Wall clock time and date at job start Tue Mar 31 2020 00:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39864 * 125.89895 * 2 1 4 4 C 1.35318 * 107.92409 * 179.97438 * 3 2 1 5 5 N 1.34948 * 107.74136 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03711 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47051 * 124.99645 * 6 5 4 8 8 O 1.21274 * 119.99964 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99508 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99594 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.85122 * 336.19708 * 10 9 7 12 12 C 1.53779 * 113.69115 * 107.46541 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.99342 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 N 1.46496 * 113.61320 * 220.02163 * 13 12 10 16 16 C 1.36942 * 119.99927 * 252.49586 * 15 13 12 17 17 H 1.08001 * 119.99962 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99989 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99992 * 20 18 16 22 22 H 1.48497 * 109.47719 * 210.00090 * 20 18 16 23 23 H 1.48502 * 109.47249 * 330.00629 * 20 18 16 24 24 C 1.53779 * 113.61245 * 205.00346 * 10 9 7 25 25 N 1.30844 * 125.89793 * 180.29842 * 2 1 3 26 26 H 1.08998 * 109.47255 * 90.00559 * 1 2 3 27 27 H 1.09003 * 109.47427 * 210.00140 * 1 2 3 28 28 H 1.08999 * 109.47388 * 330.00197 * 1 2 3 29 29 H 1.08000 * 126.03818 * 359.97438 * 3 2 1 30 30 H 1.07996 * 126.13065 * 180.02562 * 4 3 2 31 31 H 1.09009 * 109.46999 * 5.00145 * 6 5 4 32 32 H 1.09000 * 109.47332 * 245.00353 * 6 5 4 33 33 H 0.96996 * 120.00779 * 0.02562 * 9 7 6 34 34 H 1.09002 * 113.61557 * 25.44454 * 12 10 9 35 35 H 1.09004 * 113.61501 * 254.53874 * 12 10 9 36 36 H 0.97002 * 120.00490 * 72.49429 * 15 13 12 37 37 H 0.96994 * 120.00158 * 179.97438 * 19 18 16 38 38 H 1.08997 * 113.61646 * 105.38794 * 24 10 9 39 39 H 1.08998 * 113.69354 * 334.49102 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 7 3.6087 -0.6341 0.0004 6 6 4.7899 -1.5008 0.0003 7 6 4.7127 -2.4552 1.1641 8 8 3.7643 -2.4156 1.9189 9 7 5.6972 -3.3533 1.3653 10 6 5.6219 -4.2815 2.4964 11 1 4.9943 -3.9110 3.3070 12 6 5.3080 -5.7301 2.0870 13 6 6.3294 -6.1686 3.1498 14 1 5.8952 -6.3140 4.1389 15 7 7.1721 -7.2896 2.7265 16 6 6.9804 -8.5329 3.2676 17 1 6.2076 -8.6871 4.0062 18 6 7.7786 -9.5952 2.8662 19 7 8.7201 -9.4075 1.9657 20 14 7.5175 -11.2910 3.6048 21 1 6.5346 -12.0425 2.7837 22 1 8.8080 -12.0253 3.6273 23 1 7.0021 -11.1533 4.9907 24 6 6.9940 -4.7942 2.9648 25 7 2.2742 -1.0599 -0.0055 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9922 2.1597 -0.0004 30 1 4.4891 1.3486 0.0011 31 1 5.6885 -0.8903 0.0900 32 1 4.8260 -2.0657 -0.9312 33 1 6.4556 -3.3852 0.7615 34 1 5.6085 -5.9706 1.0672 35 1 4.2860 -6.0356 2.3114 36 1 7.8660 -7.1513 2.0629 37 1 9.2780 -10.1498 1.6855 38 1 7.3330 -4.3441 3.8978 39 1 7.7564 -4.7791 2.1860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022732705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:02 Heat of formation + Delta-G solvation = 77.780822 kcal Electronic energy + Delta-G solvation = -20601.329726 eV Core-core repulsion = 17353.951055 eV Total energy + Delta-G solvation = -3247.378672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.35558 -39.80732 -37.97907 -34.14856 -34.04178 -32.76495 -30.65953 -29.94887 -29.45806 -26.45273 -25.16607 -24.38307 -22.39100 -21.27072 -20.65275 -19.93012 -19.27844 -17.45499 -17.25050 -17.02775 -16.00011 -15.64297 -14.84095 -14.62375 -14.50408 -14.22813 -13.80215 -13.66626 -13.28660 -13.06796 -12.93377 -12.74719 -12.45263 -12.19527 -12.02801 -11.96056 -11.29673 -10.95353 -10.70588 -10.59840 -10.53253 -10.36642 -10.10569 -9.93225 -9.65983 -9.25108 -8.94718 -8.82806 -8.67548 -7.01908 -5.83179 -3.12123 1.74198 2.22215 2.50899 2.70585 3.16188 3.41032 3.46652 3.47864 4.26817 4.51940 4.56678 4.60801 4.73491 4.80198 4.99249 5.11879 5.18858 5.32392 5.44339 5.46814 5.49633 5.67522 5.71423 5.82610 5.89273 5.95704 6.06749 6.20473 6.26365 6.42282 6.56340 6.58922 6.68928 6.79607 7.02096 7.50171 7.65506 7.66463 8.17173 8.35376 9.46839 10.02893 10.37479 11.39237 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042289 B = 0.002686 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.950749 B =10420.137004 C =10719.062666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.061 3.939 3 C -0.270 4.270 4 C 0.052 3.948 5 N -0.362 5.362 6 C 0.114 3.886 7 C 0.497 3.503 8 O -0.514 6.514 9 N -0.712 5.712 10 C 0.119 3.881 11 H 0.108 0.892 12 C -0.176 4.176 13 C 0.169 3.831 14 H 0.080 0.920 15 N -0.710 5.710 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.158 4.158 25 N -0.262 5.262 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.066 0.934 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 22.338 -5.857 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.299 4.299 4 C -0.093 4.093 5 N -0.144 5.144 6 C -0.011 4.011 7 C 0.280 3.720 8 O -0.388 6.388 9 N -0.364 5.364 10 C 0.015 3.985 11 H 0.126 0.874 12 C -0.218 4.218 13 C 0.056 3.944 14 H 0.098 0.902 15 N -0.348 5.348 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.198 4.198 25 N -0.085 5.085 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.190 0.810 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.342 20.815 -5.188 23.016 hybrid contribution 0.716 -0.007 -0.262 0.763 sum -7.625 20.808 -5.449 22.821 Atomic orbital electron populations 1.20141 0.86817 1.03266 1.02680 1.22413 0.97066 0.90867 1.00278 1.21346 0.91627 0.99671 1.17262 1.22507 0.99813 0.84508 1.02503 1.47987 1.04989 1.04155 1.57286 1.21515 0.85952 0.93804 0.99863 1.20481 0.83350 0.81785 0.86377 1.90780 1.31761 1.70174 1.46103 1.45985 1.23772 1.35614 1.31020 1.22510 0.98994 0.88264 0.88737 0.87367 1.24340 1.01421 0.93807 1.02263 1.21344 0.91106 0.86127 0.95813 0.90207 1.42349 1.38977 1.04634 1.48815 1.19319 1.13963 0.85992 1.18284 0.90973 1.24768 0.98348 0.98292 0.99464 1.69653 1.23019 1.31205 1.34266 0.86170 0.76920 0.84339 0.78651 1.21645 1.21740 1.20664 1.23867 0.95722 0.98982 1.01223 1.77498 0.85883 1.22325 1.22749 0.90764 0.90908 0.90620 0.83629 0.81014 0.85837 0.86836 0.76582 0.90166 0.92209 0.78097 0.93435 0.91486 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.45 36.00 0.38 -0.25 16 2 C 0.06 0.76 7.22 -82.41 -0.59 0.16 16 3 C -0.27 -2.76 10.74 -40.01 -0.43 -3.19 16 4 C 0.05 0.49 11.45 -17.22 -0.20 0.30 16 5 N -0.36 -4.37 3.39 -62.54 -0.21 -4.58 16 6 C 0.11 1.04 6.99 -5.19 -0.04 1.01 16 7 C 0.50 6.57 7.86 -10.98 -0.09 6.48 16 8 O -0.51 -9.37 15.32 5.56 0.09 -9.29 16 9 N -0.71 -8.50 5.36 -53.01 -0.28 -8.78 16 10 C 0.12 1.76 4.24 -67.12 -0.28 1.48 16 11 H 0.11 1.72 7.47 -51.93 -0.39 1.33 16 12 C -0.18 -3.08 7.68 -25.92 -0.20 -3.28 16 13 C 0.17 3.25 4.48 -67.12 -0.30 2.95 16 14 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 15 N -0.71 -17.35 5.40 -52.64 -0.28 -17.63 16 16 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 25 N -0.26 -3.95 11.66 33.67 0.39 -3.56 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.12 0.59 8.07 -51.92 -0.42 0.17 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.40 3.55 8.73 -40.82 -0.36 3.19 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.38 9.86 7.92 -40.82 -0.32 9.54 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -36.16 336.84 -7.40 -43.56 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.68 Total: 9.28 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.19 Total: -4.27 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.34 Total: -61.57 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.16 -7.40 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022732705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.343 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds