Wall clock time and date at job start Tue Mar 31 2020 00:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47087 * 2 1 4 4 N 1.30449 * 125.98218 * 270.27675 * 3 2 1 5 5 N 1.39939 * 108.89553 * 180.17071 * 4 3 2 6 6 H 0.97001 * 125.75870 * 179.85304 * 5 4 3 7 7 C 1.34266 * 108.48792 * 359.57838 * 5 4 3 8 8 C 1.38044 * 107.41888 * 0.25001 * 7 5 4 9 9 C 1.47425 * 126.41379 * 180.02562 * 8 7 5 10 10 O 1.21608 * 119.99718 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00134 * 359.96866 * 9 8 7 12 12 C 1.46499 * 119.99865 * 180.02562 * 11 9 8 13 13 H 1.08992 * 112.85038 * 23.79834 * 12 11 9 14 14 C 1.53788 * 113.61296 * 155.00120 * 12 11 9 15 15 C 1.53787 * 87.07802 * 139.97831 * 14 12 11 16 16 H 1.08998 * 113.61315 * 89.11558 * 15 14 12 17 17 N 1.46503 * 113.61127 * 220.01458 * 15 14 12 18 18 C 1.36935 * 119.99825 * 204.99810 * 17 15 14 19 19 H 1.07994 * 120.00433 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99591 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99786 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46923 * 120.00755 * 22 20 18 25 25 H 1.48494 * 109.47257 * 240.00408 * 22 20 18 26 26 C 1.53779 * 87.08199 * 334.56496 * 15 14 12 27 27 H 1.08993 * 109.47527 * 300.00105 * 1 2 3 28 28 H 1.09003 * 109.47077 * 60.00441 * 1 2 3 29 29 H 1.09006 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47146 * 239.99307 * 2 1 3 31 31 H 1.09003 * 109.47077 * 119.99559 * 2 1 3 32 32 H 1.08001 * 126.29046 * 180.22045 * 7 5 4 33 33 H 0.97002 * 119.99792 * 0.02562 * 11 9 8 34 34 H 1.08994 * 113.61105 * 254.52634 * 14 12 11 35 35 H 1.08999 * 113.61244 * 25.34829 * 14 12 11 36 36 H 0.97004 * 119.99653 * 25.00395 * 17 15 14 37 37 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 38 38 H 1.09001 * 113.61533 * 270.88300 * 26 15 14 39 39 H 1.08998 * 113.61175 * 139.98065 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1451 -1.0556 5 7 2.7344 3.4042 -0.6444 6 1 2.9922 4.1331 -1.2303 7 6 2.7450 3.4354 0.6978 8 6 2.3090 2.2036 1.1432 9 6 2.1594 1.7839 2.5485 10 8 1.7628 0.6644 2.8097 11 7 2.4623 2.6408 3.5436 12 6 2.3142 2.2235 4.9401 13 1 2.3614 1.1419 5.0659 14 6 3.2193 2.9970 5.9135 15 6 2.0296 3.0070 6.8879 16 1 1.9979 2.1396 7.5472 17 7 1.8690 4.2744 7.6050 18 6 1.2360 4.2987 8.8190 19 1 0.8556 3.3836 9.2481 20 6 1.0843 5.4996 9.4987 21 7 1.5484 6.6148 8.9759 22 14 0.2215 5.5327 11.1552 23 1 -0.2032 4.1572 11.5197 24 1 1.1531 6.0528 12.1881 25 1 -0.9706 6.4144 11.0748 26 6 1.1198 2.8772 5.6549 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0406 4.2705 1.3156 33 1 2.7784 3.5339 3.3352 34 1 4.0713 2.4187 6.2706 35 1 3.5001 3.9874 5.5551 36 1 2.2109 5.0963 7.2197 37 1 1.4421 7.4540 9.4507 38 1 0.8256 3.8353 5.2266 39 1 0.2770 2.2021 5.8033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022348127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:01 Heat of formation + Delta-G solvation = 57.828246 kcal Electronic energy + Delta-G solvation = -20946.044262 eV Core-core repulsion = 17697.800381 eV Total energy + Delta-G solvation = -3248.243881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63062 -39.47082 -37.72522 -34.53257 -33.91941 -32.75740 -30.58288 -30.48791 -29.60069 -25.10656 -24.78682 -24.16204 -23.45140 -21.89197 -20.26566 -19.86879 -19.29675 -18.36442 -17.11948 -16.48756 -15.91987 -15.44424 -14.94090 -14.59880 -14.45271 -14.24317 -14.06589 -13.89828 -13.17481 -13.00849 -12.85207 -12.45554 -12.10195 -11.90870 -11.61443 -11.34802 -11.26559 -10.94794 -10.90664 -10.60711 -10.47853 -10.30693 -10.02956 -9.79034 -9.71217 -9.54208 -9.07683 -8.91440 -8.64293 -6.99255 -5.81743 -3.10210 1.29231 1.99880 2.43909 3.40047 3.41401 3.47786 3.48227 3.49719 4.25487 4.40082 4.57621 4.88324 5.00759 5.12945 5.21344 5.25575 5.31685 5.37228 5.42527 5.47865 5.52202 5.86675 5.87384 5.96110 6.03970 6.13976 6.16288 6.25809 6.30679 6.33189 6.54937 6.63658 6.77764 6.82488 7.08326 7.29639 7.68672 7.73100 8.36935 8.41979 9.48520 10.05324 10.39787 11.40825 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032481 B = 0.003097 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.831974 B = 9038.724443 C = 9403.351048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.138 3.862 4 N -0.302 5.302 5 N -0.463 5.463 6 H 0.443 0.557 7 C 0.104 3.896 8 C -0.283 4.283 9 C 0.591 3.409 10 O -0.543 6.543 11 N -0.713 5.713 12 C 0.121 3.879 13 H 0.110 0.890 14 C -0.159 4.159 15 C 0.168 3.832 16 H 0.080 0.920 17 N -0.711 5.711 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.176 4.176 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.186 0.814 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 -7.230 -19.411 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.030 4.030 4 N -0.124 5.124 5 N -0.167 5.167 6 H 0.288 0.712 7 C -0.049 4.049 8 C -0.298 4.298 9 C 0.378 3.622 10 O -0.421 6.421 11 N -0.362 5.362 12 C 0.016 3.984 13 H 0.128 0.872 14 C -0.199 4.199 15 C 0.055 3.945 16 H 0.098 0.902 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.218 4.218 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.203 0.797 33 H 0.228 0.772 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.397 -8.023 -20.278 22.070 hybrid contribution -0.012 1.583 1.183 1.976 sum 3.385 -6.440 -19.095 20.434 Atomic orbital electron populations 1.21619 0.93926 1.02116 1.02044 1.20132 0.96590 0.87998 1.04095 1.22498 0.94844 0.96977 0.88685 1.77157 1.21963 0.90741 1.22515 1.46103 1.51667 1.13482 1.05474 0.71217 1.23202 0.97178 0.98860 0.85688 1.20411 1.19074 0.95415 0.94948 1.17251 0.76855 0.84698 0.83416 1.90728 1.46950 1.20257 1.84211 1.45885 1.67747 1.16332 1.06256 1.22473 0.98320 0.99821 0.77785 0.87162 1.23863 0.98680 1.00007 0.97333 1.21366 0.91856 0.91171 0.90093 0.90200 1.42363 1.67972 1.03662 1.20861 1.19373 1.28977 0.93750 0.95253 0.90902 1.24762 1.01588 0.95512 0.99079 1.69666 1.51366 0.97993 1.39163 0.86111 0.78877 0.77378 0.83803 1.20442 1.21858 1.21859 1.24324 0.97580 1.00331 0.99561 0.92013 0.93071 0.91873 0.90738 0.87953 0.79662 0.77156 0.91521 0.90099 0.78139 0.93534 0.90311 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.54 5.97 -27.88 -0.17 -0.71 16 3 C 0.14 1.68 6.52 -82.02 -0.53 1.15 16 4 N -0.30 -3.45 12.63 33.89 0.43 -3.02 16 5 N -0.46 -3.70 7.29 30.85 0.22 -3.47 16 6 H 0.44 1.90 8.96 -182.72 -1.64 0.26 16 7 C 0.10 0.84 11.52 -16.56 -0.19 0.65 16 8 C -0.28 -3.34 6.13 -105.07 -0.64 -3.98 16 9 C 0.59 8.21 7.81 -12.52 -0.10 8.11 16 10 O -0.54 -9.15 14.52 5.27 0.08 -9.07 16 11 N -0.71 -8.92 5.34 -54.09 -0.29 -9.21 16 12 C 0.12 1.76 4.24 -67.11 -0.28 1.48 16 13 H 0.11 1.69 7.46 -51.93 -0.39 1.30 16 14 C -0.16 -2.41 7.58 -25.91 -0.20 -2.61 16 15 C 0.17 3.20 4.48 -67.11 -0.30 2.90 16 16 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 17 N -0.71 -17.24 5.40 -52.63 -0.28 -17.53 16 18 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.18 -3.01 7.68 -25.92 -0.20 -3.21 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.26 6.55 -51.93 -0.34 0.92 16 32 H 0.19 0.79 7.46 -52.49 -0.39 0.40 16 33 H 0.39 3.88 7.65 -40.82 -0.31 3.56 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.38 9.80 7.93 -40.82 -0.32 9.48 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -33.72 331.75 -8.38 -42.10 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.74 Total: 9.58 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.49 Total: -4.55 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.80 Total: -60.13 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.72 -8.38 -42.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022348127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.928 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds