Wall clock time and date at job start Mon Mar 30 2020 23:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34674 * 126.59098 * 2 1 4 4 N 1.34130 * 108.01818 * 179.97438 * 3 2 1 5 5 C 1.30496 * 109.25933 * 359.97438 * 4 3 2 6 6 N 1.35044 * 108.69837 * 359.76717 * 5 4 3 7 7 C 1.46503 * 126.39953 * 180.27007 * 6 5 4 8 8 C 1.50702 * 109.47032 * 265.12295 * 7 6 5 9 9 O 1.21281 * 119.99966 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99643 * 179.97438 * 10 8 7 12 12 H 1.09004 * 112.84831 * 332.84630 * 11 10 8 13 13 C 1.53777 * 113.61511 * 104.15327 * 11 10 8 14 14 C 1.53780 * 87.08144 * 89.11341 * 13 11 10 15 15 H 1.08999 * 113.68674 * 139.99424 * 14 13 11 16 16 N 1.46505 * 113.61232 * 270.88542 * 14 13 11 17 17 C 1.36938 * 119.99639 * 183.72597 * 16 14 13 18 18 H 1.08008 * 120.00062 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99949 * 180.02562 * 17 16 14 20 20 N 1.31614 * 119.99880 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00186 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46947 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47419 * 119.99747 * 21 19 17 24 24 H 1.48502 * 109.47044 * 240.00018 * 21 19 17 25 25 C 1.53778 * 113.61021 * 201.65118 * 11 10 8 26 26 H 1.09001 * 109.46977 * 90.02423 * 1 2 3 27 27 H 1.09003 * 109.47091 * 330.02408 * 1 2 3 28 28 H 1.08996 * 109.46975 * 210.02381 * 1 2 3 29 29 H 1.07996 * 125.99254 * 359.96171 * 3 2 1 30 30 H 1.07995 * 125.65262 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.46906 * 25.11553 * 7 6 5 32 32 H 1.08992 * 109.47540 * 145.12149 * 7 6 5 33 33 H 0.96993 * 119.99965 * 359.97438 * 10 8 7 34 34 H 1.08995 * 113.61703 * 203.66857 * 13 11 10 35 35 H 1.09004 * 113.61221 * 334.56065 * 13 11 10 36 36 H 0.96994 * 120.00467 * 3.72085 * 16 14 13 37 37 H 0.97005 * 120.00079 * 180.02562 * 20 19 17 38 38 H 1.08997 * 113.61931 * 25.43032 * 25 11 10 39 39 H 1.08999 * 113.61515 * 156.25530 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5969 -0.6508 0.0015 6 7 2.3230 -1.0990 0.0067 7 6 1.8943 -2.4999 0.0149 8 6 1.6286 -2.9522 -1.3978 9 8 1.7817 -2.1803 -2.3206 10 7 1.2208 -4.2146 -1.6358 11 6 0.9619 -4.6541 -3.0092 12 1 0.6715 -3.8356 -3.6679 13 6 2.0694 -5.5501 -3.5883 14 6 1.2990 -6.7458 -3.0038 15 1 1.2811 -7.6173 -3.6581 16 7 1.6818 -7.0748 -1.6284 17 6 1.1327 -8.1645 -1.0070 18 1 0.4171 -8.7812 -1.5306 19 6 1.4949 -8.4759 0.2963 20 7 2.3665 -7.7242 0.9346 21 14 0.7464 -9.9629 1.1439 22 1 -0.1982 -10.6373 0.2174 23 1 1.8247 -10.9091 1.5273 24 1 0.0171 -9.5240 2.3608 25 6 0.0339 -5.8769 -3.0999 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8897 0.5142 29 1 1.9865 2.1118 -0.0006 30 1 4.4819 -1.2697 0.0025 31 1 2.6788 -3.1173 0.4526 32 1 0.9833 -2.5976 0.6051 33 1 1.0987 -4.8320 -0.8978 34 1 2.1091 -5.5465 -4.6775 35 1 3.0446 -5.3917 -3.1278 36 1 2.3242 -6.5208 -1.1580 37 1 2.6200 -7.9420 1.8453 38 1 -0.6343 -5.9824 -2.2452 39 1 -0.4842 -5.9620 -4.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022435868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:29 Heat of formation + Delta-G solvation = 62.697287 kcal Electronic energy + Delta-G solvation = -21702.585260 eV Core-core repulsion = 18454.552516 eV Total energy + Delta-G solvation = -3248.032743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.06024 -39.91013 -38.04998 -33.94477 -33.79427 -32.72120 -31.89151 -30.04715 -27.84338 -26.38170 -25.33246 -24.51239 -22.88695 -21.37788 -20.81624 -19.73119 -18.86454 -17.64360 -17.08982 -17.04338 -15.69937 -15.28953 -15.06124 -14.83323 -14.52301 -14.17255 -13.81534 -13.61482 -13.30532 -13.23690 -12.99008 -12.79475 -12.51304 -12.34113 -11.98937 -11.85513 -11.55173 -11.04125 -10.93806 -10.48310 -10.28522 -10.23697 -9.90334 -9.87403 -9.68864 -9.32877 -9.07686 -8.74238 -8.19406 -7.19255 -5.99746 -3.29286 2.03943 2.61530 2.66843 3.26510 3.29928 3.37508 3.38796 3.44865 4.40937 4.64915 4.68876 4.78548 4.84126 4.98430 5.00430 5.09248 5.13381 5.31611 5.37273 5.45638 5.51545 5.63073 5.77859 5.79540 5.83575 6.02836 6.15406 6.25182 6.43105 6.46160 6.53533 6.71056 6.82337 6.93021 7.21559 7.55592 7.72802 8.16207 8.19927 8.32072 9.31391 9.85272 10.20481 11.22693 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.004456 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.707960 B = 6282.005879 C = 7019.058669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.015 4.015 3 C -0.034 4.034 4 N -0.495 5.495 5 C 0.190 3.810 6 N -0.437 5.437 7 C 0.082 3.918 8 C 0.498 3.502 9 O -0.535 6.535 10 N -0.694 5.694 11 C 0.127 3.873 12 H 0.088 0.912 13 C -0.163 4.163 14 C 0.162 3.838 15 H 0.054 0.946 16 N -0.710 5.710 17 C -0.243 4.243 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.178 4.178 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.166 0.834 30 H 0.203 0.797 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.417 0.583 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.383 0.617 37 H 0.257 0.743 38 H 0.075 0.925 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 10.150 -2.361 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C -0.182 4.182 4 N -0.213 5.213 5 C -0.092 4.092 6 N -0.120 5.120 7 C -0.045 4.045 8 C 0.281 3.719 9 O -0.412 6.412 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.106 0.894 13 C -0.202 4.202 14 C 0.050 3.950 15 H 0.072 0.928 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.092 0.908 19 C -0.206 4.206 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.219 4.219 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.183 0.817 30 H 0.220 0.780 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.256 0.744 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.218 0.782 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.332 10.893 -2.941 11.765 hybrid contribution -0.853 -1.653 1.000 2.111 sum -4.185 9.240 -1.941 10.328 Atomic orbital electron populations 1.20209 0.87553 1.02915 1.02809 1.21196 0.94481 0.86797 1.10421 1.21947 0.88500 0.98175 1.09551 1.70239 1.22392 1.08805 1.19832 1.24878 0.87073 0.91750 1.05486 1.44884 1.07403 1.05449 1.54311 1.21723 1.05093 0.81082 0.96585 1.20618 0.77758 0.82695 0.90789 1.90741 1.51563 1.53686 1.45175 1.45865 1.66867 1.12004 1.10066 1.21738 0.97359 0.95907 0.82815 0.89352 1.23715 0.98640 0.97473 1.00407 1.21220 0.92001 0.93685 0.88051 0.92821 1.42255 1.51302 1.32170 1.09415 1.19296 1.19404 1.03232 0.95404 0.90821 1.24733 0.99449 0.99286 0.97113 1.69634 1.35942 1.40162 1.12479 0.86100 0.78315 0.82285 0.79361 1.20485 1.21770 1.21798 1.24064 0.99330 0.96612 1.01913 0.90854 0.90129 0.91954 0.81692 0.78039 0.85149 0.86255 0.74424 0.89402 0.91301 0.78181 0.93341 0.90609 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.18 36.01 0.37 -0.42 16 2 C -0.01 -0.20 6.95 -81.60 -0.57 -0.76 16 3 C -0.03 -0.49 11.79 -17.81 -0.21 -0.70 16 4 N -0.50 -7.92 11.25 -14.67 -0.17 -8.08 16 5 C 0.19 2.73 12.56 -90.38 -1.13 1.60 16 6 N -0.44 -6.02 2.24 -115.28 -0.26 -6.27 16 7 C 0.08 1.00 6.42 -5.19 -0.03 0.97 16 8 C 0.50 7.56 7.90 -10.98 -0.09 7.47 16 9 O -0.53 -9.96 16.07 5.56 0.09 -9.87 16 10 N -0.69 -10.62 4.94 -53.01 -0.26 -10.88 16 11 C 0.13 1.96 4.28 -67.12 -0.29 1.67 16 12 H 0.09 1.38 7.55 -51.93 -0.39 0.99 16 13 C -0.16 -2.55 7.57 -25.92 -0.20 -2.74 16 14 C 0.16 2.89 4.54 -67.12 -0.30 2.58 16 15 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 16 N -0.71 -15.54 4.41 -52.63 -0.23 -15.78 16 17 C -0.24 -6.03 9.99 -15.06 -0.15 -6.18 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -25.11 13.06 55.49 0.72 -24.38 16 21 Si 0.91 20.66 29.55 -169.99 -5.02 15.63 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.18 -2.75 7.61 -25.92 -0.20 -2.94 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.59 7.33 -51.93 -0.38 0.20 16 29 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.13 1.39 8.13 -51.93 -0.42 0.97 16 32 H 0.12 1.21 7.35 -51.93 -0.38 0.83 16 33 H 0.42 6.76 7.18 -40.82 -0.29 6.46 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.38 8.79 6.97 -40.82 -0.28 8.50 16 37 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -31.07 331.88 -8.53 -39.60 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -5.50 Total: 14.85 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.90 Total: 0.18 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.19 Total: -65.40 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.07 -8.53 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022435868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.298 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds