Wall clock time and date at job start Tue Mar 31 2020 00:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47087 * 2 1 4 4 N 1.30449 * 125.98218 * 270.27675 * 3 2 1 5 5 N 1.39939 * 108.89553 * 180.17071 * 4 3 2 6 6 H 0.97001 * 125.75870 * 179.85304 * 5 4 3 7 7 C 1.34266 * 108.48792 * 359.57838 * 5 4 3 8 8 C 1.38044 * 107.41888 * 0.25001 * 7 5 4 9 9 C 1.47425 * 126.41379 * 180.02562 * 8 7 5 10 10 O 1.21608 * 119.99718 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00134 * 359.96866 * 9 8 7 12 12 C 1.46499 * 119.99865 * 180.02562 * 11 9 8 13 13 H 1.08992 * 112.85038 * 23.79834 * 12 11 9 14 14 C 1.53788 * 113.61296 * 155.00120 * 12 11 9 15 15 C 1.53787 * 87.07802 * 139.97831 * 14 12 11 16 16 H 1.08998 * 113.61315 * 89.11558 * 15 14 12 17 17 N 1.46503 * 113.61127 * 220.01458 * 15 14 12 18 18 C 1.36935 * 119.99825 * 204.99810 * 17 15 14 19 19 H 1.07994 * 120.00433 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99591 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99786 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46923 * 120.00755 * 22 20 18 25 25 H 1.48494 * 109.47257 * 240.00408 * 22 20 18 26 26 C 1.53779 * 87.08199 * 334.56496 * 15 14 12 27 27 H 1.08993 * 109.47527 * 300.00105 * 1 2 3 28 28 H 1.09003 * 109.47077 * 60.00441 * 1 2 3 29 29 H 1.09006 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47146 * 239.99307 * 2 1 3 31 31 H 1.09003 * 109.47077 * 119.99559 * 2 1 3 32 32 H 1.08001 * 126.29046 * 180.22045 * 7 5 4 33 33 H 0.97002 * 119.99792 * 0.02562 * 11 9 8 34 34 H 1.08994 * 113.61105 * 254.52634 * 14 12 11 35 35 H 1.08999 * 113.61244 * 25.34829 * 14 12 11 36 36 H 0.97004 * 119.99653 * 25.00395 * 17 15 14 37 37 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 38 38 H 1.09001 * 113.61533 * 270.88300 * 26 15 14 39 39 H 1.08998 * 113.61175 * 139.98065 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1451 -1.0556 5 7 2.7344 3.4042 -0.6444 6 1 2.9922 4.1331 -1.2303 7 6 2.7450 3.4354 0.6978 8 6 2.3090 2.2036 1.1432 9 6 2.1594 1.7839 2.5485 10 8 1.7628 0.6644 2.8097 11 7 2.4623 2.6408 3.5436 12 6 2.3142 2.2235 4.9401 13 1 2.3614 1.1419 5.0659 14 6 3.2193 2.9970 5.9135 15 6 2.0296 3.0070 6.8879 16 1 1.9979 2.1396 7.5472 17 7 1.8690 4.2744 7.6050 18 6 1.2360 4.2987 8.8190 19 1 0.8556 3.3836 9.2481 20 6 1.0843 5.4996 9.4987 21 7 1.5484 6.6148 8.9759 22 14 0.2215 5.5327 11.1552 23 1 -0.2032 4.1572 11.5197 24 1 1.1531 6.0528 12.1881 25 1 -0.9706 6.4144 11.0748 26 6 1.1198 2.8772 5.6549 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0406 4.2705 1.3156 33 1 2.7784 3.5339 3.3352 34 1 4.0713 2.4187 6.2706 35 1 3.5001 3.9874 5.5551 36 1 2.2109 5.0963 7.2197 37 1 1.4421 7.4540 9.4507 38 1 0.8256 3.8353 5.2266 39 1 0.2770 2.2021 5.8033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022348127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:59 Heat of formation + Delta-G solvation = 33.074857 kcal Electronic energy + Delta-G solvation = -20947.117650 eV Core-core repulsion = 17697.800381 eV Total energy + Delta-G solvation = -3249.317268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.42458 -40.66728 -39.01375 -35.79377 -35.17142 -34.18962 -32.02801 -31.28386 -30.92351 -26.52998 -26.38617 -25.06168 -24.70187 -23.12539 -21.29695 -21.00181 -20.36296 -19.39709 -18.93361 -17.55447 -17.21048 -16.34204 -16.23359 -16.05728 -15.64680 -15.26763 -15.18480 -14.98141 -14.88276 -14.35444 -13.90252 -13.54345 -13.27656 -13.24543 -13.12742 -12.83565 -12.44201 -12.21804 -12.17651 -12.10521 -11.98040 -11.76873 -11.69673 -11.45704 -10.86059 -10.72366 -10.54448 -10.03690 -9.68591 -8.95126 -7.93753 -5.20901 0.55838 1.09989 1.49271 1.49997 1.59690 1.81171 2.35804 2.48321 2.59409 3.38671 3.46637 3.74846 3.77490 3.92743 4.03013 4.15912 4.19545 4.33231 4.37720 4.43262 4.47846 4.56509 4.70157 4.84808 4.94516 4.96817 5.05294 5.17181 5.21644 5.22753 5.29481 5.43138 5.48563 5.55192 5.76492 6.27098 6.29467 6.50350 6.76028 7.36190 7.39875 8.12371 8.35804 9.29573 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032481 B = 0.003097 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.831974 B = 9038.724443 C = 9403.351048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C 0.124 3.876 4 N -0.324 5.324 5 N -0.447 5.447 6 H 0.461 0.539 7 C 0.134 3.866 8 C -0.319 4.319 9 C 0.590 3.410 10 O -0.580 6.580 11 N -0.703 5.703 12 C 0.140 3.860 13 H 0.106 0.894 14 C -0.138 4.138 15 C 0.148 3.852 16 H 0.077 0.923 17 N -0.723 5.723 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.169 4.169 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.410 0.590 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -6.940 -20.417 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 C -0.044 4.044 4 N -0.147 5.147 5 N -0.153 5.153 6 H 0.309 0.691 7 C -0.020 4.020 8 C -0.334 4.334 9 C 0.379 3.621 10 O -0.461 6.461 11 N -0.353 5.353 12 C 0.034 3.966 13 H 0.124 0.876 14 C -0.178 4.178 15 C 0.037 3.963 16 H 0.095 0.905 17 N -0.361 5.361 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.221 1.221 25 H -0.222 1.222 26 C -0.212 4.212 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.247 0.753 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.093 -7.751 -21.344 23.074 hybrid contribution -0.207 1.470 1.400 2.041 sum 3.885 -6.281 -19.944 21.268 Atomic orbital electron populations 1.21557 0.93673 1.02746 1.01054 1.20105 0.96797 0.88110 1.03852 1.22648 0.95169 0.97425 0.89169 1.77101 1.22842 0.92072 1.22650 1.46151 1.50209 1.12991 1.05944 0.69074 1.23753 0.94020 0.98442 0.85793 1.20330 1.22194 0.97275 0.93633 1.17550 0.75968 0.84187 0.84352 1.90709 1.48662 1.21887 1.84852 1.45677 1.67526 1.17032 1.05059 1.22091 0.96277 0.99286 0.78902 0.87622 1.23661 0.97684 1.00832 0.95599 1.21688 0.94855 0.89046 0.90674 0.90486 1.42499 1.68014 1.05068 1.20511 1.19733 1.27887 0.93692 0.96128 0.90696 1.25500 1.03238 0.95419 1.02483 1.69797 1.53269 0.98284 1.40512 0.85140 0.77472 0.77615 0.79958 1.19201 1.22055 1.22238 1.24159 0.97956 1.00083 0.98958 0.94209 0.92625 0.90498 0.89448 0.89601 0.75361 0.75295 0.90035 0.89154 0.79127 0.94046 0.91009 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.89 71.98 0.71 -2.05 16 2 C -0.05 -1.09 5.97 29.85 0.18 -0.92 16 3 C 0.12 2.89 6.52 43.51 0.28 3.18 16 4 N -0.32 -6.86 12.63 -46.68 -0.59 -7.45 16 5 N -0.45 -5.80 7.29 -56.31 -0.41 -6.21 16 6 H 0.46 2.36 8.96 -213.42 -1.91 0.44 16 7 C 0.13 1.73 11.52 84.27 0.97 2.70 16 8 C -0.32 -6.99 6.13 -20.15 -0.12 -7.11 16 9 C 0.59 15.75 7.81 86.66 0.68 16.43 16 10 O -0.58 -19.59 14.52 -4.06 -0.06 -19.65 16 11 N -0.70 -16.13 5.34 -443.29 -2.37 -18.50 16 12 C 0.14 3.88 4.24 45.52 0.19 4.07 16 13 H 0.11 3.12 7.46 -2.39 -0.02 3.10 16 14 C -0.14 -3.92 7.58 31.12 0.24 -3.68 16 15 C 0.15 5.52 4.48 45.52 0.20 5.72 16 16 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 17 N -0.72 -34.94 5.40 -320.44 -1.73 -36.68 16 18 C -0.24 -13.19 9.97 84.03 0.84 -12.35 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 22 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 C -0.17 -5.70 7.68 31.12 0.24 -5.46 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 2.18 6.55 -2.39 -0.02 2.16 16 32 H 0.23 0.77 7.46 -2.91 -0.02 0.75 16 33 H 0.41 6.75 7.65 -92.71 -0.71 6.04 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 36 H 0.38 19.18 7.93 -92.71 -0.73 18.44 16 37 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -73.54 331.75 -0.23 -73.77 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -2.26 Total: 27.75 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 4.87 Total: -3.18 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -4.82 Total: -126.27 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.06 Total: -19.65 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -73.54 -0.23 -73.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022348127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.844 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds