Wall clock time and date at job start Tue Mar 31 2020 00:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35357 * 126.38627 * 2 1 4 4 C 1.41500 * 105.50493 * 179.86848 * 3 2 1 5 5 C 1.47712 * 126.52114 * 180.13186 * 4 3 2 6 6 O 1.21567 * 119.99934 * 0.28802 * 5 4 3 7 7 N 1.34777 * 119.99959 * 180.29615 * 5 4 3 8 8 C 1.46506 * 119.99827 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.84702 * 23.79745 * 8 7 5 10 10 C 1.53779 * 113.61467 * 154.99815 * 8 7 5 11 11 C 1.53780 * 87.07991 * 139.97993 * 10 8 7 12 12 H 1.08997 * 113.61663 * 89.11906 * 11 10 8 13 13 N 1.46504 * 113.61436 * 220.01853 * 11 10 8 14 14 C 1.36935 * 120.00106 * 205.00126 * 13 11 10 15 15 H 1.07993 * 120.00145 * 359.97438 * 14 13 11 16 16 C 1.38818 * 119.99797 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99753 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47088 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46885 * 120.00018 * 18 16 14 21 21 H 1.48498 * 109.47073 * 240.00053 * 18 16 14 22 22 C 1.53774 * 87.08306 * 334.56663 * 11 10 8 23 23 N 1.31809 * 106.96236 * 0.39520 * 4 3 2 24 24 N 1.28472 * 110.07111 * 359.75299 * 23 4 3 25 25 C 1.46503 * 124.88127 * 180.02562 * 24 23 4 26 26 H 1.09002 * 109.47152 * 269.68985 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69085 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69066 * 1 2 3 29 29 H 1.08003 * 127.25108 * 359.96074 * 3 2 1 30 30 H 0.96995 * 120.00235 * 359.97438 * 7 5 4 31 31 H 1.08992 * 113.61783 * 254.52866 * 10 8 7 32 32 H 1.08999 * 113.61186 * 25.43200 * 10 8 7 33 33 H 0.97007 * 119.99828 * 24.99656 * 13 11 10 34 34 H 0.97004 * 120.00113 * 180.02562 * 17 16 14 35 35 H 1.09007 * 113.61542 * 270.88824 * 22 11 10 36 36 H 1.09005 * 113.61592 * 139.98444 * 22 11 10 37 37 H 1.09001 * 109.47235 * 269.96054 * 25 24 23 38 38 H 1.09005 * 109.47110 * 29.96585 * 25 24 23 39 39 H 1.08998 * 109.46409 * 149.95648 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0031 5 6 4.8765 1.3811 0.0071 6 8 4.8214 2.5955 0.0132 7 7 6.0730 0.7608 0.0037 8 6 7.3073 1.5501 0.0071 9 1 7.1688 2.5505 0.4172 10 6 8.5144 0.8034 0.5987 11 6 9.3553 1.4353 -0.5231 12 1 9.7777 2.4047 -0.2590 13 7 10.3434 0.5214 -1.1018 14 6 11.4673 1.0204 -1.7041 15 1 11.6252 2.0876 -1.7530 16 6 12.4038 0.1543 -2.2519 17 7 12.2111 -1.1463 -2.1928 18 14 13.9367 0.8351 -3.0743 19 1 13.9159 2.3184 -3.0095 20 1 15.1423 0.3263 -2.3724 21 1 13.9707 0.4015 -4.4942 22 6 8.0542 1.5313 -1.3370 23 7 3.5420 -0.7297 -0.0039 24 7 2.3080 -1.0871 -0.0059 25 6 1.8376 -2.4745 -0.0128 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 2.0057 2.1260 -0.0006 30 1 6.1170 -0.2081 -0.0009 31 1 8.7918 1.1431 1.5965 32 1 8.4349 -0.2813 0.5266 33 1 10.2014 -0.4372 -1.0581 34 1 12.8657 -1.7514 -2.5753 35 1 7.8488 0.6455 -1.9383 36 1 7.9599 2.4588 -1.9020 37 1 1.7204 -2.8133 -1.0422 38 1 2.5641 -3.1070 0.4975 39 1 0.8784 -2.5354 0.5013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021877468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:55 Heat of formation + Delta-G solvation = 47.559493 kcal Electronic energy + Delta-G solvation = -20704.981380 eV Core-core repulsion = 17456.292213 eV Total energy + Delta-G solvation = -3248.689167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -43.68229 -40.94137 -39.23570 -35.79994 -34.72865 -34.04782 -33.51595 -31.80549 -28.58632 -27.91336 -26.56923 -26.36656 -24.79948 -22.96911 -22.00657 -21.13942 -20.36235 -19.15397 -18.11691 -17.64056 -17.39020 -17.30196 -16.35253 -16.14818 -15.75795 -15.44621 -14.98598 -14.95436 -14.51149 -14.01878 -13.97288 -13.70565 -13.40413 -13.37300 -13.32491 -13.16288 -13.00560 -12.85437 -12.23112 -12.19655 -12.07186 -11.86578 -11.78642 -11.53460 -11.15886 -10.87605 -10.23574 -9.92362 -9.90996 -8.99568 -7.95319 -5.23700 0.48737 1.10434 1.48116 1.48472 1.56605 1.58879 2.18261 2.32776 2.57204 3.31457 3.36288 3.67676 3.74988 3.83450 3.92806 3.96234 4.23956 4.30103 4.30465 4.37228 4.52436 4.60696 4.67050 4.73957 4.79632 4.86973 4.88416 5.02671 5.09420 5.11609 5.13621 5.33762 5.34888 5.51108 5.64928 5.89364 6.26999 6.44343 6.88593 7.13939 7.33319 8.08407 8.32315 9.28207 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.002922 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.389713 B = 9578.868059 C =10070.456200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.022 3.978 3 C -0.207 4.207 4 C -0.044 4.044 5 C 0.600 3.400 6 O -0.573 6.573 7 N -0.694 5.694 8 C 0.133 3.867 9 H 0.113 0.887 10 C -0.140 4.140 11 C 0.153 3.847 12 H 0.084 0.916 13 N -0.724 5.724 14 C -0.243 4.243 15 H 0.078 0.922 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.295 1.295 22 C -0.171 4.171 23 N -0.279 5.279 24 N -0.278 5.278 25 C 0.072 3.928 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.412 0.588 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.375 0.625 34 H 0.251 0.749 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.646 -2.301 6.915 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.235 4.235 4 C -0.202 4.202 5 C 0.386 3.614 6 O -0.451 6.451 7 N -0.344 5.344 8 C 0.028 3.972 9 H 0.131 0.869 10 C -0.179 4.179 11 C 0.043 3.957 12 H 0.102 0.898 13 N -0.361 5.361 14 C -0.375 4.375 15 H 0.096 0.904 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.222 1.222 22 C -0.213 4.213 23 N -0.116 5.116 24 N -0.067 5.067 25 C -0.067 4.067 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.179 0.821 30 H 0.248 0.752 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.207 0.793 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.904 -2.420 6.856 27.869 hybrid contribution 0.751 0.068 -0.686 1.019 sum -26.153 -2.352 6.170 26.974 Atomic orbital electron populations 1.20537 0.83042 1.05521 1.04782 1.22012 0.97299 0.85588 1.05398 1.21734 0.90294 1.00743 1.10773 1.21802 0.95157 0.90463 1.12821 1.17247 0.82558 0.86239 0.75325 1.90733 1.87433 1.14358 1.52567 1.45821 1.04693 1.10869 1.72977 1.22290 0.81266 0.96343 0.97294 0.86897 1.23674 0.94016 1.00581 0.99676 1.21650 0.87128 0.94229 0.92703 0.89765 1.42528 1.21476 1.05019 1.67114 1.19756 0.97514 0.92458 1.27785 0.90426 1.25573 1.02352 0.95684 1.03277 1.69816 1.37638 1.02124 1.52465 0.85077 0.79363 0.78001 0.77361 1.19029 1.21951 1.22203 1.24178 0.98673 1.01203 0.97210 1.73476 1.03715 1.14295 1.20129 1.45849 1.01993 1.09389 1.49509 1.22636 1.03117 0.74796 1.06110 0.88642 0.88715 0.88783 0.82057 0.75215 0.89530 0.89800 0.79282 0.94013 0.91471 0.92375 0.88158 0.88131 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.86 71.24 0.70 0.22 16 2 C 0.02 0.36 6.92 41.40 0.29 0.65 16 3 C -0.21 -4.96 10.73 22.41 0.24 -4.72 16 4 C -0.04 -1.28 7.13 42.46 0.30 -0.98 16 5 C 0.60 20.11 7.82 86.75 0.68 20.79 16 6 O -0.57 -22.36 16.52 -3.93 -0.06 -22.43 16 7 N -0.69 -21.46 5.35 -443.03 -2.37 -23.83 16 8 C 0.13 4.31 4.24 45.52 0.19 4.50 16 9 H 0.11 3.69 7.46 -2.39 -0.02 3.68 16 10 C -0.14 -4.57 7.58 31.12 0.24 -4.33 16 11 C 0.15 6.16 4.48 45.51 0.20 6.37 16 12 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 13 N -0.72 -36.94 5.40 -320.46 -1.73 -38.67 16 14 C -0.24 -13.67 9.97 84.04 0.84 -12.83 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 17 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16 18 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 C -0.17 -6.38 7.68 31.12 0.24 -6.14 16 23 N -0.28 -7.10 11.67 -48.18 -0.56 -7.66 16 24 N -0.28 -4.91 3.70 -355.92 -1.32 -6.23 16 25 C 0.07 0.48 10.92 127.77 1.40 1.87 16 26 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.09 0.13 7.65 -2.39 -0.02 0.11 16 28 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.41 11.69 8.45 -92.71 -0.78 10.90 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 33 H 0.37 20.37 7.92 -92.70 -0.73 19.64 16 34 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.13 -0.04 7.55 -2.39 -0.02 -0.05 16 Total: -1.00 -76.42 335.83 1.60 -74.82 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.44 Total: 33.37 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.78 Total: 1.42 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -5.70 Total: -135.91 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.42 1.60 -74.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021877468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.378 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds