 25.43200 * 10 8 7 33 33 H 0.97007 * 119.99828 * 24.99656 * 13 11 10 34 34 H 0.97004 * 120.00113 * 180.02562 * 17 16 14 35 35 H 1.09007 * 113.61542 * 270.88824 * 22 11 10 36 36 H 1.09005 * 113.61592 * 139.98444 * 22 11 10 37 37 H 1.09001 * 109.47235 * 269.96054 * 25 24 23 38 38 H 1.09005 * 109.47110 * 29.96585 * 25 24 23 39 39 H 1.08998 * 109.46409 * 149.95648 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0031 5 6 4.8765 1.3811 0.0071 6 8 4.8214 2.5955 0.0132 7 7 6.0730 0.7608 0.0037 8 6 7.3073 1.5501 0.0071 9 1 7.1688 2.5505 0.4172 10 6 8.5144 0.8034 0.5987 11 6 9.3553 1.4353 -0.5231 12 1 9.7777 2.4047 -0.2590 13 7 10.3434 0.5214 -1.1018 14 6 11.4673 1.0204 -1.7041 15 1 11.6252 2.0876 -1.7530 16 6 12.4038 0.1543 -2.2519 17 7 12.2111 -1.1463 -2.1928 18 14 13.9367 0.8351 -3.0743 19 1 13.9159 2.3184 -3.0095 20 1 15.1423 0.3263 -2.3724 21 1 13.9707 0.4015 -4.4942 22 6 8.0542 1.5313 -1.3370 23 7 3.5420 -0.7297 -0.0039 24 7 2.3080 -1.0871 -0.0059 25 6 1.8376 -2.4745 -0.0128 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 2.0057 2.1260 -0.0006 30 1 6.1170 -0.2081 -0.0009 31 1 8.7918 1.1431 1.5965 32 1 8.4349 -0.2813 0.5266 33 1 10.2014 -0.4372 -1.0581 34 1 12.8657 -1.7514 -2.5753 35 1 7.8488 0.6455 -1.9383 36 1 7.9599 2.4588 -1.9020 37 1 1.7204 -2.8133 -1.0422 38 1 2.5641 -3.1070 0.4975 39 1 0.8784 -2.5354 0.5013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021877468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:01 Heat of formation + Delta-G solvation = 72.941560 kcal Electronic energy + Delta-G solvation = -20703.880731 eV Core-core repulsion = 17456.292213 eV Total energy + Delta-G solvation = -3247.588518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.85150 -39.56875 -37.76391 -34.07647 -33.76248 -32.95425 -32.45801 -29.85517 -27.85968 -27.24097 -25.04876 -24.68299 -23.40514 -21.60126 -21.05726 -19.86057 -18.99551 -17.34692 -17.01738 -16.63051 -16.52056 -15.95464 -14.72926 -14.56673 -14.40244 -14.34053 -13.90670 -13.65188 -13.45035 -13.00920 -12.96052 -12.94039 -12.78049 -12.50178 -12.04514 -11.83937 -11.22920 -10.99139 -10.90516 -10.61994 -10.44502 -10.27072 -10.02014 -9.82578 -9.57090 -9.29618 -9.11468 -8.87304 -8.63432 -6.94587 -5.77054 -3.05540 1.49462 1.93911 2.22166 3.37155 3.44434 3.50519 3.50865 3.52642 4.09893 4.32764 4.60838 4.67090 4.68125 4.73641 4.95261 5.07609 5.10495 5.29096 5.30995 5.38720 5.45473 5.47807 5.52261 5.72063 5.92127 6.00915 6.17170 6.25411 6.32622 6.38642 6.53644 6.60498 6.68315 6.81701 7.13720 7.60265 7.72651 7.87283 8.38459 8.41597 9.52885 10.10253 10.44904 11.45527 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.002922 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.389713 B = 9578.868059 C =10070.456200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.005 3.995 3 C -0.179 4.179 4 C -0.011 4.011 5 C 0.602 3.398 6 O -0.539 6.539 7 N -0.700 5.700 8 C 0.117 3.883 9 H 0.111 0.889 10 C -0.158 4.158 11 C 0.169 3.831 12 H 0.081 0.919 13 N -0.711 5.711 14 C -0.241 4.241 15 H 0.073 0.927 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.176 4.176 23 N -0.261 5.261 24 N -0.284 5.284 25 C 0.085 3.915 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.161 0.839 30 H 0.405 0.595 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.572 -1.945 6.429 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.171 4.171 5 C 0.386 3.614 6 O -0.414 6.414 7 N -0.349 5.349 8 C 0.012 3.988 9 H 0.129 0.871 10 C -0.198 4.198 11 C 0.056 3.944 12 H 0.099 0.901 13 N -0.349 5.349 14 C -0.373 4.373 15 H 0.091 0.909 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.218 4.218 23 N -0.097 5.097 24 N -0.073 5.073 25 C -0.055 4.055 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.179 0.821 30 H 0.240 0.760 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.797 -2.077 6.350 25.681 hybrid contribution 0.270 0.002 -0.554 0.616 sum -24.527 -2.075 5.796 25.288 Atomic orbital electron populations 1.20332 0.86679 1.03875 1.03171 1.21398 0.95406 0.86760 1.08364 1.21524 0.90578 0.99574 1.09029 1.22010 0.95366 0.89668 1.10078 1.16918 0.81790 0.86410 0.76300 1.90770 1.86836 1.12923 1.50915 1.45919 1.05122 1.10650 1.73230 1.22552 0.80923 0.96100 0.99191 0.87110 1.23862 0.95326 1.00653 0.99967 1.21355 0.87506 0.94456 0.91070 0.90146 1.42375 1.21000 1.04891 1.66588 1.19372 0.96948 0.92175 1.28778 0.90908 1.24769 0.99158 0.95325 1.01764 1.69669 1.36624 1.00983 1.50873 0.86105 0.83130 0.78004 0.78902 1.20469 1.21875 1.21880 1.24338 0.99126 1.01933 0.96416 1.73550 1.01700 1.15010 1.19397 1.45327 1.02839 1.07501 1.51597 1.22157 1.01517 0.77364 1.04489 0.90416 0.91226 0.89536 0.82107 0.75970 0.91427 0.89937 0.78083 0.93543 0.90183 0.92142 0.89673 0.88346 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 9.86 36.01 0.35 -0.04 16 2 C 0.00 0.04 6.92 -82.21 -0.57 -0.53 16 3 C -0.18 -2.18 10.73 -39.37 -0.42 -2.60 16 4 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 5 C 0.60 9.91 7.82 -12.39 -0.10 9.82 16 6 O -0.54 -10.29 16.52 5.31 0.09 -10.20 16 7 N -0.70 -10.79 5.35 -54.00 -0.29 -11.08 16 8 C 0.12 1.91 4.24 -67.12 -0.28 1.63 16 9 H 0.11 1.84 7.46 -51.93 -0.39 1.45 16 10 C -0.16 -2.65 7.58 -25.92 -0.20 -2.84 16 11 C 0.17 3.40 4.48 -67.12 -0.30 3.10 16 12 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 13 N -0.71 -17.96 5.40 -52.64 -0.28 -18.25 16 14 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 15 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 C -0.18 -3.27 7.68 -25.92 -0.20 -3.47 16 23 N -0.26 -3.41 11.67 33.42 0.39 -3.02 16 24 N -0.28 -2.80 3.70 -63.85 -0.24 -3.04 16 25 C 0.09 0.42 10.92 59.85 0.65 1.07 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.22 7.65 -51.93 -0.40 -0.18 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.41 5.75 8.45 -40.82 -0.35 5.41 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 33 H 0.39 10.26 7.92 -40.82 -0.32 9.94 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 1.58 8.14 -51.92 -0.42 1.15 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.20 7.55 -51.93 -0.39 -0.19 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -34.81 335.83 -7.08 -41.89 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.61 Total: 10.71 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.90 Total: -2.03 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.31 Total: -62.98 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.81 -7.08 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021877468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.836 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds