Wall clock time and date at job start Mon Mar 30 2020 23:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34674 * 126.59098 * 2 1 4 4 N 1.34130 * 108.01818 * 179.97438 * 3 2 1 5 5 C 1.30496 * 109.25933 * 359.97438 * 4 3 2 6 6 N 1.35044 * 108.69837 * 359.76717 * 5 4 3 7 7 C 1.46503 * 126.39953 * 180.27007 * 6 5 4 8 8 C 1.50702 * 109.47032 * 265.12295 * 7 6 5 9 9 O 1.21281 * 119.99966 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99643 * 179.97438 * 10 8 7 12 12 H 1.09004 * 112.84831 * 332.84630 * 11 10 8 13 13 C 1.53777 * 113.61511 * 104.15327 * 11 10 8 14 14 C 1.53780 * 87.08144 * 89.11341 * 13 11 10 15 15 H 1.08999 * 113.68674 * 139.99424 * 14 13 11 16 16 N 1.46505 * 113.61232 * 270.88542 * 14 13 11 17 17 C 1.36938 * 119.99639 * 183.72597 * 16 14 13 18 18 H 1.08008 * 120.00062 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99949 * 180.02562 * 17 16 14 20 20 N 1.31614 * 119.99880 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00186 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46947 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47419 * 119.99747 * 21 19 17 24 24 H 1.48502 * 109.47044 * 240.00018 * 21 19 17 25 25 C 1.53778 * 113.61021 * 201.65118 * 11 10 8 26 26 H 1.09001 * 109.46977 * 90.02423 * 1 2 3 27 27 H 1.09003 * 109.47091 * 330.02408 * 1 2 3 28 28 H 1.08996 * 109.46975 * 210.02381 * 1 2 3 29 29 H 1.07996 * 125.99254 * 359.96171 * 3 2 1 30 30 H 1.07995 * 125.65262 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.46906 * 25.11553 * 7 6 5 32 32 H 1.08992 * 109.47540 * 145.12149 * 7 6 5 33 33 H 0.96993 * 119.99965 * 359.97438 * 10 8 7 34 34 H 1.08995 * 113.61703 * 203.66857 * 13 11 10 35 35 H 1.09004 * 113.61221 * 334.56065 * 13 11 10 36 36 H 0.96994 * 120.00467 * 3.72085 * 16 14 13 37 37 H 0.97005 * 120.00079 * 180.02562 * 20 19 17 38 38 H 1.08997 * 113.61931 * 25.43032 * 25 11 10 39 39 H 1.08999 * 113.61515 * 156.25530 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5969 -0.6508 0.0015 6 7 2.3230 -1.0990 0.0067 7 6 1.8943 -2.4999 0.0149 8 6 1.6286 -2.9522 -1.3978 9 8 1.7817 -2.1803 -2.3206 10 7 1.2208 -4.2146 -1.6358 11 6 0.9619 -4.6541 -3.0092 12 1 0.6715 -3.8356 -3.6679 13 6 2.0694 -5.5501 -3.5883 14 6 1.2990 -6.7458 -3.0038 15 1 1.2811 -7.6173 -3.6581 16 7 1.6818 -7.0748 -1.6284 17 6 1.1327 -8.1645 -1.0070 18 1 0.4171 -8.7812 -1.5306 19 6 1.4949 -8.4759 0.2963 20 7 2.3665 -7.7242 0.9346 21 14 0.7464 -9.9629 1.1439 22 1 -0.1982 -10.6373 0.2174 23 1 1.8247 -10.9091 1.5273 24 1 0.0171 -9.5240 2.3608 25 6 0.0339 -5.8769 -3.0999 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8897 0.5142 29 1 1.9865 2.1118 -0.0006 30 1 4.4819 -1.2697 0.0025 31 1 2.6788 -3.1173 0.4526 32 1 0.9833 -2.5976 0.6051 33 1 1.0987 -4.8320 -0.8978 34 1 2.1091 -5.5465 -4.6775 35 1 3.0446 -5.3917 -3.1278 36 1 2.3242 -6.5208 -1.1580 37 1 2.6200 -7.9420 1.8453 38 1 -0.6343 -5.9824 -2.2452 39 1 -0.4842 -5.9620 -4.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022435868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:28 Heat of formation + Delta-G solvation = 44.026184 kcal Electronic energy + Delta-G solvation = -21703.394899 eV Core-core repulsion = 18454.552516 eV Total energy + Delta-G solvation = -3248.842383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10474 -41.18389 -39.37592 -35.48782 -35.03097 -34.11733 -32.82753 -31.79398 -28.94065 -27.32290 -26.67629 -26.14989 -24.34256 -22.44927 -22.03433 -20.83934 -20.18386 -19.24531 -18.48664 -18.10285 -16.96215 -16.59793 -16.40605 -16.21287 -15.77752 -15.42640 -15.19018 -15.01453 -14.65269 -14.50998 -13.96317 -13.68945 -13.54819 -13.37923 -13.20421 -13.11882 -13.06171 -12.79634 -12.55888 -12.08539 -11.92208 -11.73318 -11.42433 -11.08892 -10.96744 -10.84576 -10.46090 -10.02997 -9.22778 -8.98404 -7.93891 -5.21426 0.98667 1.42616 1.50023 1.53712 1.60557 1.65715 2.18089 2.31355 2.57804 3.39602 3.56050 3.69073 3.71491 3.80056 3.85980 3.87685 3.98324 4.09096 4.20889 4.27678 4.39020 4.53541 4.72917 4.82645 4.83299 4.88903 4.97056 5.01885 5.06341 5.23611 5.36694 5.43431 5.54585 5.68529 5.82815 6.17502 6.30061 6.49681 7.08740 7.11038 7.37252 8.08860 8.34311 9.28710 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.004456 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.707960 B = 6282.005879 C = 7019.058669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 C -0.057 4.057 4 N -0.527 5.527 5 C 0.176 3.824 6 N -0.441 5.441 7 C 0.086 3.914 8 C 0.501 3.499 9 O -0.571 6.571 10 N -0.693 5.693 11 C 0.127 3.873 12 H 0.091 0.909 13 C -0.152 4.152 14 C 0.145 3.855 15 H 0.053 0.947 16 N -0.717 5.717 17 C -0.237 4.237 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.961 5.961 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.300 1.300 24 H -0.294 1.294 25 C -0.160 4.160 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.184 0.816 30 H 0.223 0.777 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.414 0.586 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 10.007 -2.789 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 C -0.203 4.203 4 N -0.245 5.245 5 C -0.106 4.106 6 N -0.124 5.124 7 C -0.040 4.040 8 C 0.287 3.713 9 O -0.450 6.450 10 N -0.345 5.345 11 C 0.022 3.978 12 H 0.109 0.891 13 C -0.191 4.191 14 C 0.036 3.964 15 H 0.071 0.929 16 N -0.359 5.359 17 C -0.369 4.369 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.611 5.611 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.228 1.228 24 H -0.221 1.221 25 C -0.200 4.200 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.201 0.799 30 H 0.239 0.761 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.252 0.748 34 H 0.133 0.867 35 H 0.071 0.929 36 H 0.210 0.790 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.605 10.744 -3.406 12.175 hybrid contribution -0.470 -1.606 1.032 1.966 sum -5.075 9.137 -2.375 10.719 Atomic orbital electron populations 1.20306 0.85367 1.04638 1.02890 1.21742 0.95928 0.86513 1.09265 1.22392 0.88271 0.99513 1.10122 1.70206 1.23577 1.09825 1.20915 1.25349 0.88107 0.91802 1.05347 1.45018 1.07333 1.06007 1.54036 1.21843 1.06780 0.80551 0.94873 1.21030 0.76631 0.82085 0.91601 1.90725 1.53188 1.54491 1.46597 1.45879 1.66630 1.12037 1.09978 1.21766 0.97179 0.95946 0.82955 0.89077 1.23699 0.97559 0.95981 1.01842 1.21454 0.94156 0.94656 0.86178 0.92884 1.42323 1.51178 1.31499 1.10852 1.19556 1.18471 1.03490 0.95385 0.90768 1.25324 1.00530 1.01600 0.97997 1.69743 1.37466 1.41530 1.12405 0.85238 0.77350 0.79716 0.78374 1.19558 1.22806 1.22091 1.23932 0.97978 0.95230 1.02898 0.91420 0.87791 0.90918 0.79911 0.76111 0.83593 0.83837 0.74804 0.86706 0.92922 0.79001 0.93950 0.92000 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.18 71.24 0.73 -0.66 16 2 C -0.02 -0.51 6.95 40.95 0.28 -0.23 16 3 C -0.06 -1.59 11.79 83.52 0.98 -0.60 16 4 N -0.53 -16.79 11.25 -200.31 -2.25 -19.04 16 5 C 0.18 4.98 12.56 180.26 2.26 7.24 16 6 N -0.44 -11.67 2.24 -518.62 -1.16 -12.83 16 7 C 0.09 1.96 6.42 85.63 0.55 2.51 16 8 C 0.50 14.65 7.90 87.66 0.69 15.34 16 9 O -0.57 -20.79 16.07 -3.03 -0.05 -20.84 16 10 N -0.69 -20.37 4.94 -440.02 -2.18 -22.55 16 11 C 0.13 3.68 4.28 45.51 0.19 3.87 16 12 H 0.09 2.65 7.55 -2.38 -0.02 2.63 16 13 C -0.15 -4.46 7.57 31.12 0.24 -4.23 16 14 C 0.14 4.94 4.54 45.52 0.21 5.15 16 15 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 16 N -0.72 -30.87 4.41 -320.43 -1.41 -32.28 16 17 C -0.24 -11.60 9.99 84.03 0.84 -10.76 16 18 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 19 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 20 N -0.96 -51.65 13.06 21.65 0.28 -51.37 16 21 Si 0.96 42.15 29.55 68.60 2.03 44.18 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 C -0.16 -4.55 7.61 31.12 0.24 -4.32 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.19 7.33 -2.39 -0.02 1.17 16 29 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.22 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.15 2.91 8.13 -2.39 -0.02 2.89 16 32 H 0.14 2.58 7.35 -2.39 -0.02 2.57 16 33 H 0.41 13.02 7.18 -92.71 -0.67 12.35 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.38 17.15 6.97 -92.71 -0.65 16.50 16 37 H 0.25 13.29 8.31 -92.70 -0.77 12.52 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.75 331.88 2.70 -63.05 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.24 Total: 41.03 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 7.68 Total: 10.65 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -6.72 Total: -138.07 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.75 2.70 -63.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022435868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.080 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds