Wall clock time and date at job start Mon Mar 30 2020 23:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47209 * 124.99995 * 5 4 3 7 7 O 1.21284 * 120.00131 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00193 * 180.02562 * 8 6 5 10 10 H 1.09007 * 112.84920 * 23.80281 * 9 8 6 11 11 C 1.53778 * 113.61976 * 154.99917 * 9 8 6 12 12 C 1.53773 * 87.08357 * 139.98156 * 11 9 8 13 13 H 1.09000 * 113.61472 * 89.11850 * 12 11 9 14 14 N 1.46503 * 113.61726 * 219.94133 * 12 11 9 15 15 C 1.36934 * 120.00209 * 205.00151 * 14 12 11 16 16 H 1.08003 * 119.99871 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00269 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99914 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47210 * 60.00430 * 19 17 15 21 21 H 1.48500 * 109.46834 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47037 * 299.99587 * 19 17 15 23 23 C 1.53780 * 87.08357 * 334.57078 * 12 11 9 24 24 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 25 25 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 26 26 H 0.96999 * 126.03519 * 0.04296 * 25 2 1 27 27 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 28 28 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 29 29 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 30 30 H 1.08008 * 126.04405 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47156 * 245.00290 * 5 4 3 32 32 H 1.09000 * 109.47044 * 5.00488 * 5 4 3 33 33 H 0.96997 * 119.99675 * 0.02562 * 8 6 5 34 34 H 1.08998 * 113.61613 * 254.53566 * 11 9 8 35 35 H 1.09004 * 113.61122 * 25.43270 * 11 9 8 36 36 H 0.97003 * 119.99682 * 24.99008 * 14 12 11 37 37 H 0.96994 * 120.00257 * 179.97438 * 18 17 15 38 38 H 1.09003 * 113.61357 * 270.88906 * 23 12 11 39 39 H 1.08991 * 113.61695 * 139.97875 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 6 5.7388 1.1747 1.1645 7 8 5.4104 0.2844 1.9200 8 7 6.8952 1.8369 1.3658 9 6 7.7553 1.4819 2.4973 10 1 7.5994 0.4600 2.8432 11 6 9.2353 1.8404 2.2825 12 6 9.2611 2.2807 3.7556 13 1 9.5169 1.4777 4.4470 14 7 10.0363 3.5015 3.9898 15 6 10.5813 3.7405 5.2231 16 1 10.4393 3.0292 6.0233 17 6 11.3163 4.8971 5.4448 18 7 11.4898 5.7637 4.4696 19 14 12.0592 5.2234 7.1275 20 1 13.0004 4.1283 7.4739 21 1 12.7900 6.5159 7.1036 22 1 10.9771 5.2859 8.1425 23 6 7.7482 2.5246 3.6276 24 7 3.6334 -0.6524 0.0004 25 7 2.3027 -1.0899 0.0060 26 1 2.0056 -2.0133 0.0104 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.9740 2.1211 -0.0004 31 1 5.4034 1.4001 -0.9309 32 1 4.5484 2.5819 0.0891 33 1 7.1580 2.5486 0.7614 34 1 9.8676 0.9776 2.0735 35 1 9.3886 2.6590 1.5794 36 1 10.1637 4.1405 3.2712 37 1 12.0031 6.5720 4.6245 38 1 7.4949 3.5303 3.2921 39 1 7.1801 2.2142 4.5044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021959073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:23 Heat of formation + Delta-G solvation = 62.241344 kcal Electronic energy + Delta-G solvation = -20465.449797 eV Core-core repulsion = 17217.397283 eV Total energy + Delta-G solvation = -3248.052514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.42673 -39.66495 -37.85559 -34.01414 -33.51107 -32.65043 -31.74083 -29.94836 -28.66599 -27.19362 -25.07121 -24.46509 -22.52933 -20.94446 -20.55179 -19.85706 -19.02179 -17.58173 -17.15191 -16.77161 -16.05435 -15.29574 -14.95658 -14.56250 -14.48013 -14.04272 -13.88242 -13.53045 -13.26849 -13.02112 -12.96992 -12.85021 -12.50680 -12.26782 -11.87592 -11.85717 -11.23062 -10.88882 -10.68113 -10.57906 -10.47721 -10.27684 -10.04487 -9.72308 -9.59844 -9.33373 -8.87991 -8.75040 -8.65401 -6.96489 -5.78520 -3.07112 1.72247 2.54171 2.69232 2.82051 3.44521 3.45672 3.48981 3.50348 4.33796 4.45650 4.59956 4.74705 4.95026 5.01298 5.08032 5.14243 5.24790 5.29925 5.43125 5.43776 5.50112 5.52420 5.57221 5.90393 5.92777 5.99985 6.17974 6.29843 6.35602 6.45387 6.58586 6.65938 6.81727 7.11555 7.12508 7.57804 7.70087 7.73412 8.40117 8.43293 9.51383 10.08437 10.43187 11.43887 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045947 B = 0.002561 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.253173 B =10931.378877 C =11028.898563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.265 4.265 4 C 0.091 3.909 5 C -0.063 4.063 6 C 0.513 3.487 7 O -0.530 6.530 8 N -0.716 5.716 9 C 0.119 3.881 10 H 0.108 0.892 11 C -0.158 4.158 12 C 0.168 3.832 13 H 0.079 0.921 14 N -0.710 5.710 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.176 4.176 24 N -0.261 5.261 25 N -0.476 5.476 26 H 0.436 0.564 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.169 -9.607 -13.380 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.294 4.294 4 C -0.077 4.077 5 C -0.105 4.105 6 C 0.298 3.702 7 O -0.405 6.405 8 N -0.367 5.367 9 C 0.014 3.986 10 H 0.125 0.875 11 C -0.198 4.198 12 C 0.055 3.945 13 H 0.097 0.903 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.218 4.218 24 N -0.084 5.084 25 N -0.185 5.185 26 H 0.279 0.721 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.165 0.835 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.583 -11.260 -12.633 25.882 hybrid contribution -0.128 1.120 0.387 1.192 sum -19.712 -10.140 -12.246 25.324 Atomic orbital electron populations 1.20444 0.87340 1.03965 1.03265 1.21078 0.94544 0.87831 1.01440 1.21098 0.91402 0.99200 1.17747 1.21517 0.94505 0.91578 1.00105 1.20070 0.92050 0.99333 0.99006 1.20329 0.81703 0.82087 0.86089 1.90728 1.72430 1.30437 1.46939 1.46010 1.21493 1.38316 1.30873 1.22454 0.89494 0.99831 0.86789 0.87452 1.23855 0.94134 1.01160 1.00678 1.21353 0.89589 0.90712 0.92809 0.90317 1.42346 1.60351 1.20102 1.12015 1.19277 1.25627 1.03480 0.89104 0.91065 1.24763 1.01081 0.97308 0.97768 1.69643 1.45330 1.11943 1.31253 0.86249 0.78951 0.77131 0.83757 1.21209 1.21699 1.21224 1.24320 1.01686 0.98550 0.97249 1.77415 0.95518 1.12477 1.22946 1.46329 1.04212 1.08150 1.59845 0.72086 0.90222 0.89558 0.91165 0.83527 0.87292 0.86906 0.76664 0.91580 0.89952 0.78094 0.93421 0.90204 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.43 36.01 0.38 -0.07 16 2 C 0.08 0.73 7.21 -82.27 -0.59 0.13 16 3 C -0.27 -2.77 10.64 -40.01 -0.43 -3.20 16 4 C 0.09 1.14 6.01 -82.40 -0.50 0.65 16 5 C -0.06 -0.65 6.28 -29.04 -0.18 -0.83 16 6 C 0.51 7.28 7.82 -10.99 -0.09 7.20 16 7 O -0.53 -9.93 15.16 5.55 0.08 -9.84 16 8 N -0.72 -9.33 5.35 -53.02 -0.28 -9.61 16 9 C 0.12 1.85 4.24 -67.12 -0.28 1.57 16 10 H 0.11 1.79 7.46 -51.92 -0.39 1.41 16 11 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 12 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 13 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 14 N -0.71 -17.64 5.40 -52.64 -0.28 -17.93 16 15 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 16 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C -0.18 -3.15 7.68 -25.92 -0.20 -3.35 16 24 N -0.26 -3.69 12.05 33.67 0.41 -3.28 16 25 N -0.48 -4.97 7.36 33.48 0.25 -4.72 16 26 H 0.44 3.14 8.96 -182.61 -1.64 1.51 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 0.84 8.12 -51.93 -0.42 0.41 16 33 H 0.40 4.07 8.73 -40.82 -0.36 3.72 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.39 10.03 7.92 -40.82 -0.32 9.70 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -36.01 335.68 -8.60 -44.61 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.89 Total: 10.60 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.63 Total: -5.00 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.81 Total: -62.80 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.01 -8.60 -44.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021959073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.855 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds