Wall clock time and date at job start Mon Mar 30 2020 23:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47209 * 124.99995 * 5 4 3 7 7 O 1.21284 * 120.00131 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00193 * 180.02562 * 8 6 5 10 10 H 1.09007 * 112.84920 * 23.80281 * 9 8 6 11 11 C 1.53778 * 113.61976 * 154.99917 * 9 8 6 12 12 C 1.53773 * 87.08357 * 139.98156 * 11 9 8 13 13 H 1.09000 * 113.61472 * 89.11850 * 12 11 9 14 14 N 1.46503 * 113.61726 * 219.94133 * 12 11 9 15 15 C 1.36934 * 120.00209 * 205.00151 * 14 12 11 16 16 H 1.08003 * 119.99871 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00269 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99914 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47210 * 60.00430 * 19 17 15 21 21 H 1.48500 * 109.46834 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47037 * 299.99587 * 19 17 15 23 23 C 1.53780 * 87.08357 * 334.57078 * 12 11 9 24 24 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 25 25 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 26 26 H 0.96999 * 126.03519 * 0.04296 * 25 2 1 27 27 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 28 28 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 29 29 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 30 30 H 1.08008 * 126.04405 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47156 * 245.00290 * 5 4 3 32 32 H 1.09000 * 109.47044 * 5.00488 * 5 4 3 33 33 H 0.96997 * 119.99675 * 0.02562 * 8 6 5 34 34 H 1.08998 * 113.61613 * 254.53566 * 11 9 8 35 35 H 1.09004 * 113.61122 * 25.43270 * 11 9 8 36 36 H 0.97003 * 119.99682 * 24.99008 * 14 12 11 37 37 H 0.96994 * 120.00257 * 179.97438 * 18 17 15 38 38 H 1.09003 * 113.61357 * 270.88906 * 23 12 11 39 39 H 1.08991 * 113.61695 * 139.97875 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 6 5.7388 1.1747 1.1645 7 8 5.4104 0.2844 1.9200 8 7 6.8952 1.8369 1.3658 9 6 7.7553 1.4819 2.4973 10 1 7.5994 0.4600 2.8432 11 6 9.2353 1.8404 2.2825 12 6 9.2611 2.2807 3.7556 13 1 9.5169 1.4777 4.4470 14 7 10.0363 3.5015 3.9898 15 6 10.5813 3.7405 5.2231 16 1 10.4393 3.0292 6.0233 17 6 11.3163 4.8971 5.4448 18 7 11.4898 5.7637 4.4696 19 14 12.0592 5.2234 7.1275 20 1 13.0004 4.1283 7.4739 21 1 12.7900 6.5159 7.1036 22 1 10.9771 5.2859 8.1425 23 6 7.7482 2.5246 3.6276 24 7 3.6334 -0.6524 0.0004 25 7 2.3027 -1.0899 0.0060 26 1 2.0056 -2.0133 0.0104 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.9740 2.1211 -0.0004 31 1 5.4034 1.4001 -0.9309 32 1 4.5484 2.5819 0.0891 33 1 7.1580 2.5486 0.7614 34 1 9.8676 0.9776 2.0735 35 1 9.3886 2.6590 1.5794 36 1 10.1637 4.1405 3.2712 37 1 12.0031 6.5720 4.6245 38 1 7.4949 3.5303 3.2921 39 1 7.1801 2.2142 4.5044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021959073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:20 Heat of formation + Delta-G solvation = 35.064800 kcal Electronic energy + Delta-G solvation = -20466.628261 eV Core-core repulsion = 17217.397283 eV Total energy + Delta-G solvation = -3249.230978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.20386 -40.90210 -39.24149 -35.74816 -34.40414 -34.06467 -32.46652 -31.78974 -29.59544 -27.80145 -26.53227 -26.30315 -24.04165 -21.99019 -21.42467 -21.05074 -20.27577 -19.12322 -18.34561 -17.84684 -17.45425 -16.34300 -16.24537 -16.10587 -15.70055 -15.22704 -14.95478 -14.65778 -14.45311 -14.24541 -13.86854 -13.68558 -13.46735 -13.28374 -13.14931 -13.07560 -12.80182 -12.74285 -12.26326 -12.16757 -12.03229 -11.72975 -11.50025 -11.47345 -10.88026 -10.79538 -10.22844 -9.91516 -9.49239 -8.97378 -7.94247 -5.22148 0.97486 1.48528 1.50962 1.56982 1.70636 1.74681 2.01653 2.41085 2.58827 3.37087 3.60820 3.72459 3.80189 3.87487 3.99087 4.08042 4.21782 4.30413 4.33461 4.46681 4.55019 4.75505 4.77289 4.80515 4.89388 4.90955 4.92852 5.12538 5.16719 5.18090 5.28632 5.41853 5.52305 5.70917 5.73062 6.28193 6.49198 6.68001 6.79243 7.34795 7.36900 8.10384 8.34607 9.28568 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045947 B = 0.002561 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.253173 B =10931.378877 C =11028.898563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.086 3.914 3 C -0.287 4.287 4 C 0.073 3.927 5 C -0.056 4.056 6 C 0.511 3.489 7 O -0.579 6.579 8 N -0.705 5.705 9 C 0.137 3.863 10 H 0.098 0.902 11 C -0.138 4.138 12 C 0.149 3.851 13 H 0.075 0.925 14 N -0.722 5.722 15 C -0.247 4.247 16 H 0.074 0.926 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.280 1.280 23 C -0.168 4.168 24 N -0.316 5.316 25 N -0.478 5.478 26 H 0.445 0.555 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.168 0.832 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.416 0.584 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.075 0.925 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.576 -9.630 -14.192 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.316 4.316 4 C -0.094 4.094 5 C -0.097 4.097 6 C 0.298 3.702 7 O -0.458 6.458 8 N -0.357 5.357 9 C 0.031 3.969 10 H 0.116 0.884 11 C -0.178 4.178 12 C 0.038 3.962 13 H 0.093 0.907 14 N -0.360 5.360 15 C -0.379 4.379 16 H 0.092 0.908 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.207 1.207 23 C -0.210 4.210 24 N -0.139 5.139 25 N -0.188 5.188 26 H 0.290 0.710 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.185 0.815 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.253 0.747 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.013 -11.314 -13.473 27.406 hybrid contribution 0.201 1.042 0.621 1.230 sum -20.811 -10.271 -12.853 26.529 Atomic orbital electron populations 1.20593 0.84201 1.05133 1.04753 1.21773 0.96378 0.87034 0.99128 1.21476 0.90834 1.00691 1.18573 1.21976 0.96048 0.91539 0.99874 1.20185 0.90926 1.00616 0.97980 1.21022 0.81710 0.81013 0.86412 1.90710 1.73527 1.32642 1.48966 1.45855 1.20980 1.38608 1.30217 1.22048 0.89653 0.98445 0.86794 0.88430 1.23657 0.94542 1.01734 0.97844 1.21655 0.90024 0.89031 0.95448 0.90723 1.42473 1.61113 1.21532 1.10914 1.19651 1.24745 1.03230 0.90262 0.90818 1.25536 1.02368 0.97519 1.01219 1.69785 1.46587 1.12336 1.33043 0.85245 0.78168 0.76735 0.79816 1.20428 1.22069 1.20656 1.24150 0.99762 0.99065 0.98056 1.77313 0.97689 1.13707 1.25208 1.46389 1.03573 1.09184 1.59661 0.70970 0.88419 0.88472 0.89892 0.81460 0.84810 0.83647 0.74668 0.90249 0.89009 0.79088 0.93960 0.90662 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.43 71.24 0.74 0.12 16 2 C 0.09 1.43 7.21 41.40 0.30 1.73 16 3 C -0.29 -5.51 10.64 21.99 0.23 -5.28 16 4 C 0.07 1.75 6.01 43.10 0.26 2.01 16 5 C -0.06 -1.03 6.28 29.10 0.18 -0.85 16 6 C 0.51 13.89 7.82 87.66 0.69 14.57 16 7 O -0.58 -21.73 15.16 -3.04 -0.05 -21.78 16 8 N -0.71 -17.11 5.35 -440.04 -2.36 -19.47 16 9 C 0.14 4.09 4.24 45.52 0.19 4.29 16 10 H 0.10 3.21 7.46 -2.38 -0.02 3.19 16 11 C -0.14 -4.22 7.58 31.12 0.24 -3.99 16 12 C 0.15 5.84 4.48 45.51 0.20 6.05 16 13 H 0.07 2.97 8.10 -2.39 -0.02 2.95 16 14 N -0.72 -35.98 5.40 -320.45 -1.73 -37.71 16 15 C -0.25 -13.74 9.97 84.03 0.84 -12.90 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 18 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 19 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 C -0.17 -5.95 7.68 31.12 0.24 -5.72 16 24 N -0.32 -8.88 12.05 -47.38 -0.57 -9.45 16 25 N -0.48 -9.68 7.36 -48.00 -0.35 -10.03 16 26 H 0.44 6.25 8.96 -213.33 -1.91 4.34 16 27 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.39 8.14 -2.38 -0.02 0.38 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.15 1.68 8.12 -2.39 -0.02 1.66 16 33 H 0.42 7.39 8.73 -92.71 -0.81 6.58 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.67 8.10 -2.39 -0.02 2.65 16 36 H 0.38 19.74 7.92 -92.71 -0.73 19.01 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.93 335.68 -0.53 -79.46 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -2.36 Total: 32.74 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.58 Total: -3.74 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -4.73 Total: -134.89 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -78.93 -0.53 -79.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021959073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.529 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds