Wall clock time and date at job start Tue Mar 31 2020 00:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39864 * 125.89895 * 2 1 4 4 C 1.35318 * 107.92409 * 179.97438 * 3 2 1 5 5 N 1.34948 * 107.74136 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03711 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47051 * 124.99645 * 6 5 4 8 8 O 1.21274 * 119.99964 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99508 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99594 * 180.02562 * 9 7 6 11 11 H 1.09006 * 112.85122 * 336.19708 * 10 9 7 12 12 C 1.53779 * 113.69115 * 107.46541 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.99342 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 N 1.46496 * 113.61320 * 220.02163 * 13 12 10 16 16 C 1.36942 * 119.99927 * 252.49586 * 15 13 12 17 17 H 1.08001 * 119.99962 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99989 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99992 * 20 18 16 22 22 H 1.48497 * 109.47719 * 210.00090 * 20 18 16 23 23 H 1.48502 * 109.47249 * 330.00629 * 20 18 16 24 24 C 1.53779 * 113.61245 * 205.00346 * 10 9 7 25 25 N 1.30844 * 125.89793 * 180.29842 * 2 1 3 26 26 H 1.08998 * 109.47255 * 90.00559 * 1 2 3 27 27 H 1.09003 * 109.47427 * 210.00140 * 1 2 3 28 28 H 1.08999 * 109.47388 * 330.00197 * 1 2 3 29 29 H 1.08000 * 126.03818 * 359.97438 * 3 2 1 30 30 H 1.07996 * 126.13065 * 180.02562 * 4 3 2 31 31 H 1.09009 * 109.46999 * 5.00145 * 6 5 4 32 32 H 1.09000 * 109.47332 * 245.00353 * 6 5 4 33 33 H 0.96996 * 120.00779 * 0.02562 * 9 7 6 34 34 H 1.09002 * 113.61557 * 25.44454 * 12 10 9 35 35 H 1.09004 * 113.61501 * 254.53874 * 12 10 9 36 36 H 0.97002 * 120.00490 * 72.49429 * 15 13 12 37 37 H 0.96994 * 120.00158 * 179.97438 * 19 18 16 38 38 H 1.08997 * 113.61646 * 105.38794 * 24 10 9 39 39 H 1.08998 * 113.69354 * 334.49102 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 7 3.6087 -0.6341 0.0004 6 6 4.7899 -1.5008 0.0003 7 6 4.7127 -2.4552 1.1641 8 8 3.7643 -2.4156 1.9189 9 7 5.6972 -3.3533 1.3653 10 6 5.6219 -4.2815 2.4964 11 1 4.9943 -3.9110 3.3070 12 6 5.3080 -5.7301 2.0870 13 6 6.3294 -6.1686 3.1498 14 1 5.8952 -6.3140 4.1389 15 7 7.1721 -7.2896 2.7265 16 6 6.9804 -8.5329 3.2676 17 1 6.2076 -8.6871 4.0062 18 6 7.7786 -9.5952 2.8662 19 7 8.7201 -9.4075 1.9657 20 14 7.5175 -11.2910 3.6048 21 1 6.5346 -12.0425 2.7837 22 1 8.8080 -12.0253 3.6273 23 1 7.0021 -11.1533 4.9907 24 6 6.9940 -4.7942 2.9648 25 7 2.2742 -1.0599 -0.0055 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9922 2.1597 -0.0004 30 1 4.4891 1.3486 0.0011 31 1 5.6885 -0.8903 0.0900 32 1 4.8260 -2.0657 -0.9312 33 1 6.4556 -3.3852 0.7615 34 1 5.6085 -5.9706 1.0672 35 1 4.2860 -6.0356 2.3114 36 1 7.8660 -7.1513 2.0629 37 1 9.2780 -10.1498 1.6855 38 1 7.3330 -4.3441 3.8978 39 1 7.7564 -4.7791 2.1860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022732705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:56 Heat of formation + Delta-G solvation = 51.026586 kcal Electronic energy + Delta-G solvation = -20602.489877 eV Core-core repulsion = 17353.951055 eV Total energy + Delta-G solvation = -3248.538823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -42.14644 -40.96613 -39.31253 -35.80946 -34.87746 -34.24631 -31.95899 -31.22781 -30.32391 -27.38661 -26.56369 -26.14714 -23.82834 -22.07540 -21.69938 -20.99569 -20.49397 -19.20239 -18.24113 -18.14529 -17.26429 -16.63870 -16.23906 -16.07104 -15.74362 -15.20971 -14.99174 -14.82469 -14.45205 -14.43717 -13.91424 -13.64697 -13.52128 -13.32762 -13.17959 -12.97596 -12.88244 -12.82391 -12.25283 -12.21938 -12.08009 -11.79673 -11.54672 -11.40992 -11.04643 -10.88129 -10.11604 -10.03058 -9.44681 -9.00515 -7.97303 -5.25185 0.97275 1.46868 1.47794 1.51012 1.52937 1.56274 1.93272 2.20759 2.55583 3.34289 3.56111 3.68381 3.73072 3.82215 3.94157 4.02131 4.11530 4.17698 4.23850 4.29345 4.46069 4.69155 4.82307 4.82945 4.86324 4.88477 4.95897 5.04785 5.11283 5.12536 5.25718 5.33727 5.48914 5.64123 5.79753 6.13899 6.25525 6.54578 6.85622 7.20770 7.32266 8.07352 8.31268 9.25686 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042289 B = 0.002686 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.950749 B =10420.137004 C =10719.062666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.043 3.957 3 C -0.286 4.286 4 C 0.059 3.941 5 N -0.375 5.375 6 C 0.116 3.884 7 C 0.494 3.506 8 O -0.570 6.570 9 N -0.700 5.700 10 C 0.139 3.861 11 H 0.099 0.901 12 C -0.172 4.172 13 C 0.149 3.851 14 H 0.075 0.925 15 N -0.722 5.722 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.289 1.289 22 H -0.294 1.294 23 H -0.270 1.270 24 C -0.135 4.135 25 N -0.328 5.328 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.218 0.782 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.418 0.582 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 24.455 -6.213 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C -0.315 4.315 4 C -0.085 4.085 5 N -0.157 5.157 6 C -0.009 4.009 7 C 0.280 3.720 8 O -0.448 6.448 9 N -0.352 5.352 10 C 0.033 3.967 11 H 0.117 0.883 12 C -0.214 4.214 13 C 0.038 3.962 14 H 0.093 0.907 15 N -0.360 5.360 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.799 3.201 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.195 1.195 24 C -0.174 4.174 25 N -0.151 5.151 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.187 0.813 30 H 0.235 0.765 31 H 0.193 0.807 32 H 0.150 0.850 33 H 0.256 0.744 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.726 22.972 -5.552 24.864 hybrid contribution 0.465 -0.581 -0.147 0.758 sum -7.261 22.391 -5.698 24.219 Atomic orbital electron populations 1.20236 0.85447 1.03531 1.03611 1.23012 0.98397 0.91364 0.99555 1.21755 0.91860 1.00286 1.17556 1.23282 1.01207 0.83917 1.00123 1.48228 1.04616 1.05382 1.57493 1.21819 0.86976 0.93856 0.98216 1.21258 0.82173 0.81837 0.86716 1.90765 1.33866 1.71762 1.48373 1.45794 1.24381 1.34637 1.30406 1.22061 0.98183 0.87216 0.89267 0.88317 1.24186 0.99936 0.96094 1.01185 1.21657 0.91850 0.86733 0.95928 0.90675 1.42475 1.39613 1.05102 1.48823 1.19679 1.13216 0.87374 1.17552 0.90835 1.25522 0.98754 1.01755 1.00534 1.69787 1.24182 1.31844 1.35938 0.85189 0.76459 0.80134 0.78286 1.21660 1.22011 1.19538 1.23642 0.95849 0.95546 1.02397 1.77403 0.87849 1.24396 1.25408 0.89450 0.92417 0.88499 0.81265 0.76535 0.80657 0.84978 0.74403 0.90814 0.93559 0.79055 0.93940 0.89885 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.45 71.23 0.74 -0.49 16 2 C 0.04 1.06 7.22 43.10 0.31 1.37 16 3 C -0.29 -5.28 10.74 21.99 0.24 -5.05 16 4 C 0.06 0.95 11.45 83.54 0.96 1.91 16 5 N -0.37 -8.31 3.39 -351.77 -1.19 -9.50 16 6 C 0.12 1.75 6.99 85.63 0.60 2.35 16 7 C 0.49 12.25 7.86 87.66 0.69 12.94 16 8 O -0.57 -20.76 15.32 -3.01 -0.05 -20.80 16 9 N -0.70 -15.19 5.36 -440.03 -2.36 -17.55 16 10 C 0.14 3.92 4.24 45.51 0.19 4.11 16 11 H 0.10 3.08 7.47 -2.38 -0.02 3.06 16 12 C -0.17 -6.01 7.68 31.12 0.24 -5.77 16 13 C 0.15 5.70 4.48 45.52 0.20 5.90 16 14 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 15 N -0.72 -35.44 5.40 -320.44 -1.73 -37.17 16 16 C -0.25 -13.59 9.97 84.03 0.84 -12.75 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -58.13 13.06 21.65 0.28 -57.85 16 20 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C -0.13 -3.85 7.58 31.12 0.24 -3.62 16 25 N -0.33 -9.85 11.66 -47.39 -0.55 -10.40 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.22 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.18 0.75 8.07 -2.38 -0.02 0.73 16 32 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.42 6.11 8.73 -92.71 -0.81 5.30 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.38 19.44 7.92 -92.71 -0.73 18.70 16 37 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 2.52 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -81.44 336.84 1.66 -79.77 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.48 Total: 28.27 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.71 Total: -2.79 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.55 Total: -132.48 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -81.44 1.66 -79.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022732705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.799 kcal (2) G-P(sol) polarization free energy of solvation -81.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds