Wall clock time and date at job start Mon Mar 30 2020 23:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30865 * 125.41460 * 2 1 4 4 C 1.33319 * 109.68083 * 180.02562 * 3 2 1 5 5 C 1.36658 * 107.79185 * 0.02562 * 4 3 2 6 6 C 1.46760 * 126.84963 * 180.02562 * 5 4 3 7 7 O 1.21685 * 120.00283 * 184.96297 * 6 5 4 8 8 N 1.34780 * 119.99781 * 4.96322 * 6 5 4 9 9 C 1.46502 * 120.00252 * 174.72013 * 8 6 5 10 10 H 1.09002 * 112.90198 * 336.25051 * 9 8 6 11 11 C 1.53780 * 113.61597 * 107.49602 * 9 8 6 12 12 C 1.53787 * 87.07989 * 139.98266 * 11 9 8 13 13 H 1.09003 * 113.68836 * 89.12437 * 12 11 9 14 14 N 1.46494 * 113.61382 * 220.02026 * 12 11 9 15 15 C 1.36940 * 119.99994 * 252.49361 * 14 12 11 16 16 H 1.07996 * 119.99635 * 0.02562 * 15 14 12 17 17 C 1.38807 * 119.99750 * 179.72523 * 15 14 12 18 18 N 1.31617 * 120.00514 * 0.28294 * 17 15 14 19 19 Si 1.86807 * 119.99710 * 180.27888 * 17 15 14 20 20 H 1.48495 * 109.47281 * 90.00165 * 19 17 15 21 21 H 1.48497 * 109.47032 * 210.00228 * 19 17 15 22 22 H 1.48500 * 109.47001 * 330.00044 * 19 17 15 23 23 C 1.53779 * 113.61439 * 205.00000 * 9 8 6 24 24 N 1.34492 * 125.42252 * 180.32527 * 2 1 3 25 25 C 1.46506 * 126.47253 * 0.02562 * 24 2 1 26 26 H 1.08992 * 109.47226 * 89.97453 * 1 2 3 27 27 H 1.09006 * 109.46453 * 209.97246 * 1 2 3 28 28 H 1.09000 * 109.47193 * 329.96508 * 1 2 3 29 29 H 1.08002 * 126.10410 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00004 * 354.71548 * 8 6 5 31 31 H 1.08996 * 113.61424 * 25.44029 * 11 9 8 32 32 H 1.09003 * 113.61869 * 254.52935 * 11 9 8 33 33 H 0.96995 * 120.00214 * 72.50327 * 14 12 11 34 34 H 0.97000 * 119.99987 * 179.97438 * 18 17 15 35 35 H 1.09001 * 113.61397 * 105.47268 * 23 9 8 36 36 H 1.08994 * 113.61492 * 334.56132 * 23 9 8 37 37 H 1.08997 * 109.46848 * 274.13058 * 25 24 2 38 38 H 1.08995 * 109.46568 * 34.12890 * 25 24 2 39 39 H 1.08997 * 109.46978 * 154.13042 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6607 -0.0015 6 6 4.8029 -1.4981 -0.0019 7 8 4.7036 -2.7074 -0.0939 8 7 6.0198 -0.9277 0.0998 9 6 7.2149 -1.7670 0.2160 10 1 6.9998 -2.7585 0.6145 11 6 8.0787 -1.7885 -1.0561 12 6 9.3051 -1.7403 -0.1295 13 1 9.6626 -2.7239 0.1753 14 7 10.3779 -0.8720 -0.6205 15 6 11.5294 -1.4211 -1.1183 16 1 11.6464 -2.4942 -1.1492 17 6 12.5435 -0.5984 -1.5889 18 7 12.4008 0.7095 -1.5515 19 14 14.1112 -1.3476 -2.2751 20 1 13.9548 -1.5721 -3.7347 21 1 15.2479 -0.4226 -2.0355 22 1 14.3769 -2.6436 -1.6006 23 6 8.3945 -1.0665 0.9106 24 7 2.2865 -1.0960 -0.0062 25 6 1.8312 -2.4885 -0.0147 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3632 -0.8903 0.5135 28 1 -0.3633 0.8897 0.5144 29 1 4.3977 1.3723 -0.0003 30 1 6.1043 0.0386 0.0959 31 1 7.9649 -0.8993 -1.6762 32 1 7.9967 -2.7152 -1.6241 33 1 10.2727 0.0918 -0.5930 34 1 13.1097 1.2843 -1.8800 35 1 8.5674 -1.4104 1.9304 36 1 8.3670 0.0200 0.8282 37 1 1.6476 -2.8168 1.0083 38 1 0.9100 -2.5659 -0.5920 39 1 2.5974 -3.1184 -0.4665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022601117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:16 Heat of formation + Delta-G solvation = 31.083137 kcal Electronic energy + Delta-G solvation = -20900.945270 eV Core-core repulsion = 17651.541635 eV Total energy + Delta-G solvation = -3249.403636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.30857 -40.89778 -39.20127 -35.89601 -35.16952 -34.28564 -32.80522 -31.75839 -28.85331 -27.78102 -26.54369 -26.30047 -24.56399 -23.18792 -21.52723 -21.12808 -20.54524 -19.22121 -18.60053 -17.63821 -17.20040 -17.04681 -16.35415 -16.14214 -15.70019 -15.55741 -15.01425 -14.82275 -14.60097 -14.20484 -14.13502 -13.72153 -13.65425 -13.31228 -13.28063 -13.16073 -13.15100 -12.82828 -12.23485 -12.19644 -12.06195 -11.78033 -11.54270 -11.38777 -10.94381 -10.85389 -10.76455 -10.11695 -9.50044 -8.98124 -7.94744 -5.22767 0.21362 1.43726 1.48625 1.49555 1.57959 1.72041 2.23595 2.30022 2.57748 3.36778 3.38793 3.61542 3.70752 3.83941 3.86847 3.93907 3.96980 4.25602 4.31108 4.31876 4.36699 4.58629 4.66483 4.72164 4.73124 4.89716 4.90645 5.04204 5.11765 5.13154 5.16437 5.34301 5.43677 5.51328 5.65847 6.05334 6.27788 6.44141 6.84658 7.08443 7.34411 8.10282 8.33320 9.28398 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042026 B = 0.002920 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.090006 B = 9585.178083 C = 9941.469754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.229 3.771 3 N -0.527 5.527 4 C 0.041 3.959 5 C -0.113 4.113 6 C 0.595 3.405 7 O -0.580 6.580 8 N -0.691 5.691 9 C 0.141 3.859 10 H 0.112 0.888 11 C -0.171 4.171 12 C 0.151 3.849 13 H 0.081 0.919 14 N -0.724 5.724 15 C -0.244 4.244 16 H 0.077 0.923 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.971 3.029 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.269 1.269 23 C -0.140 4.140 24 N -0.430 5.430 25 C 0.060 3.940 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.197 0.803 30 H 0.414 0.586 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.475 -3.634 5.555 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.033 4.033 3 N -0.247 5.247 4 C -0.114 4.114 5 C -0.229 4.229 6 C 0.383 3.617 7 O -0.462 6.462 8 N -0.341 5.341 9 C 0.036 3.964 10 H 0.129 0.871 11 C -0.213 4.213 12 C 0.040 3.960 13 H 0.099 0.901 14 N -0.361 5.361 15 C -0.376 4.376 16 H 0.095 0.905 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.217 1.217 21 H -0.222 1.222 22 H -0.194 1.194 23 C -0.179 4.179 24 N -0.111 5.111 25 C -0.081 4.081 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.214 0.786 30 H 0.251 0.749 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.208 0.792 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.725 -4.031 5.474 26.608 hybrid contribution 1.588 -0.172 -0.635 1.719 sum -24.136 -4.203 4.839 24.973 Atomic orbital electron populations 1.20505 0.81148 1.05889 1.05306 1.24334 0.97608 0.80530 1.00863 1.70149 1.02590 1.29337 1.22575 1.23042 0.95850 0.91390 1.01125 1.20704 0.85787 0.95107 1.21343 1.16983 0.82775 0.86331 0.75641 1.90740 1.87282 1.15485 1.52672 1.45571 1.04593 1.11023 1.72911 1.22219 0.81632 0.95426 0.97139 0.87060 1.24187 0.98117 1.01283 0.97723 1.21667 0.86187 0.94666 0.93469 0.90084 1.42508 1.15250 1.05144 1.73226 1.19698 0.93958 0.92187 1.31766 0.90545 1.25540 1.01992 0.95839 1.03371 1.69799 1.34736 1.03103 1.54276 0.85180 0.79337 0.77470 0.78032 1.21676 1.22227 1.19372 1.23692 0.93624 1.01020 0.99576 1.45320 1.04647 1.09458 1.51665 1.22481 1.03065 0.77295 1.05226 0.88188 0.88085 0.88172 0.78611 0.74928 0.91144 0.92670 0.79181 0.94012 0.89602 0.89301 0.88984 0.86254 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.00 71.24 0.71 0.10 16 2 C 0.23 4.38 7.88 138.20 1.09 5.46 16 3 N -0.53 -12.70 11.20 -187.40 -2.10 -14.80 16 4 C 0.04 0.94 11.37 84.10 0.96 1.90 16 5 C -0.11 -2.80 6.91 40.01 0.28 -2.52 16 6 C 0.59 16.50 7.78 86.47 0.67 17.17 16 7 O -0.58 -19.10 14.43 -4.30 -0.06 -19.16 16 8 N -0.69 -17.27 5.34 -443.91 -2.37 -19.64 16 9 C 0.14 3.96 4.21 45.52 0.19 4.15 16 10 H 0.11 3.19 7.53 -2.39 -0.02 3.18 16 11 C -0.17 -5.84 7.68 31.12 0.24 -5.60 16 12 C 0.15 5.67 4.48 45.52 0.20 5.87 16 13 H 0.08 3.02 8.10 -2.39 -0.02 3.00 16 14 N -0.72 -35.46 5.40 -320.44 -1.73 -37.19 16 15 C -0.24 -13.38 9.97 84.03 0.84 -12.54 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 17 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 18 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16 19 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.14 -4.06 7.58 31.12 0.24 -3.82 16 24 N -0.43 -8.91 3.17 -524.95 -1.67 -10.57 16 25 C 0.06 0.87 10.36 127.77 1.32 2.20 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.38 7.78 -2.38 -0.02 0.36 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.20 3.48 7.46 -2.91 -0.02 3.45 16 30 H 0.41 8.49 7.67 -92.71 -0.71 7.78 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.38 19.59 7.92 -92.71 -0.73 18.85 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.54 8.09 -2.39 -0.02 2.52 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 0.86 7.84 -2.39 -0.02 0.84 16 39 H 0.09 1.73 6.20 -2.39 -0.01 1.72 16 Total: -1.00 -73.17 330.77 1.22 -71.95 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.37 Total: 31.29 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 7.20 Total: 8.56 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -7.58 Total: -140.56 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.17 1.22 -71.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022601117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.032 kcal (2) G-P(sol) polarization free energy of solvation -73.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds